Equivalence class NR_3.5_50912.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9AR4|1|B+ 9AR4|1|C+ 9AR4|1|D+ 9AR4|1|P+ 9AR4|1|X (rep) | Cleaved 3' non-target DNA strand, Cleaved 3' target DNA strand, Cleaved 5' non-target DNA strand, Cleaved 5' target DNA strand, Single guide RNA | Geobacillus thermodenitrificans | CryoEM structure of ThermoCas9 in post-cleavage state bound with the DNA containing NNNNCCA PAM | Electron microscopy | 2.2 | 181 | 2025-02-26 | |||
| 2 | 9BS6|1|B+ 9BS6|1|D+ 9BS6|1|C+ 9BS6|1|P | DNA (25-MER), DNA (5'-D(*AP*GP*CP*TP*TP*CP*GP*TP*GP*TP*AP*TP*AP*C)-3'), DNA (5'-D(P*CP*TP*AP*GP*A)-3'), DNA (5'-D(P*GP*TP*AP*TP*AP*CP*AP*CP*GP*AP*AP*GP*CP*T)-3'), RNA (114-MER) | Geobacillus thermodenitrificans | CryoEM structure of ThermoCas9 in post-cleavage state with a DNA containing NNNNCGA PAM | Electron microscopy | 2.6 | 167 | 2025-05-28 | |||
| 3 | 9AR6|1|B+ 9AR6|1|P+ 9AR6|1|D | non-target DNA, single guide RNA, target-strand DNA | Geobacillus thermodenitrificans | CryoEM structure of ThermoCas9 in pre-cleavage state bound with the DNA containing NNNNCCA PAM | Electron microscopy | 2.77 | 162 | 2025-02-26 | |||
| 4 | 9AR7|1|B+ 9AR7|1|C | cleaved 3' target DNA strand, single guide RNA | Geobacillus thermodenitrificans | CryoEM structure of ThermoCas9 bound with target DNA strand only | Electron microscopy | 2.52 | 145 | 2025-02-26 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9AR7|1|B+ 9AR7|1|C | CryoEM structure of ThermoCas9 bound with target DNA strand only | ELECTRON MICROSCOPY | 2.52 | 145 | |
| 2 | 9AR4|1|B+ 9AR4|1|C+ 9AR4|1|D+ 9AR4|1|P+ 9AR4|1|X | CryoEM structure of ThermoCas9 in post-cleavage state bound with the DNA containing NNNNCCA PAM | ELECTRON MICROSCOPY | 2.2 | 181 | |
| 3 | 9BS6|1|B+ 9BS6|1|D+ 9BS6|1|C+ 9BS6|1|P | CryoEM structure of ThermoCas9 in post-cleavage state with a DNA containing NNNNCGA PAM | ELECTRON MICROSCOPY | 2.6 | 167 | |
| 4 | 9AR6|1|B+ 9AR6|1|P+ 9AR6|1|D | CryoEM structure of ThermoCas9 in pre-cleavage state bound with the DNA containing NNNNCCA PAM | ELECTRON MICROSCOPY | 2.77 | 162 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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