#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18GLP|1|S2 (rep)Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)Electron microscopy1.6716722023-04-19
28QOI|1|S2Small subunit ribosomal RNA18S rRNA (1740-MER)Homo sapiensEukaryaRF01960Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNAElectron microscopy1.917402024-06-12
38YOO|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of the human 80S ribosome with 100 um TigecyclineElectron microscopy217192024-07-10
49C3H|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.Electron microscopy216602024-12-04
58G5Y|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)Electron microscopy2.2916802023-04-19
66ZLW|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunitElectron microscopy2.616652020-07-29
78T4S|1|2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunitElectron microscopy2.616712023-10-04
88YOP|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of the human 80S ribosome with 4 um TigecyclineElectron microscopy2.217402024-07-10
96ZXG|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1Electron microscopy2.616512020-12-02
108G60|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)Electron microscopy2.5416542023-04-19
118G5Z|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)Electron microscopy2.6417012023-04-19
126ZMI|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexElectron microscopy2.617402020-08-19
139BKD|1|ASmall subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960The structure of human Pdcd4 bound to the 40S small ribosomal subunitElectron microscopy2.616722024-09-04
148K2C|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of the human 80S ribosome with TigecyclineElectron microscopy2.417402024-07-10
156ZP4|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2Electron microscopy2.917212020-07-29
168PPL|1|A2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960MERS-CoV Nsp1 bound to the human 43S pre-initiation complexElectron microscopy2.6517802023-10-18
176ZXH|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2Electron microscopy2.716512020-12-16
187XNY|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cellsElectron microscopy2.517402023-04-05
197XNX|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cellsElectron microscopy2.717402023-04-05
206ZM7|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexElectron microscopy2.717402020-07-29
218XSX|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2Electron microscopy2.417402024-07-10
228XXL|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of the human 40S ribosome with PDCD4Electron microscopy2.917232024-05-01
236ZVH|1|2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960EDF1-ribosome complexElectron microscopy2.917402020-08-19
247MQA|1|L1+ 7MQA|1|L2Small subunit ribosomal RNA + U3 small nucleolar RNA18S rRNA, U3 snoRNAHomo sapiensEukaryaRF01960 + RF00012Cryo-EM structure of the human SSU processome, state post-A1Electron microscopy2.718132021-09-22
258PJ5|1|ASmall subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)Electron microscopy2.917542024-08-14
267K5I|1|2Small subunit ribosomal RNA40S ribosomal rRNA18SHomo sapiensEukaryaRF01960SARS-COV-2 nsp1 in complex with human 40S ribosomeElectron microscopy2.916652020-10-14
279ED0|1|2Small subunit ribosomal RNArRNAHomo sapiensEukaryaRF01960Human LARP1 bound to the 40S small ribosomal subunitElectron microscopy2.816172025-07-30
286ZOJ|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2-Nsp1-40S complex, composite mapElectron microscopy2.817042020-07-22
296ZME|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexElectron microscopy317402020-08-12
306ZMO|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complexElectron microscopy3.117402020-08-19
318PJ6|1|ASmall subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)Electron microscopy2.917192024-08-14
326ZV6|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)Electron microscopy2.916832021-05-12
336Y2L|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of human ribosome in POST stateElectron microscopy317132020-04-15
347WTX|1|2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1Electron microscopy3.116052022-10-19
357WTZ|1|2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B2Electron microscopy316242022-10-19
367QVP|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human collided disome (di-ribosome) stalled on XBP1 mRNAElectron microscopy317142022-10-12
378G61|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)Electron microscopy2.9416822023-04-19
389AZS|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human Post-eEF1A-AT-P-E state 80S ribosomeElectron microscopy2.817402025-04-30
398XXM|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3GElectron microscopy3.217232024-05-01
406ZMT|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complexElectron microscopy315692020-08-19
416ZON|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1Electron microscopy317212020-07-29
426Z6M|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1Electron microscopy3.117402020-07-29
437R4X|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM reconstruction of the human 40S ribosomal subunit - Full mapElectron microscopy2.1516462023-02-22
447WTU|1|2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)Electron microscopy315752022-10-19
459B0W|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human eEF2-A/P-P/E state 80S ribosomeElectron microscopy2.6617402025-04-30
466ZN5|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2Electron microscopy3.216712020-07-29
479KN0|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2Electron microscopy2.6516712025-11-26
487WTT|1|2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)Electron microscopy3.115752022-10-19
499B0O|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human Post-eEF1A-A/T-P-Z state 80S ribosomeElectron microscopy2.8317402025-04-30
506ZXE|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2Electron microscopy316452020-12-02
516ZXD|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1Electron microscopy3.216452020-12-02
528PJ4|1|ASmall subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Structure of human 48S translation initiation complex after eIF5 release (48S-4)Electron microscopy3.217542024-08-14
538Y0X|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Dormant ribosome with SERBP1Electron microscopy3.317392024-02-07
548XP2|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of the human 40S ribosome with LARP1Electron microscopy3.217402024-11-20
558OZ0|1|WSmall subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Structure of a human 48S translation initiation complex with eIF4F and eIF4AElectron microscopy3.517162024-02-07
569KMW|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2Electron microscopy2.7316712025-11-26
578JDJ|1|wSmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)Electron microscopy2.516342023-12-06
586Y0G|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of human ribosome in classical-PRE stateElectron microscopy3.216972020-04-15
598G6J|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)Electron microscopy2.817012023-04-19
609KMZ|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1Electron microscopy2.7816692025-11-26
619KMY|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State2Electron microscopy2.716592025-11-26
627A09|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of a human ABCE1-bound 43S pre-initiation complex - State IIIElectron microscopy3.517212020-10-14
637WTW|1|2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A3Electron microscopy3.215862022-10-19
646ZOK|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2-Nsp1-40S complex, focused on bodyElectron microscopy2.812322020-07-29
659B0N|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human Post-eEF1A-AT-P state 80S ribosomeElectron microscopy2.9217402025-04-30
669B11|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human unrotated hibernating without CCDC124 state 80S ribosomeElectron microscopy2.7717402025-04-30
677QVP|1|S3Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human collided disome (di-ribosome) stalled on XBP1 mRNAElectron microscopy317052022-10-12
686ZUO|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)Electron microscopy3.116652021-05-12
699B0H|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human Hibernating class5 80S ribosomeElectron microscopy2.5917402025-03-19
709B0J|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human unrotated hibernating with CCDC124 state 80S ribosomeElectron microscopy2.8417402025-04-30
719G8O|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960human 40S ribosome bound by a SKI238-exosome complexElectron microscopy3.417392024-10-16
726OM0|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsElectron microscopy3.117142019-06-19
736OLE|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsElectron microscopy3.117142019-06-19
748UIZ|1|S2Small subunit ribosomal RNA18S rRNA [Homo sapiens]Homo sapiensEukaryaRF01960In situ human P-E state 80S ribosomeElectron microscopy3.4317402025-04-09
756YBW|1|ASmall subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Structure of a human 48S translational initiation complex - 40S bodyElectron microscopy3.112202020-09-16
767WU0|1|2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B3Electron microscopy3.316242022-10-19
778JDL|1|wSmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)Electron microscopy2.4216342023-12-06
789B0F|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human Hibernating class3 80S ribosomeElectron microscopy2.7817402025-03-19
798XSY|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)Electron microscopy317402024-07-10
808XP3|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of the human 40S ribosome with LARP1 and LRRC47Electron microscopy3.417402024-11-20
819KMT|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State1Electron microscopy2.8116712025-11-26
828XSZ|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNAElectron microscopy3.217402024-07-10
838UJB|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human 80S ribosome with EBP1 (consensus map)Electron microscopy2.6717402025-04-30
849KMV|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1Electron microscopy2.6516622025-11-26
858UIY|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human P-Z state 80S ribosomeElectron microscopy3.4417402025-04-09
868JDK|1|wSmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)Electron microscopy2.2616342023-12-06
878PJ2|1|ASmall subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)Electron microscopy3.417542024-08-14
889KMU|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State2Electron microscopy2.8716602025-11-26
899AZM|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human ribosome (Focused on 40S with SERBP1 CTD)Electron microscopy2.684832025-04-30
908Y0W|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960dormant ribosome with eIF5A, eEF2 and SERBP1Electron microscopy3.417352024-02-07
919B0R|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human hibernating class2 80S ribosomeElectron microscopy2.8117402025-03-19
929AZN|1|S3Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human A/P-P/E state 80S ribosomeElectron microscopy2.9817082025-04-30
938JDM|1|wSmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)Electron microscopy2.6716342023-12-06
946ZOL|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2-Nsp1-40S complex, focused on headElectron microscopy2.84722020-07-22
958PJ1|1|ASmall subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Structure of human 48S translation initiation complex in open codon scanning state (48S-1)Electron microscopy3.417542024-08-14
969B0P|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human Hibernating class1 80S ribosomeElectron microscopy2.8217402025-03-19
976XA1|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Structure of a drug-like compound stalled human translation termination complexElectron microscopy2.815902020-10-07
986Y57|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of human ribosome in hybrid-PRE stateElectron microscopy3.516582020-04-15
998UKB|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosomeElectron microscopy3.0517402024-11-20
1007TQL|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.Electron microscopy3.416562022-04-27
1019B0Q|1|s2Small subunit ribosomal RNA18S rRNA [Homo sapiens]Homo sapiensEukaryaRF01960In situ human top-back di-ribosome structure (Composite map)Electron microscopy3.217402025-03-19
1029KMX|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1Electron microscopy2.8916332025-11-26
1038IFE|1|2mSmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Arbekacin-added human 80S ribosomeElectron microscopy2.5717422024-02-14
1047WTS|1|2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14Electron microscopy3.214812022-10-19
1059B0Q|1|S2Small subunit ribosomal RNA18S rRNA [Homo sapiens]Homo sapiensEukaryaRF01960In situ human top-back di-ribosome structure (Composite map)Electron microscopy3.217402025-03-19
1069B0G|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human Hibernating class4 80S ribosomeElectron microscopy2.5717402025-03-19
1078IFD|1|2mSmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Dibekacin-added human 80S ribosomeElectron microscopy2.5917422024-02-14
1086G5I|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State RElectron microscopy3.516572018-06-06
1099G8M|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960human 80S ribosome bound by a SKI2-exosome complexElectron microscopy3.317422024-10-23
1107WTV|1|2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A2Electron microscopy3.515742022-10-19
1116OLI|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)Electron microscopy3.517142019-06-19
1128UIK|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)Electron microscopy2.9617402025-04-30
1136OLG|1|B1Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)Electron microscopy3.417082019-06-19
1148RG0|1|ASmall subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Structure of human eIF3 core from closed 48S translation initiation complexElectron microscopy3.41212024-08-14
1159AZC|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human 80S ribosome (Consensus map)Electron microscopy2.1917402025-04-30
1169AZN|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human A/P-P/E state 80S ribosomeElectron microscopy2.98322025-04-30
1176Z6L|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of human CCDC124 bound to 80S ribosomesElectron microscopy317402020-07-29
1186Z6N|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)Electron microscopy2.917402020-07-29
1195AJ0|1|B1Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo electron microscopy of actively translating human polysomes (POST state).Electron microscopy3.517082015-05-20
1208PPK|1|2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunitElectron microscopy2.9817712023-10-18
1216QZP|1|S2Small subunit ribosomal RNA18S rRNA (1740-MER)Homo sapiensEukaryaRF01960High-resolution cryo-EM structure of the human 80S ribosomeElectron microscopy2.917402019-04-24

Release history

Release4.15
Date2025-11-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17MQA|1|L1+ 7MQA|1|L2Cryo-EM structure of the human SSU processome, state post-A1ELECTRON MICROSCOPY2.71813
27WTS|1|2Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14ELECTRON MICROSCOPY3.21481
37WTV|1|2Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A2ELECTRON MICROSCOPY3.51574
47WTT|1|2Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)ELECTRON MICROSCOPY3.11575
57WTU|1|2Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)ELECTRON MICROSCOPY31575
67WTW|1|2Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A3ELECTRON MICROSCOPY3.21586
77WTX|1|2Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1ELECTRON MICROSCOPY3.11605
87WTZ|1|2Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B2ELECTRON MICROSCOPY31624
97WU0|1|2Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B3ELECTRON MICROSCOPY3.31624
106OM0|1|S2Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.11714
118XSX|1|S2Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2ELECTRON MICROSCOPY2.41740
126Z6M|1|S2Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1ELECTRON MICROSCOPY3.11740
138Y0W|1|S2dormant ribosome with eIF5A, eEF2 and SERBP1ELECTRON MICROSCOPY3.41735
148XP3|1|S2Cryo-EM structure of the human 40S ribosome with LARP1 and LRRC47ELECTRON MICROSCOPY3.41740
158XP2|1|S2Cryo-EM structure of the human 40S ribosome with LARP1ELECTRON MICROSCOPY3.21740
168Y0X|1|S2Dormant ribosome with SERBP1ELECTRON MICROSCOPY3.31739
178XSY|1|S2Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)ELECTRON MICROSCOPY31740
189B0P|1|S2In situ human Hibernating class1 80S ribosomeELECTRON MICROSCOPY2.821740
199B0R|1|S2In situ human hibernating class2 80S ribosomeELECTRON MICROSCOPY2.811740
209B0F|1|S2In situ human Hibernating class3 80S ribosomeELECTRON MICROSCOPY2.781740
218UKB|1|S2In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosomeELECTRON MICROSCOPY3.051740
228XXL|1|S2Cryo-EM structure of the human 40S ribosome with PDCD4ELECTRON MICROSCOPY2.91723
238XXM|1|S2Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3GELECTRON MICROSCOPY3.21723
249B0H|1|S2In situ human Hibernating class5 80S ribosomeELECTRON MICROSCOPY2.591740
259B0G|1|S2In situ human Hibernating class4 80S ribosomeELECTRON MICROSCOPY2.571740
267R4X|1|2Cryo-EM reconstruction of the human 40S ribosomal subunit - Full mapELECTRON MICROSCOPY2.151646
276ZV6|1|2Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)ELECTRON MICROSCOPY2.91683
286ZXG|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1ELECTRON MICROSCOPY2.61651
296ZXH|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2ELECTRON MICROSCOPY2.71651
309G8O|1|S2human 40S ribosome bound by a SKI238-exosome complexELECTRON MICROSCOPY3.41739
318OZ0|1|WStructure of a human 48S translation initiation complex with eIF4F and eIF4AELECTRON MICROSCOPY3.51716
329G8M|1|S2human 80S ribosome bound by a SKI2-exosome complexELECTRON MICROSCOPY3.31742
338IFD|1|2mDibekacin-added human 80S ribosomeELECTRON MICROSCOPY2.591742
348IFE|1|2mArbekacin-added human 80S ribosomeELECTRON MICROSCOPY2.571742
356OLG|1|B1Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)ELECTRON MICROSCOPY3.41708
365AJ0|1|B1Cryo electron microscopy of actively translating human polysomes (POST state).ELECTRON MICROSCOPY3.51708
379B0Q|1|s2In situ human top-back di-ribosome structure (Composite map)ELECTRON MICROSCOPY3.21740
389B0Q|1|S2In situ human top-back di-ribosome structure (Composite map)ELECTRON MICROSCOPY3.21740
399B0W|1|S2In situ human eEF2-A/P-P/E state 80S ribosomeELECTRON MICROSCOPY2.661740
409AZN|1|S3In situ human A/P-P/E state 80S ribosomeELECTRON MICROSCOPY2.981708
416OLE|1|S2Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.11714
426OLI|1|S2Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)ELECTRON MICROSCOPY3.51714
436Y57|1|S2Structure of human ribosome in hybrid-PRE stateELECTRON MICROSCOPY3.51658
447QVP|1|S3Human collided disome (di-ribosome) stalled on XBP1 mRNAELECTRON MICROSCOPY31705
458JDM|1|wStructure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)ELECTRON MICROSCOPY2.671634
468JDL|1|wStructure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)ELECTRON MICROSCOPY2.421634
478JDK|1|wStructure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)ELECTRON MICROSCOPY2.261634
488JDJ|1|wStructure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)ELECTRON MICROSCOPY2.51634
496Y0G|1|S2Structure of human ribosome in classical-PRE stateELECTRON MICROSCOPY3.21697
508G61|1|S2mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)ELECTRON MICROSCOPY2.941682
518G6J|1|S2mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)ELECTRON MICROSCOPY2.81701
528G5Z|1|S2mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)ELECTRON MICROSCOPY2.641701
538GLP|1|S2mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)ELECTRON MICROSCOPY1.671672
548G5Y|1|S2mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)ELECTRON MICROSCOPY2.291680
558G60|1|S2mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)ELECTRON MICROSCOPY2.541654
568PJ6|1|AStructure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)ELECTRON MICROSCOPY2.91719
578PJ2|1|AStructure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)ELECTRON MICROSCOPY3.41754
588PJ4|1|AStructure of human 48S translation initiation complex after eIF5 release (48S-4)ELECTRON MICROSCOPY3.21754
598PJ5|1|AStructure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)ELECTRON MICROSCOPY2.91754
606XA1|1|S2Structure of a drug-like compound stalled human translation termination complexELECTRON MICROSCOPY2.81590
618QOI|1|S2Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNAELECTRON MICROSCOPY1.91740
628UIY|1|S2In situ human P-Z state 80S ribosomeELECTRON MICROSCOPY3.441740
638UIZ|1|S2In situ human P-E state 80S ribosomeELECTRON MICROSCOPY3.431740
649AZS|1|S2In situ human Post-eEF1A-AT-P-E state 80S ribosomeELECTRON MICROSCOPY2.81740
659AZC|1|S2In situ human 80S ribosome (Consensus map)ELECTRON MICROSCOPY2.191740
669B11|1|S2In situ human unrotated hibernating without CCDC124 state 80S ribosomeELECTRON MICROSCOPY2.771740
679B0J|1|S2In situ human unrotated hibernating with CCDC124 state 80S ribosomeELECTRON MICROSCOPY2.841740
689B0N|1|S2In situ human Post-eEF1A-AT-P state 80S ribosomeELECTRON MICROSCOPY2.921740
699B0O|1|S2In situ human Post-eEF1A-A/T-P-Z state 80S ribosomeELECTRON MICROSCOPY2.831740
708UJB|1|S2In situ human 80S ribosome with EBP1 (consensus map)ELECTRON MICROSCOPY2.671740
718UIK|1|S2In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)ELECTRON MICROSCOPY2.961740
729C3H|1|S2Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.ELECTRON MICROSCOPY21660
737XNX|1|S2High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cellsELECTRON MICROSCOPY2.71740
747XNY|1|S2High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cellsELECTRON MICROSCOPY2.51740
756QZP|1|S2High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.91740
768YOO|1|S2Cryo-EM structure of the human 80S ribosome with 100 um TigecyclineELECTRON MICROSCOPY21719
778YOP|1|S2Cryo-EM structure of the human 80S ribosome with 4 um TigecyclineELECTRON MICROSCOPY2.21740
788K2C|1|S2Cryo-EM structure of the human 80S ribosome with TigecyclineELECTRON MICROSCOPY2.41740
798XSZ|1|S2Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNAELECTRON MICROSCOPY3.21740
809AZM|1|S2In situ human ribosome (Focused on 40S with SERBP1 CTD)ELECTRON MICROSCOPY2.68483
816ZVH|1|2EDF1-ribosome complexELECTRON MICROSCOPY2.91740
826ZMO|1|S2SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complexELECTRON MICROSCOPY3.11740
836ZMI|1|S2SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexELECTRON MICROSCOPY2.61740
846ZM7|1|S2SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexELECTRON MICROSCOPY2.71740
856ZME|1|S2SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexELECTRON MICROSCOPY31740
866Z6N|1|S2Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)ELECTRON MICROSCOPY2.91740
876Z6L|1|S2Cryo-EM structure of human CCDC124 bound to 80S ribosomesELECTRON MICROSCOPY31740
886Y2L|1|S2Structure of human ribosome in POST stateELECTRON MICROSCOPY31713
897QVP|1|S2Human collided disome (di-ribosome) stalled on XBP1 mRNAELECTRON MICROSCOPY31714
907TQL|1|2CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.ELECTRON MICROSCOPY3.41656
916ZN5|1|2SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2ELECTRON MICROSCOPY3.21671
926ZLW|1|2SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunitELECTRON MICROSCOPY2.61665
938PPK|1|2Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunitELECTRON MICROSCOPY2.981771
947K5I|1|2SARS-COV-2 nsp1 in complex with human 40S ribosomeELECTRON MICROSCOPY2.91665
956ZOL|1|2SARS-CoV-2-Nsp1-40S complex, focused on headELECTRON MICROSCOPY2.8472
968PPL|1|A2MERS-CoV Nsp1 bound to the human 43S pre-initiation complexELECTRON MICROSCOPY2.651780
976ZP4|1|2SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2ELECTRON MICROSCOPY2.91721
987A09|1|2Structure of a human ABCE1-bound 43S pre-initiation complex - State IIIELECTRON MICROSCOPY3.51721
996ZMT|1|2SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complexELECTRON MICROSCOPY31569
1008PJ1|1|AStructure of human 48S translation initiation complex in open codon scanning state (48S-1)ELECTRON MICROSCOPY3.41754
1016ZXD|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1ELECTRON MICROSCOPY3.21645
1026ZXE|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2ELECTRON MICROSCOPY31645
1036ZUO|1|2Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)ELECTRON MICROSCOPY3.11665
1046G5I|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State RELECTRON MICROSCOPY3.51657
1059KMX|1|2Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1ELECTRON MICROSCOPY2.891633
1069KMV|1|2SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1ELECTRON MICROSCOPY2.651662
1079KMT|1|2Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State1ELECTRON MICROSCOPY2.811671
1089KMZ|1|2Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1ELECTRON MICROSCOPY2.781669
1099KN0|1|2Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2ELECTRON MICROSCOPY2.651671
1109KMY|1|2Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State2ELECTRON MICROSCOPY2.71659
1119KMW|1|2SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2ELECTRON MICROSCOPY2.731671
1129KMU|1|2Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State2ELECTRON MICROSCOPY2.871660
1136ZON|1|2SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1ELECTRON MICROSCOPY31721
1148T4S|1|2MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunitELECTRON MICROSCOPY2.61671
1156ZOJ|1|2SARS-CoV-2-Nsp1-40S complex, composite mapELECTRON MICROSCOPY2.81704
1166ZOK|1|2SARS-CoV-2-Nsp1-40S complex, focused on bodyELECTRON MICROSCOPY2.81232
1179BKD|1|AThe structure of human Pdcd4 bound to the 40S small ribosomal subunitELECTRON MICROSCOPY2.61672
1189ED0|1|2Human LARP1 bound to the 40S small ribosomal subunitELECTRON MICROSCOPY2.81617
1196YBW|1|AStructure of a human 48S translational initiation complex - 40S bodyELECTRON MICROSCOPY3.11220
1208RG0|1|AStructure of human eIF3 core from closed 48S translation initiation complexELECTRON MICROSCOPY3.4121
1219AZN|1|S2In situ human A/P-P/E state 80S ribosomeELECTRON MICROSCOPY2.9832

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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