Equivalence class NR_3.5_43481.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7UW1|1|a (rep) | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii 70S ribosome-Streptothricin-D complex | Electron microscopy | 2.21 | 1528 | 2023-04-19 |
| 2 | 7UVZ|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA | Electron microscopy | 2.21 | 1528 | 2023-04-19 |
| 3 | 7UVX|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii 70S ribosome-Streptothricin-F complex | Electron microscopy | 2.35 | 1528 | 2023-04-19 |
| 4 | 7UVW|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii ribosome: 70S with E-site tRNA | Electron microscopy | 2.37 | 1528 | 2023-04-19 |
| 5 | 7RYG|1|a | Small subunit ribosomal RNA | 16S Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S | Electron microscopy | 2.38 | 1528 | 2022-02-02 |
| 6 | 7UVY|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNA | Electron microscopy | 2.39 | 1528 | 2023-04-19 |
| 7 | 7RYH|1|a | Small subunit ribosomal RNA | 16S Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii Ribosome-TP-6076 complex: Empty 70S | Electron microscopy | 2.43 | 1528 | 2022-02-02 |
| 8 | 7UVV|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA | Electron microscopy | 2.5 | 1528 | 2023-04-19 |
| 9 | 7M4Y|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNA | Electron microscopy | 2.5 | 1528 | 2021-05-19 |
| 10 | 7M4W|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii Ribosome-Eravacycline complex: 70S Empty | Electron microscopy | 2.55 | 1528 | 2021-05-19 |
| 11 | 7RYF|1|a | Small subunit ribosomal RNA | 16S Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S | Electron microscopy | 2.65 | 1528 | 2022-02-02 |
| 12 | 7M4X|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNA | Electron microscopy | 2.66 | 1528 | 2021-05-19 |
| 13 | 7M4U|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii Ribosome-Eravacycline complex: 30S | Electron microscopy | 2.71 | 1528 | 2021-05-19 |
| 14 | 6V3A|1|sN1 | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA | Electron microscopy | 2.82 | 1528 | 2020-02-05 |
| 15 | 6V3B|1|sN1 | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state | Electron microscopy | 2.91 | 1528 | 2020-02-05 |
| 16 | 7M4Z|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii Ribosome-Eravacycline complex: 70S with hpf | Electron microscopy | 2.92 | 1528 | 2021-05-19 |
| 17 | 6V39|1|sN1 | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA | Electron microscopy | 3.04 | 1528 | 2020-02-05 |
| 18 | 6YT9|1|2 | Small subunit ribosomal RNA | 16S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body | Electron microscopy | 2.7 | 894 | 2020-09-16 |
| 19 | 6YPU|1|2 | Small subunit ribosomal RNA | 16S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body | Electron microscopy | 2.9 | 894 | 2020-09-16 |
| 20 | 6YS5|1|3 | Small subunit ribosomal RNA | 16S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head | Electron microscopy | 3 | 453 | 2020-09-16 |
| 21 | 6YTF|1|3 | Small subunit ribosomal RNA | 16S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head | Electron microscopy | 3 | 453 | 2020-09-16 |
| 22 | 6YT9|1|4 | Small subunit ribosomal RNA | 16S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body | Electron microscopy | 2.7 | 146 | 2020-09-16 |
| 23 | 6YPU|1|4 | Small subunit ribosomal RNA | 16S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body | Electron microscopy | 2.9 | 146 | 2020-09-16 |
Release history
| Release | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 | 3.356 | 3.357 | 3.358 | 3.359 | 3.360 | 3.361 | 3.362 | 3.363 | 3.364 | 3.365 | 3.366 | 3.367 | 3.368 | 3.369 | 3.370 | 3.371 | 3.372 | 3.373 | 3.374 | 3.375 | 3.376 | 3.377 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 | 2024-10-09 | 2024-10-16 | 2024-10-23 | 2024-10-30 | 2024-11-06 | 2024-11-13 | 2024-11-20 | 2024-11-27 | 2024-12-04 | 2024-12-11 | 2024-12-18 | 2024-12-25 | 2025-01-01 | 2025-01-08 | 2025-01-15 | 2025-01-22 | 2025-01-29 | 2025-02-05 | 2025-02-12 | 2025-02-19 | 2025-02-26 | 2025-03-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_43481.4 | NR_3.5_43481.3 | 3.279 | (17) 6V39|1|sN1, 6V3A|1|sN1, 6V3B|1|sN1, 6YPU|1|2, 6YPU|1|4, 6YS5|1|3, 6YT9|1|2, 6YT9|1|4, 6YTF|1|3, 7M4U|1|a, 7M4W|1|a, 7M4X|1|a, 7M4Y|1|a, 7M4Z|1|a, 7RYF|1|a, 7RYG|1|a, 7RYH|1|a | (6) 7UVV|1|a, 7UVW|1|a, 7UVX|1|a, 7UVY|1|a, 7UVZ|1|a, 7UW1|1|a | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 6YTF|1|3 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head | ELECTRON MICROSCOPY | 3 | 453 | |
| 2 | 6YS5|1|3 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head | ELECTRON MICROSCOPY | 3 | 453 | |
| 3 | 7M4Y|1|a | A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNA | ELECTRON MICROSCOPY | 2.5 | 1528 | |
| 4 | 7UVW|1|a | A. baumannii ribosome: 70S with E-site tRNA | ELECTRON MICROSCOPY | 2.37 | 1528 | |
| 5 | 7UVZ|1|a | A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA | ELECTRON MICROSCOPY | 2.21 | 1528 | |
| 6 | 7RYG|1|a | A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S | ELECTRON MICROSCOPY | 2.38 | 1528 | |
| 7 | 6YPU|1|2 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body | ELECTRON MICROSCOPY | 2.9 | 894 | |
| 8 | 6V3A|1|sN1 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA | ELECTRON MICROSCOPY | 2.82 | 1528 | |
| 9 | 6V3B|1|sN1 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state | ELECTRON MICROSCOPY | 2.91 | 1528 | |
| 10 | 7RYH|1|a | A. baumannii Ribosome-TP-6076 complex: Empty 70S | ELECTRON MICROSCOPY | 2.43 | 1528 | |
| 11 | 7UVX|1|a | A. baumannii 70S ribosome-Streptothricin-F complex | ELECTRON MICROSCOPY | 2.35 | 1528 | |
| 12 | 7M4W|1|a | A. baumannii Ribosome-Eravacycline complex: 70S Empty | ELECTRON MICROSCOPY | 2.55 | 1528 | |
| 13 | 7M4U|1|a | A. baumannii Ribosome-Eravacycline complex: 30S | ELECTRON MICROSCOPY | 2.71 | 1528 | |
| 14 | 6YT9|1|2 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body | ELECTRON MICROSCOPY | 2.7 | 894 | |
| 15 | 6V39|1|sN1 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA | ELECTRON MICROSCOPY | 3.04 | 1528 | |
| 16 | 7RYF|1|a | A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S | ELECTRON MICROSCOPY | 2.65 | 1528 | |
| 17 | 7UW1|1|a | A. baumannii 70S ribosome-Streptothricin-D complex | ELECTRON MICROSCOPY | 2.21 | 1528 | |
| 18 | 7M4X|1|a | A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNA | ELECTRON MICROSCOPY | 2.66 | 1528 | |
| 19 | 7M4Z|1|a | A. baumannii Ribosome-Eravacycline complex: 70S with hpf | ELECTRON MICROSCOPY | 2.92 | 1528 | |
| 20 | 7UVV|1|a | A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA | ELECTRON MICROSCOPY | 2.5 | 1528 | |
| 21 | 7UVY|1|a | A. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNA | ELECTRON MICROSCOPY | 2.39 | 1528 | |
| 22 | 6YT9|1|4 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body | ELECTRON MICROSCOPY | 2.7 | 146 | |
| 23 | 6YPU|1|4 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body | ELECTRON MICROSCOPY | 2.9 | 146 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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