RNA 3D Hub //

Equivalence class NR_3.5_41668.3 Current

Showing 1 to 11 of 11 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
14LJ0|1|C (rep)polyadenosine RNANab2 Zn fingers complexed with polyadenosineX-ray diffraction2.1542013-10-09
24LJ0|1|Dpolyadenosine RNANab2 Zn fingers complexed with polyadenosineX-ray diffraction2.1542013-10-09
37M50|1|TT+ 7M50|1|kkRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*U)-3')Satellite tobacco mosaic virusCrystallographic structure of a cubic crystal form of STMV grown from ammonium sulfateX-ray diffraction2.31132021-12-15
47M50|1|VRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3')Satellite tobacco mosaic virusCrystallographic structure of a cubic crystal form of STMV grown from ammonium sulfateX-ray diffraction2.3172021-12-15
57M50|1|PRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3')Satellite tobacco mosaic virusCrystallographic structure of a cubic crystal form of STMV grown from ammonium sulfateX-ray diffraction2.3172021-12-15
64LJ0|1|Epolyadenosine RNANab2 Zn fingers complexed with polyadenosineX-ray diffraction2.1522013-10-09
75BKN|1|S+ 5BKN|1|hRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*U)-3')Satellite tobacco mosaic virusCrystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chlorideX-ray diffraction3122021-12-15
85BKN|1|PRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3')Satellite tobacco mosaic virusCrystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chlorideX-ray diffraction372021-12-15
95BKN|1|aRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3')Satellite tobacco mosaic virusCrystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chlorideX-ray diffraction342021-12-15
108CX0|1|KRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3')Spodoptera frugiperdaCryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC monomeric complexElectron microscopy2.782023-02-15
117OGK|1|D3'ETS(LeuZ)Escherichia coliA cooperative PNPase-Hfq-RNA carrier complex facilitates bacterial riboregulation. PNPase-3'ETS(leuZ)Electron microscopy3.482021-07-07

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.3893.3903.3913.392
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-042025-06-112025-06-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 11 of 11 entries
#SViewPDBTitleMethodResolution#NTs
14LJ0|1|ENab2 Zn fingers complexed with polyadenosineX-RAY DIFFRACTION2.152
24LJ0|1|CNab2 Zn fingers complexed with polyadenosineX-RAY DIFFRACTION2.154
34LJ0|1|DNab2 Zn fingers complexed with polyadenosineX-RAY DIFFRACTION2.154
48CX0|1|KCryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC monomeric complexELECTRON MICROSCOPY2.78
55BKN|1|S+ 5BKN|1|hCrystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chlorideX-RAY DIFFRACTION312
65BKN|1|PCrystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chlorideX-RAY DIFFRACTION37
77M50|1|PCrystallographic structure of a cubic crystal form of STMV grown from ammonium sulfateX-RAY DIFFRACTION2.317
85BKN|1|aCrystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chlorideX-RAY DIFFRACTION34
97OGK|1|DA cooperative PNPase-Hfq-RNA carrier complex facilitates bacterial riboregulation. PNPase-3'ETS(leuZ)ELECTRON MICROSCOPY3.48
107M50|1|VCrystallographic structure of a cubic crystal form of STMV grown from ammonium sulfateX-RAY DIFFRACTION2.317
117M50|1|TT+ 7M50|1|kkCrystallographic structure of a cubic crystal form of STMV grown from ammonium sulfateX-RAY DIFFRACTION2.3113

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

4LJ0|1|E:4LJ0|1|E = 04LJ0|1|E:4LJ0|1|C = 1.99214LJ0|1|E:4LJ0|1|D = 2.02754LJ0|1|E:8CX0|1|K not available4LJ0|1|E:5BKN|1|S+5BKN|1|h not available4LJ0|1|E:5BKN|1|P not available4LJ0|1|E:7M50|1|P not available4LJ0|1|E:5BKN|1|a not available4LJ0|1|E:7OGK|1|D not available4LJ0|1|E:7M50|1|V not available4LJ0|1|E:7M50|1|TT+7M50|1|kk not available4LJ0|1|C:4LJ0|1|E = 1.99214LJ0|1|C:4LJ0|1|C = 04LJ0|1|C:4LJ0|1|D = 0.44854LJ0|1|C:8CX0|1|K = 2.13394LJ0|1|C:5BKN|1|S+5BKN|1|h = 1.98084LJ0|1|C:5BKN|1|P = 1.99634LJ0|1|C:7M50|1|P = 1.95844LJ0|1|C:5BKN|1|a = 1.88174LJ0|1|C:7OGK|1|D = 2.55314LJ0|1|C:7M50|1|V not available4LJ0|1|C:7M50|1|TT+7M50|1|kk not available4LJ0|1|D:4LJ0|1|E = 2.02754LJ0|1|D:4LJ0|1|C = 0.44854LJ0|1|D:4LJ0|1|D = 04LJ0|1|D:8CX0|1|K = 2.24064LJ0|1|D:5BKN|1|S+5BKN|1|h = 2.02894LJ0|1|D:5BKN|1|P = 2.04584LJ0|1|D:7M50|1|P = 2.01694LJ0|1|D:5BKN|1|a = 1.84974LJ0|1|D:7OGK|1|D = 2.50964LJ0|1|D:7M50|1|V not available4LJ0|1|D:7M50|1|TT+7M50|1|kk not available8CX0|1|K:4LJ0|1|E not available8CX0|1|K:4LJ0|1|C = 2.13398CX0|1|K:4LJ0|1|D = 2.24068CX0|1|K:8CX0|1|K = 08CX0|1|K:5BKN|1|S+5BKN|1|h = 1.72328CX0|1|K:5BKN|1|P = 1.95008CX0|1|K:7M50|1|P = 1.94038CX0|1|K:5BKN|1|a = 1.84938CX0|1|K:7OGK|1|D = 2.87788CX0|1|K:7M50|1|V not available8CX0|1|K:7M50|1|TT+7M50|1|kk not available5BKN|1|S+5BKN|1|h:4LJ0|1|E not available5BKN|1|S+5BKN|1|h:4LJ0|1|C = 1.98085BKN|1|S+5BKN|1|h:4LJ0|1|D = 2.02895BKN|1|S+5BKN|1|h:8CX0|1|K = 1.72325BKN|1|S+5BKN|1|h:5BKN|1|S+5BKN|1|h = 05BKN|1|S+5BKN|1|h:5BKN|1|P = 0.74695BKN|1|S+5BKN|1|h:7M50|1|P = 0.74365BKN|1|S+5BKN|1|h:5BKN|1|a = 1.49565BKN|1|S+5BKN|1|h:7OGK|1|D = 2.36165BKN|1|S+5BKN|1|h:7M50|1|V not available5BKN|1|S+5BKN|1|h:7M50|1|TT+7M50|1|kk not available5BKN|1|P:4LJ0|1|E not available5BKN|1|P:4LJ0|1|C = 1.99635BKN|1|P:4LJ0|1|D = 2.04585BKN|1|P:8CX0|1|K = 1.95005BKN|1|P:5BKN|1|S+5BKN|1|h = 0.74695BKN|1|P:5BKN|1|P = 05BKN|1|P:7M50|1|P = 0.08375BKN|1|P:5BKN|1|a = 1.37395BKN|1|P:7OGK|1|D = 2.18215BKN|1|P:7M50|1|V not available5BKN|1|P:7M50|1|TT+7M50|1|kk not available7M50|1|P:4LJ0|1|E not available7M50|1|P:4LJ0|1|C = 1.95847M50|1|P:4LJ0|1|D = 2.01697M50|1|P:8CX0|1|K = 1.94037M50|1|P:5BKN|1|S+5BKN|1|h = 0.74367M50|1|P:5BKN|1|P = 0.08377M50|1|P:7M50|1|P = 07M50|1|P:5BKN|1|a = 1.32087M50|1|P:7OGK|1|D = 2.19597M50|1|P:7M50|1|V not available7M50|1|P:7M50|1|TT+7M50|1|kk not available5BKN|1|a:4LJ0|1|E not available5BKN|1|a:4LJ0|1|C = 1.88175BKN|1|a:4LJ0|1|D = 1.84975BKN|1|a:8CX0|1|K = 1.84935BKN|1|a:5BKN|1|S+5BKN|1|h = 1.49565BKN|1|a:5BKN|1|P = 1.37395BKN|1|a:7M50|1|P = 1.32085BKN|1|a:5BKN|1|a = 05BKN|1|a:7OGK|1|D = 1.34945BKN|1|a:7M50|1|V not available5BKN|1|a:7M50|1|TT+7M50|1|kk not available7OGK|1|D:4LJ0|1|E not available7OGK|1|D:4LJ0|1|C = 2.55317OGK|1|D:4LJ0|1|D = 2.50967OGK|1|D:8CX0|1|K = 2.87787OGK|1|D:5BKN|1|S+5BKN|1|h = 2.36167OGK|1|D:5BKN|1|P = 2.18217OGK|1|D:7M50|1|P = 2.19597OGK|1|D:5BKN|1|a = 1.34947OGK|1|D:7OGK|1|D = 07OGK|1|D:7M50|1|V not available7OGK|1|D:7M50|1|TT+7M50|1|kk not available7M50|1|V:4LJ0|1|E not available7M50|1|V:4LJ0|1|C not available7M50|1|V:4LJ0|1|D not available7M50|1|V:8CX0|1|K not available7M50|1|V:5BKN|1|S+5BKN|1|h not available7M50|1|V:5BKN|1|P not available7M50|1|V:7M50|1|P not available7M50|1|V:5BKN|1|a not available7M50|1|V:7OGK|1|D not available7M50|1|V:7M50|1|V = 07M50|1|V:7M50|1|TT+7M50|1|kk not available7M50|1|TT+7M50|1|kk:4LJ0|1|E not available7M50|1|TT+7M50|1|kk:4LJ0|1|C not available7M50|1|TT+7M50|1|kk:4LJ0|1|D not available7M50|1|TT+7M50|1|kk:8CX0|1|K not available7M50|1|TT+7M50|1|kk:5BKN|1|S+5BKN|1|h not available7M50|1|TT+7M50|1|kk:5BKN|1|P not available7M50|1|TT+7M50|1|kk:7M50|1|P not available7M50|1|TT+7M50|1|kk:5BKN|1|a not available7M50|1|TT+7M50|1|kk:7OGK|1|D not available7M50|1|TT+7M50|1|kk:7M50|1|V not available7M50|1|TT+7M50|1|kk:7M50|1|TT+7M50|1|kk = 04LJ0|1|E4LJ0|1|C4LJ0|1|D8CX0|1|K5BKN|1|S+5BKN|1|h5BKN|1|P7M50|1|P5BKN|1|a7OGK|1|D7M50|1|V7M50|1|TT+7M50|1|kkDiscrepancy0.000.501.001.502.002.50

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