NR_3.5_46995.41

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	8GLP\|1\|S2 (rep)	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)	Electron microscopy	1.67	2023-04-19
2	8YOO\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline	Electron microscopy	2	2024-07-10
3	8QOI\|1\|S2	Small subunit ribosomal RNA	18S rRNA (1740-MER)	Homo sapiens	Eukarya	RF01960	Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA	Electron microscopy	1.9	2024-06-12
4	8YOP\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline	Electron microscopy	2.2	2024-07-10
5	8K2C\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of the human 80S ribosome with Tigecycline	Electron microscopy	2.4	2024-07-10
6	8XSX\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2	Electron microscopy	2.4	2024-07-10
7	7R4X\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map	Electron microscopy	2.15	2023-02-22
8	8IFE\|1\|2m	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Arbekacin-added human 80S ribosome	Electron microscopy	2.57	2024-02-14
9	8IFD\|1\|2m	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Dibekacin-added human 80S ribosome	Electron microscopy	2.59	2024-02-14
10	8G5Y\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)	Electron microscopy	2.29	2023-04-19
11	6ZMI\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex	Electron microscopy	2.6	2020-08-19
12	7XNY\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells	Electron microscopy	2.5	2023-04-05
13	8JDK\|1\|w	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	Electron microscopy	2.26	2023-12-06
14	6ZM7\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex	Electron microscopy	2.7	2020-07-29
15	8T4S\|1\|2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit	Electron microscopy	2.6	2023-10-04
16	8PPL\|1\|A2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	MERS-CoV Nsp1 bound to the human 43S pre-initiation complex	Electron microscopy	2.65	2023-10-18
17	6ZLW\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit	Electron microscopy	2.6	2020-07-29
18	7XNX\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells	Electron microscopy	2.7	2023-04-05
19	8JDL\|1\|w	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)	Electron microscopy	2.42	2023-12-06
20	9BKD\|1\|A	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	The structure of human Pdcd4 bound to the 40S small ribosomal subunit	Electron microscopy	2.6	2024-09-04
21	8JDJ\|1\|w	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)	Electron microscopy	2.5	2023-12-06
22	6ZVH\|1\|2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	EDF1-ribosome complex	Electron microscopy	2.9	2020-08-19
23	6Z6N\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)	Electron microscopy	2.9	2020-07-29
24	8G60\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)	Electron microscopy	2.54	2023-04-19
25	8G5Z\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)	Electron microscopy	2.64	2023-04-19
26	6ZOJ\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2-Nsp1-40S complex, composite map	Electron microscopy	2.8	2020-07-22
27	8PJ5\|1\|A	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)	Electron microscopy	2.9	2024-08-14
28	6ZP4\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2	Electron microscopy	2.9	2020-07-29
29	6ZXG\|1\|2	Small subunit ribosomal RNA	pre-18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1	Electron microscopy	2.6	2020-12-02
30	6QZP\|1\|S2	Small subunit ribosomal RNA	18S rRNA (1740-MER)	Homo sapiens	Eukarya	RF01960	High-resolution cryo-EM structure of the human 80S ribosome	Electron microscopy	2.9	2019-04-24
31	6ZME\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex	Electron microscopy	3	2020-08-12
32	6Z6L\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of human CCDC124 bound to 80S ribosomes	Electron microscopy	3	2020-07-29
33	8XSY\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)	Electron microscopy	3	2024-07-10
34	8PJ6\|1\|A	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)	Electron microscopy	2.9	2024-08-14
35	6ZV6\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)	Electron microscopy	2.9	2021-05-12
36	6ZON\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1	Electron microscopy	3	2020-07-29
37	8XXL\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of the human 40S ribosome with PDCD4	Electron microscopy	2.9	2024-05-01
38	6ZXH\|1\|2	Small subunit ribosomal RNA	pre-18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2	Electron microscopy	2.7	2020-12-16
39	7QVP\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human collided disome (di-ribosome) stalled on XBP1 mRNA	Electron microscopy	3	2022-10-12
40	7K5I\|1\|2	Small subunit ribosomal RNA	40S ribosomal rRNA18S	Homo sapiens	Eukarya	RF01960	SARS-COV-2 nsp1 in complex with human 40S ribosome	Electron microscopy	2.9	2020-10-14
41	8G6J\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)	Electron microscopy	2.8	2023-04-19
42	8JDM\|1\|w	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)	Electron microscopy	2.67	2023-12-06
43	7QVP\|1\|S3	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human collided disome (di-ribosome) stalled on XBP1 mRNA	Electron microscopy	3	2022-10-12
44	8PPK\|1\|2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit	Electron microscopy	2.98	2023-10-18
45	6ZMO\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex	Electron microscopy	3.1	2020-08-19
46	6Z6M\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1	Electron microscopy	3.1	2020-07-29
47	7MQA\|1\|L1	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of the human SSU processome, state post-A1	Electron microscopy	2.7	2021-09-22
48	8XSZ\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA	Electron microscopy	3.2	2024-07-10
49	6ZXE\|1\|2	Small subunit ribosomal RNA	pre-18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2	Electron microscopy	3	2020-12-02
50	8PJ4\|1\|A	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Structure of human 48S translation initiation complex after eIF5 release (48S-4)	Electron microscopy	3.2	2024-08-14
51	6Y2L\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of human ribosome in POST state	Electron microscopy	3	2020-04-15
52	8G61\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)	Electron microscopy	2.94	2023-04-19
53	6ZUO\|1\|2	Small subunit ribosomal RNA	pre-18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)	Electron microscopy	3.1	2021-05-12
54	6XA1\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Structure of a drug-like compound stalled human translation termination complex	Electron microscopy	2.8	2020-10-07
55	6OM0\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs	Electron microscopy	3.1	2019-06-19
56	8Y0X\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Dormant ribosome with SERBP1	Electron microscopy	3.3	2024-02-07
57	6OLE\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs	Electron microscopy	3.1	2019-06-19
58	7WTZ\|1\|2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B2	Electron microscopy	3	2022-10-19
59	6ZN5\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2	Electron microscopy	3.2	2020-07-29
60	7WTU\|1\|2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)	Electron microscopy	3	2022-10-19
61	8XXM\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G	Electron microscopy	3.2	2024-05-01
62	7WTX\|1\|2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1	Electron microscopy	3.1	2022-10-19
63	6ZXD\|1\|2	Small subunit ribosomal RNA	pre-18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1	Electron microscopy	3.2	2020-12-02
64	9G8O\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	human 40S ribosome bound by a SKI238-exosome complex	Electron microscopy	3.4	2024-10-16
65	8Y0W\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	dormant ribosome with eIF5A, eEF2 and SERBP1	Electron microscopy	3.4	2024-02-07
66	6Y0G\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of human ribosome in classical-PRE state	Electron microscopy	3.2	2020-04-15
67	8PJ1\|1\|A	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Structure of human 48S translation initiation complex in open codon scanning state (48S-1)	Electron microscopy	3.4	2024-08-14
68	8PJ2\|1\|A	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)	Electron microscopy	3.4	2024-08-14
69	6ZMT\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex	Electron microscopy	3	2020-08-19
70	7WTT\|1\|2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)	Electron microscopy	3.1	2022-10-19
71	7WTW\|1\|2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A3	Electron microscopy	3.2	2022-10-19
72	7A09\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of a human ABCE1-bound 43S pre-initiation complex - State III	Electron microscopy	3.5	2020-10-14
73	6OLG\|1\|B1	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)	Electron microscopy	3.4	2019-06-19
74	7TQL\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.	Electron microscopy	3.4	2022-04-27
75	8OZ0\|1\|W	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Structure of a human 48S translation initiation complex with eIF4F and eIF4A	Electron microscopy	3.5	2024-02-07
76	7WU0\|1\|2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B3	Electron microscopy	3.3	2022-10-19
77	6OLI\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)	Electron microscopy	3.5	2019-06-19
78	6Y57\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of human ribosome in hybrid-PRE state	Electron microscopy	3.5	2020-04-15
79	6G5I\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - State R	Electron microscopy	3.5	2018-06-06
80	7WTS\|1\|2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14	Electron microscopy	3.2	2022-10-19
81	6ZOK\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2-Nsp1-40S complex, focused on body	Electron microscopy	2.8	2020-07-29
82	7WTV\|1\|2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A2	Electron microscopy	3.5	2022-10-19
83	5AJ0\|1\|B1	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo electron microscopy of actively translating human polysomes (POST state).	Electron microscopy	3.5	2015-05-20
84	6YBW\|1\|A	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Structure of a human 48S translational initiation complex - 40S body	Electron microscopy	3.1	2020-09-16
85	6ZOL\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2-Nsp1-40S complex, focused on head	Electron microscopy	2.8	2020-07-22
86	8RG0\|1\|A	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Structure of human eIF3 core from closed 48S translation initiation complex	Electron microscopy	3.4	2024-08-14

Release history

Release	3.357
Date	2024-10-16

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	Length
1	8RG0\|1\|A	Structure of human eIF3 core from closed 48S translation initiation complex	ELECTRON MICROSCOPY	3.4	1869
2	6ZOK\|1\|2	SARS-CoV-2-Nsp1-40S complex, focused on body	ELECTRON MICROSCOPY	2.8	1232
3	6ZOJ\|1\|2	SARS-CoV-2-Nsp1-40S complex, composite map	ELECTRON MICROSCOPY	2.8	1704
4	8T4S\|1\|2	MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit	ELECTRON MICROSCOPY	2.6	1671
5	6ZON\|1\|2	SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1	ELECTRON MICROSCOPY	3	1721
6	7R4X\|1\|2	Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map	ELECTRON MICROSCOPY	2.15	1580
7	6ZV6\|1\|2	Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)	ELECTRON MICROSCOPY	2.9	1681
8	6ZXH\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2	ELECTRON MICROSCOPY	2.7	1577
9	6ZXG\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1	ELECTRON MICROSCOPY	2.6	1577
10	6OLI\|1\|S2	Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)	ELECTRON MICROSCOPY	3.5	1680
11	6OLE\|1\|S2	Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs	ELECTRON MICROSCOPY	3.1	1680
12	6Y57\|1\|S2	Structure of human ribosome in hybrid-PRE state	ELECTRON MICROSCOPY	3.5	1658
13	7QVP\|1\|S3	Human collided disome (di-ribosome) stalled on XBP1 mRNA	ELECTRON MICROSCOPY	3	1705
14	8JDM\|1\|w	Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)	ELECTRON MICROSCOPY	2.67	1554
15	8JDL\|1\|w	Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)	ELECTRON MICROSCOPY	2.42	1554
16	8JDJ\|1\|w	Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)	ELECTRON MICROSCOPY	2.5	1554
17	8JDK\|1\|w	Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	ELECTRON MICROSCOPY	2.26	1554
18	6Y0G\|1\|S2	Structure of human ribosome in classical-PRE state	ELECTRON MICROSCOPY	3.2	1697
19	8G61\|1\|S2	mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)	ELECTRON MICROSCOPY	2.94	1598
20	8G5Z\|1\|S2	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)	ELECTRON MICROSCOPY	2.64	1616
21	8G6J\|1\|S2	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)	ELECTRON MICROSCOPY	2.8	1616
22	8G60\|1\|S2	mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)	ELECTRON MICROSCOPY	2.54	1569
23	8G5Y\|1\|S2	mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)	ELECTRON MICROSCOPY	2.29	1595
24	8GLP\|1\|S2	mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)	ELECTRON MICROSCOPY	1.67	1587
25	8QOI\|1\|S2	Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA	ELECTRON MICROSCOPY	1.9	1648
26	7QVP\|1\|S2	Human collided disome (di-ribosome) stalled on XBP1 mRNA	ELECTRON MICROSCOPY	3	1714
27	6Y2L\|1\|S2	Structure of human ribosome in POST state	ELECTRON MICROSCOPY	3	1713
28	6XA1\|1\|S2	Structure of a drug-like compound stalled human translation termination complex	ELECTRON MICROSCOPY	2.8	1512
29	6ZVH\|1\|2	EDF1-ribosome complex	ELECTRON MICROSCOPY	2.9	1740
30	6ZME\|1\|S2	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex	ELECTRON MICROSCOPY	3	1740
31	6ZM7\|1\|S2	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex	ELECTRON MICROSCOPY	2.7	1740
32	6ZMI\|1\|S2	SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex	ELECTRON MICROSCOPY	2.6	1740
33	6ZMO\|1\|S2	SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex	ELECTRON MICROSCOPY	3.1	1740
34	6Z6L\|1\|S2	Cryo-EM structure of human CCDC124 bound to 80S ribosomes	ELECTRON MICROSCOPY	3	1740
35	6Z6N\|1\|S2	Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)	ELECTRON MICROSCOPY	2.9	1740
36	7XNY\|1\|S2	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells	ELECTRON MICROSCOPY	2.5	1687
37	7XNX\|1\|S2	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells	ELECTRON MICROSCOPY	2.7	1686
38	6QZP\|1\|S2	High-resolution cryo-EM structure of the human 80S ribosome	ELECTRON MICROSCOPY	2.9	1707
39	8YOO\|1\|S2	Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline	ELECTRON MICROSCOPY	2	1719
40	8YOP\|1\|S2	Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline	ELECTRON MICROSCOPY	2.2	1740
41	8K2C\|1\|S2	Cryo-EM structure of the human 80S ribosome with Tigecycline	ELECTRON MICROSCOPY	2.4	1740
42	8XSZ\|1\|S2	Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA	ELECTRON MICROSCOPY	3.2	1740
43	6ZN5\|1\|2	SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2	ELECTRON MICROSCOPY	3.2	1671
44	7TQL\|1\|2	CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.	ELECTRON MICROSCOPY	3.4	1656
45	6OLG\|1\|B1	Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)	ELECTRON MICROSCOPY	3.4	1708
46	5AJ0\|1\|B1	Cryo electron microscopy of actively translating human polysomes (POST state).	ELECTRON MICROSCOPY	3.5	1708
47	8IFD\|1\|2m	Dibekacin-added human 80S ribosome	ELECTRON MICROSCOPY	2.59	1742
48	8IFE\|1\|2m	Arbekacin-added human 80S ribosome	ELECTRON MICROSCOPY	2.57	1742
49	8OZ0\|1\|W	Structure of a human 48S translation initiation complex with eIF4F and eIF4A	ELECTRON MICROSCOPY	3.5	1687
50	9G8O\|1\|S2	human 40S ribosome bound by a SKI238-exosome complex	ELECTRON MICROSCOPY	3.4	1869
51	6ZOL\|1\|2	SARS-CoV-2-Nsp1-40S complex, focused on head	ELECTRON MICROSCOPY	2.8	472
52	7K5I\|1\|2	SARS-COV-2 nsp1 in complex with human 40S ribosome	ELECTRON MICROSCOPY	2.9	1665
53	6ZLW\|1\|2	SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit	ELECTRON MICROSCOPY	2.6	1665
54	8PPK\|1\|2	Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit	ELECTRON MICROSCOPY	2.98	1685
55	7A09\|1\|2	Structure of a human ABCE1-bound 43S pre-initiation complex - State III	ELECTRON MICROSCOPY	3.5	1721
56	6ZP4\|1\|2	SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2	ELECTRON MICROSCOPY	2.9	1721
57	8PPL\|1\|A2	MERS-CoV Nsp1 bound to the human 43S pre-initiation complex	ELECTRON MICROSCOPY	2.65	1694
58	6ZMT\|1\|2	SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex	ELECTRON MICROSCOPY	3	1569
59	6ZUO\|1\|2	Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)	ELECTRON MICROSCOPY	3.1	1665
60	6G5I\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - State R	ELECTRON MICROSCOPY	3.5	1657
61	6ZXE\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2	ELECTRON MICROSCOPY	3	1645
62	6ZXD\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1	ELECTRON MICROSCOPY	3.2	1645
63	6OM0\|1\|S2	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs	ELECTRON MICROSCOPY	3.1	1680
64	8PJ5\|1\|A	Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)	ELECTRON MICROSCOPY	2.9	1869
65	8PJ4\|1\|A	Structure of human 48S translation initiation complex after eIF5 release (48S-4)	ELECTRON MICROSCOPY	3.2	1869
66	8PJ2\|1\|A	Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)	ELECTRON MICROSCOPY	3.4	1869
67	8PJ6\|1\|A	Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)	ELECTRON MICROSCOPY	2.9	1869
68	9BKD\|1\|A	The structure of human Pdcd4 bound to the 40S small ribosomal subunit	ELECTRON MICROSCOPY	2.6	1719
69	8XXL\|1\|S2	Cryo-EM structure of the human 40S ribosome with PDCD4	ELECTRON MICROSCOPY	2.9	1723
70	8XXM\|1\|S2	Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G	ELECTRON MICROSCOPY	3.2	1723
71	8XSX\|1\|S2	Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2	ELECTRON MICROSCOPY	2.4	1740
72	6Z6M\|1\|S2	Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1	ELECTRON MICROSCOPY	3.1	1740
73	8Y0W\|1\|S2	dormant ribosome with eIF5A, eEF2 and SERBP1	ELECTRON MICROSCOPY	3.4	1735
74	8Y0X\|1\|S2	Dormant ribosome with SERBP1	ELECTRON MICROSCOPY	3.3	1739
75	8XSY\|1\|S2	Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)	ELECTRON MICROSCOPY	3	1740
76	8PJ1\|1\|A	Structure of human 48S translation initiation complex in open codon scanning state (48S-1)	ELECTRON MICROSCOPY	3.4	1869
77	6YBW\|1\|A	Structure of a human 48S translational initiation complex - 40S body	ELECTRON MICROSCOPY	3.1	1196
78	7WTX\|1\|2	Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1	ELECTRON MICROSCOPY	3.1	1605
79	7WTZ\|1\|2	Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B2	ELECTRON MICROSCOPY	3	1624
80	7WU0\|1\|2	Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B3	ELECTRON MICROSCOPY	3.3	1624
81	7WTV\|1\|2	Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A2	ELECTRON MICROSCOPY	3.5	1573
82	7WTT\|1\|2	Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)	ELECTRON MICROSCOPY	3.1	1574
83	7WTU\|1\|2	Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)	ELECTRON MICROSCOPY	3	1574
84	7WTW\|1\|2	Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A3	ELECTRON MICROSCOPY	3.2	1585
85	7WTS\|1\|2	Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14	ELECTRON MICROSCOPY	3.2	1481
86	7MQA\|1\|L1	Cryo-EM structure of the human SSU processome, state post-A1	ELECTRON MICROSCOPY	2.7	1570

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_3.5_46995.41 Obsolete

Release history

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