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Equivalence class NR_3.5_41610.21 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18S1P|1|A (rep)Large subunit ribosomal RNA23S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541YlmH bound to PtRNA-50SElectron microscopy1.9627332024-06-12
28QCQ|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541B. subtilis ApdA-stalled ribosomal complexElectron microscopy2.327452024-03-20
38BUU|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541ARE-ABCF VmlR2 bound to a 70S ribosomeElectron microscopy2.928522023-04-05
46TPQ|1|ULarge subunit ribosomal RNApre-23S rRNABacillus subtilisBacteriaRF02541RNase M5 bound to 50S ribosome with precursor 5S rRNAElectron microscopy3.0729242020-09-30
57AQD|1|ALarge subunit ribosomal RNA23S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541Structure of the bacterial RQC complex (Translocating State)Electron microscopy3.129182020-11-25
67AQC|1|ALarge subunit ribosomal RNA23S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541Structure of the bacterial RQC complex (Decoding State)Electron microscopy2.9928202020-11-25
76TNN|1|ULarge subunit ribosomal RNApre-23S rRNABacillus subtilisBacteriaRF02541Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNAElectron microscopy3.0729302020-09-30
87AS8|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOElectron microscopy2.928122020-12-09
96HA1|1|ALarge subunit ribosomal RNA23S ribosomal RNABacillus subtilisBacteriaRF02541Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinElectron microscopy3.128872018-08-29
107O5B|1|XLarge subunit ribosomal RNA23S rRNA (2887-MER)Bacillus subtilis subsp. subtilis str. 168BacteriaRF02541Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP boundElectron microscopy3.3328872022-02-02
118QPP|1|XLarge subunit ribosomal RNA23S ribosomal RNABacillus subtilisBacteriaRF02541Bacillus subtilis MutS2-collided disome complex (stalled 70S)Electron microscopy3.428872023-12-27
127OPE|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)Electron microscopy3.228142021-07-21
137QV1|1|VLarge subunit ribosomal RNA23S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541Bacillus subtilis collided disome (Leading 70S)Electron microscopy3.528872022-03-09
147QV2|1|VLarge subunit ribosomal RNA23S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541Bacillus subtilis collided disome (Collided 70S)Electron microscopy3.528872022-03-09
158S1U|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541YlmH bound to stalled 50S subunits with RqcH and PtRNAElectron microscopy3.427892024-06-12
167AS9|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH.Electron microscopy3.528122020-12-23
176HA8|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilisBacteriaRF02541Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeElectron microscopy3.528872018-08-29
187SAE|1|ALarge subunit ribosomal RNARNA (2434-MER)Bacillus subtilisBacteriaRF0254144SR70P Class1 ribosomal particleElectron microscopy324342022-03-02
199BSS|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF0254145SRbgA particle in complex with RbgA and YphC. Class BElectron microscopy3.125722024-12-25
209BSL|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF0254145SRbgA particle in complex with RbgA and YphC. Class AElectron microscopy3.124142024-12-25
219BS0|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541YphC-treated 45SYphC particle. Class 5Electron microscopy3.326782024-12-25
227S9U|1|ALarge subunit ribosomal RNARNA (2436-MER)Bacillus subtilisBacteriaRF0254144SR3C ribosomal particleElectron microscopy3.224362022-03-02
236PPF|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilisBacteriaRF02541Bacterial 45SRbgA ribosomal particle class BElectron microscopy3.424712019-09-18
246PVK|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilisBacteriaRF02541Bacterial 45SRbgA ribosomal particle class AElectron microscopy3.421692019-09-18
257ASA|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541Bacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOElectron microscopy3.5822020-12-23

Release history

Release3.3673.3683.3693.3703.3713.3723.3733.3743.3753.3763.377
Date2024-12-252025-01-012025-01-082025-01-152025-01-222025-01-292025-02-052025-02-122025-02-192025-02-262025-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
19BSS|1|A45SRbgA particle in complex with RbgA and YphC. Class BELECTRON MICROSCOPY3.12572
29BSL|1|A45SRbgA particle in complex with RbgA and YphC. Class AELECTRON MICROSCOPY3.12414
39BS0|1|AYphC-treated 45SYphC particle. Class 5ELECTRON MICROSCOPY3.32678
46PVK|1|ABacterial 45SRbgA ribosomal particle class AELECTRON MICROSCOPY3.42169
56PPF|1|ABacterial 45SRbgA ribosomal particle class BELECTRON MICROSCOPY3.42471
67S9U|1|A44SR3C ribosomal particleELECTRON MICROSCOPY3.22436
77SAE|1|A44SR70P Class1 ribosomal particleELECTRON MICROSCOPY32434
86TPQ|1|URNase M5 bound to 50S ribosome with precursor 5S rRNAELECTRON MICROSCOPY3.072924
96TNN|1|UMini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNAELECTRON MICROSCOPY3.072930
107QV1|1|VBacillus subtilis collided disome (Leading 70S)ELECTRON MICROSCOPY3.52887
117AQD|1|AStructure of the bacterial RQC complex (Translocating State)ELECTRON MICROSCOPY3.12918
127AQC|1|AStructure of the bacterial RQC complex (Decoding State)ELECTRON MICROSCOPY2.992820
137O5B|1|XCryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP boundELECTRON MICROSCOPY3.332887
148QPP|1|XBacillus subtilis MutS2-collided disome complex (stalled 70S)ELECTRON MICROSCOPY3.42887
157AS9|1|ABacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH.ELECTRON MICROSCOPY3.52812
167QV2|1|VBacillus subtilis collided disome (Collided 70S)ELECTRON MICROSCOPY3.52887
178QCQ|1|AB. subtilis ApdA-stalled ribosomal complexELECTRON MICROSCOPY2.32745
186HA8|1|ACryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeELECTRON MICROSCOPY3.52887
198BUU|1|AARE-ABCF VmlR2 bound to a 70S ribosomeELECTRON MICROSCOPY2.92852
208S1U|1|AYlmH bound to stalled 50S subunits with RqcH and PtRNAELECTRON MICROSCOPY3.42789
218S1P|1|AYlmH bound to PtRNA-50SELECTRON MICROSCOPY1.962733
226HA1|1|ACryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinELECTRON MICROSCOPY3.12887
237OPE|1|ARqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)ELECTRON MICROSCOPY3.22814
247AS8|1|ABacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOELECTRON MICROSCOPY2.92812
257ASA|1|ABacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOELECTRON MICROSCOPY3.582

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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