NR_3.5_52752.37

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	8GLP\|1\|L7 (rep)	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)	Electron microscopy	1.67	120	2023-04-19
2	8A3D\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound	Electron microscopy	1.67	120	2023-03-08
3	8QYX\|1\|B2	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Human 60S ribosomal subunit	Electron microscopy	1.78	119	2024-12-11
4	8QOI\|1\|L7	5S ribosomal RNA	5S rRNA (120-MER)	Homo sapiens	Eukarya	RF00001	Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA	Electron microscopy	1.9	120	2024-06-12
5	8YOO\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline	Electron microscopy	2	120	2024-07-10
6	9C3H\|1\|L9	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.	Electron microscopy	2	120	2024-12-04
7	9AZC\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	In situ human 80S ribosome (Consensus map)	Electron microscopy	2.19	120	2025-04-30
8	8YOP\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline	Electron microscopy	2.2	120	2024-07-10
9	7OW7\|1\|B	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	EIF6-bound large subunit of the human ribosome	Electron microscopy	2.2	120	2022-10-05
10	8QFD\|1\|7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	UFL1 E3 ligase bound 60S ribosome	Electron microscopy	2.2	119	2024-02-21
11	8JDK\|1\|E	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	Electron microscopy	2.26	120	2023-12-06
12	8G5Y\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)	Electron microscopy	2.29	120	2023-04-19
13	8K2C\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Cryo-EM structure of the human 80S ribosome with Tigecycline	Electron microscopy	2.4	120	2024-07-10
14	8XSX\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2	Electron microscopy	2.4	120	2024-07-10
15	8JDL\|1\|E	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)	Electron microscopy	2.42	120	2023-12-06
16	7XNY\|1\|L2	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells	Electron microscopy	2.5	120	2023-04-05
17	8JDJ\|1\|E	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)	Electron microscopy	2.5	120	2023-12-06
18	8G60\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)	Electron microscopy	2.54	120	2023-04-19
19	8IFE\|1\|1B	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	Arbekacin-added human 80S ribosome	Electron microscopy	2.57	120	2024-02-14
20	9B0G\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	In situ human Hibernating class4 80S ribosome	Electron microscopy	2.57	120	2025-03-19
21	8FL7\|1\|L4	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Human nuclear pre-60S ribosomal subunit (State J2)	Electron microscopy	2.55	120	2023-07-12
22	8FLE\|1\|L4	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Human nuclear pre-60S ribosomal subunit (State L2)	Electron microscopy	2.48	120	2023-07-12
23	8IFD\|1\|1B	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	Dibekacin-added human 80S ribosome	Electron microscopy	2.59	120	2024-02-14
24	9B0H\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	In situ human Hibernating class5 80S ribosome	Electron microscopy	2.59	120	2025-03-19
25	8FLB\|1\|L4	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Human nuclear pre-60S ribosomal subunit (State K2)	Electron microscopy	2.55	120	2023-07-12
26	6ZMI\|1\|L7	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex	Electron microscopy	2.6	120	2020-08-19
27	8G5Z\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)	Electron microscopy	2.64	120	2023-04-19
28	8FL6\|1\|L4	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Human nuclear pre-60S ribosomal subunit (State J1)	Electron microscopy	2.62	120	2023-07-12
29	9GMO\|1\|B	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16	Electron microscopy	2.59	118	2024-10-02
30	9B0W\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	In situ human eEF2-A/P-P/E state 80S ribosome	Electron microscopy	2.66	120	2025-04-30
31	8UJB\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	In situ human 80S ribosome with EBP1 (consensus map)	Electron microscopy	2.67	120	2025-04-30
32	8JDM\|1\|E	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)	Electron microscopy	2.67	120	2023-12-06
33	8FLA\|1\|L4	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Human nuclear pre-60S ribosomal subunit (State K1)	Electron microscopy	2.63	120	2023-07-12
34	8FLD\|1\|L4	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Human nuclear pre-60S ribosomal subunit (State L1)	Electron microscopy	2.58	120	2023-07-12
35	6ZM7\|1\|L7	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex	Electron microscopy	2.7	120	2020-07-29
36	7XNX\|1\|L2	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells	Electron microscopy	2.7	120	2023-04-05
37	8FL3\|1\|L4	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Human nuclear pre-60S ribosomal subunit (State I2)	Electron microscopy	2.53	117	2023-07-12
38	7F5S\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	human delta-METTL18 60S ribosome	Electron microscopy	2.72	120	2022-06-22
39	8FLF\|1\|L4	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Human nuclear pre-60S ribosomal subunit (State L3)	Electron microscopy	2.65	120	2023-07-12
40	9B11\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	In situ human unrotated hibernating without CCDC124 state 80S ribosome	Electron microscopy	2.77	120	2025-04-30
41	9B0F\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	In situ human Hibernating class3 80S ribosome	Electron microscopy	2.78	120	2025-03-19
42	8FL9\|1\|L4	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Human nuclear pre-60S ribosomal subunit (State J3)	Electron microscopy	2.75	120	2023-07-12
43	8G6J\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)	Electron microscopy	2.8	120	2023-04-19
44	6XA1\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Structure of a drug-like compound stalled human translation termination complex	Electron microscopy	2.8	120	2020-10-07
45	8IDT\|1\|5	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	human nuclear pre-60S ribosomal particle - State G	Electron microscopy	2.8	120	2023-08-09
46	9AZS\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	In situ human Post-eEF1A-AT-P-E state 80S ribosome	Electron microscopy	2.8	120	2025-04-30
47	8FLC\|1\|L4	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Human nuclear pre-60S ribosomal subunit (State K3)	Electron microscopy	2.76	120	2023-07-12
48	9B0R\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	In situ human hibernating class2 80S ribosome	Electron microscopy	2.81	120	2025-03-19
49	9B0P\|1\|L7	5S ribosomal RNA	5S rRNA [Homo sapiens]	Homo sapiens	Eukarya	RF00001	In situ human Hibernating class1 80S ribosome	Electron microscopy	2.82	120	2025-03-19
50	6Y6X\|1\|L7	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	Tetracenomycin X bound to the human ribosome	Electron microscopy	2.8	120	2020-07-08
51	9B0O\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	In situ human Post-eEF1A-A/T-P-Z state 80S ribosome	Electron microscopy	2.83	120	2025-04-30
52	8RL2\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Human pre-60S - State 5	Electron microscopy	2.84	120	2025-01-15
53	9B0J\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	In situ human unrotated hibernating with CCDC124 state 80S ribosome	Electron microscopy	2.84	120	2025-04-30
54	8FL2\|1\|L4	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Human nuclear pre-60S ribosomal subunit (State I1)	Electron microscopy	2.67	117	2023-07-12
55	8UJC\|1\|L7	5S ribosomal RNA	5S rRNA [Homo sapiens]	Homo sapiens	Eukarya	RF00001	In situ human 60S ribosome	Electron microscopy	2.87	120	2025-04-16
56	8OJ5\|1\|7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)	Electron microscopy	2.9	120	2024-02-21
57	6Z6N\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)	Electron microscopy	2.9	120	2020-07-29
58	6QZP\|1\|L7	5S ribosomal RNA	5S rRNA (120-MER)	Homo sapiens	Eukarya	RF00001	High-resolution cryo-EM structure of the human 80S ribosome	Electron microscopy	2.9	120	2019-04-24
59	9B0N\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	In situ human Post-eEF1A-AT-P state 80S ribosome	Electron microscopy	2.92	120	2025-04-30
60	8FL0\|1\|L4	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Human nucleolar pre-60S ribosomal subunit (State H)	Electron microscopy	2.91	120	2023-07-12
61	8G61\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)	Electron microscopy	2.94	120	2023-04-19
62	8UIK\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)	Electron microscopy	2.96	120	2025-04-30
63	8UJD\|1\|L7	5S ribosomal RNA	5S rRNA [Homo sapiens]	Homo sapiens	Eukarya	RF00001	In situ human 60S ribosome with eIF6	Electron microscopy	2.96	120	2025-04-16
64	9AZN\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	In situ human A/P-P/E state 80S ribosome	Electron microscopy	2.98	120	2025-04-30
65	8XSY\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)	Electron microscopy	3	120	2024-07-10
66	6Z6L\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Cryo-EM structure of human CCDC124 bound to 80S ribosomes	Electron microscopy	3	120	2020-07-29
67	6ZME\|1\|L7	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex	Electron microscopy	3	120	2020-08-12
68	7QVP\|1\|L7	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	Human collided disome (di-ribosome) stalled on XBP1 mRNA	Electron microscopy	3	120	2022-10-12
69	7QVP\|1\|L9	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	Human collided disome (di-ribosome) stalled on XBP1 mRNA	Electron microscopy	3	120	2022-10-12
70	8IDY\|1\|5	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	human nuclear pre-60S ribosomal particle - State F	Electron microscopy	3	120	2023-08-09
71	8INF\|1\|5	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	human nuclear pre-60S ribosomal particle - State F'	Electron microscopy	3	120	2023-08-09
72	9QIW\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Human pre-60S - State 3	Electron microscopy	3.04	120	2025-04-30
73	8UKB\|1\|L7	5S ribosomal RNA	5S rRNA [Homo sapiens]	Homo sapiens	Eukarya	RF00001	In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome	Electron microscopy	3.05	120	2024-11-20
74	9GY4\|1\|7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)	Electron microscopy	3	120	2025-05-14
75	6LQM\|1\|5	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Cryo-EM structure of a pre-60S ribosomal subunit - state C	Electron microscopy	3.09	120	2020-08-26
76	8OHD\|1\|7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)	Electron microscopy	3.1	120	2024-02-21
77	6Z6M\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1	Electron microscopy	3.1	120	2020-07-29
78	6ZMO\|1\|L7	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex	Electron microscopy	3.1	120	2020-08-19
79	6LSR\|1\|5	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Cryo-EM structure of a pre-60S ribosomal subunit - state B	Electron microscopy	3.13	120	2020-08-26
80	6LU8\|1\|5	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Cryo-EM structure of a human pre-60S ribosomal subunit - state A	Electron microscopy	3.13	120	2020-08-26
81	6OLE\|1\|E	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs	Electron microscopy	3.1	119	2019-06-19
82	8FL4\|1\|L4	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Human nuclear pre-60S ribosomal subunit (State I3)	Electron microscopy	2.89	117	2023-07-12
83	6Y2L\|1\|L7	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	Structure of human ribosome in POST state	Electron microscopy	3	120	2020-04-15
84	6OM0\|1\|E	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs	Electron microscopy	3.1	119	2019-06-19
85	8XSZ\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA	Electron microscopy	3.2	120	2024-07-10
86	8INE\|1\|5	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	human nuclear pre-60S ribosomal particle - State G'	Electron microscopy	3.2	120	2023-08-09
87	9B0Q\|1\|l7	5S ribosomal RNA	RNA (120-MER)5S rRNA [Homo sapiens]	Homo sapiens	Eukarya	RF00001	In situ human top-back di-ribosome structure (Composite map)	Electron microscopy	3.2	120	2025-03-19
88	9B0Q\|1\|L7	5S ribosomal RNA	RNA (120-MER)5S rRNA [Homo sapiens]	Homo sapiens	Eukarya	RF00001	In situ human top-back di-ribosome structure (Composite map)	Electron microscopy	3.2	120	2025-03-19
89	6LSS\|1\|5	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Cryo-EM structure of a pre-60S ribosomal subunit - state preA	Electron microscopy	3.23	120	2020-08-26
90	6Y0G\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Structure of human ribosome in classical-PRE state	Electron microscopy	3.2	120	2020-04-15
91	8OJ8\|1\|7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)	Electron microscopy	3.3	120	2024-02-21
92	8OJ0\|1\|7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)	Electron microscopy	3.3	120	2024-02-21
93	7BHP\|1\|L7	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	Cryo-EM structure of the human Ebp1 - 80S ribosome	Electron microscopy	3.3	120	2021-02-03
94	8IR1\|1\|W	5S ribosomal RNA	5S RNA	Homo sapiens	Eukarya	RF00001	human nuclear pre-60S ribosomal particle - State A	Electron microscopy	3.3	120	2023-08-09
95	8IE3\|1\|5	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	human nuclear pre-60S ribosomal particle - State E	Electron microscopy	3.3	120	2023-08-09
96	9G8M\|1\|L7	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	human 80S ribosome bound by a SKI2-exosome complex	Electron microscopy	3.3	120	2024-10-23
97	8Y0X\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	Dormant ribosome with SERBP1	Electron microscopy	3.3	120	2024-02-07
98	8IPD\|1\|3	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	human nuclear pre-60S ribosomal particle - State C	Electron microscopy	3.2	115	2023-08-09
99	8IPY\|1\|3	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	human nuclear pre-60S ribosomal particle - State D'	Electron microscopy	3.2	115	2023-08-09
100	8INK\|1\|3	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	human nuclear pre-60S ribosomal particle - State D	Electron microscopy	3.2	115	2023-08-09
101	8Y0W\|1\|L7	5S ribosomal RNA	5S rRNA	Homo sapiens	Eukarya	RF00001	dormant ribosome with eIF5A, eEF2 and SERBP1	Electron microscopy	3.4	120	2024-02-07
102	8UIZ\|1\|L7	5S ribosomal RNA	5S rRNA [Homo sapiens]	Homo sapiens	Eukarya	RF00001	In situ human P-E state 80S ribosome	Electron microscopy	3.43	120	2025-04-09
103	8UIY\|1\|L7	5S ribosomal RNA	5S rRNA [Homo sapiens]	Homo sapiens	Eukarya	RF00001	In situ human P-Z state 80S ribosome	Electron microscopy	3.44	120	2025-04-09
104	8IR3\|1\|5	5S ribosomal RNA	5S RNA	Homo sapiens	Eukarya	RF00001	human nuclear pre-60S ribosomal particle - State B'	Electron microscopy	3.5	120	2023-08-09
105	6OLG\|1\|A4	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)	Electron microscopy	3.4	119	2019-06-19
106	6OLI\|1\|E	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)	Electron microscopy	3.5	119	2019-06-19
107	6Y57\|1\|L7	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	Structure of human ribosome in hybrid-PRE state	Electron microscopy	3.5	120	2020-04-15
108	5AJ0\|1\|A4	5S ribosomal RNA	5S ribosomal RNA	Homo sapiens	Eukarya	RF00001	Cryo electron microscopy of actively translating human polysomes (POST state).	Electron microscopy	3.5	119	2015-05-20

Release history

Release	3.387	3.388
Date	2025-05-14	2025-05-21

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	7BHP\|1\|L7	Cryo-EM structure of the human Ebp1 - 80S ribosome	ELECTRON MICROSCOPY	3.3	120
2	5AJ0\|1\|A4	Cryo electron microscopy of actively translating human polysomes (POST state).	ELECTRON MICROSCOPY	3.5	119
3	6OLG\|1\|A4	Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)	ELECTRON MICROSCOPY	3.4	119
4	6OM0\|1\|E	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs	ELECTRON MICROSCOPY	3.1	119
5	6OLE\|1\|E	Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs	ELECTRON MICROSCOPY	3.1	119
6	6OLI\|1\|E	Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)	ELECTRON MICROSCOPY	3.5	119
7	6Y57\|1\|L7	Structure of human ribosome in hybrid-PRE state	ELECTRON MICROSCOPY	3.5	120
8	7QVP\|1\|L9	Human collided disome (di-ribosome) stalled on XBP1 mRNA	ELECTRON MICROSCOPY	3	120
9	8IFD\|1\|1B	Dibekacin-added human 80S ribosome	ELECTRON MICROSCOPY	2.59	120
10	8IFE\|1\|1B	Arbekacin-added human 80S ribosome	ELECTRON MICROSCOPY	2.57	120
11	6Y0G\|1\|L7	Structure of human ribosome in classical-PRE state	ELECTRON MICROSCOPY	3.2	120
12	6Y2L\|1\|L7	Structure of human ribosome in POST state	ELECTRON MICROSCOPY	3	120
13	7QVP\|1\|L7	Human collided disome (di-ribosome) stalled on XBP1 mRNA	ELECTRON MICROSCOPY	3	120
14	7XNX\|1\|L2	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells	ELECTRON MICROSCOPY	2.7	120
15	7XNY\|1\|L2	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells	ELECTRON MICROSCOPY	2.5	120
16	8OJ5\|1\|7	60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)	ELECTRON MICROSCOPY	2.9	120
17	8OHD\|1\|7	60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)	ELECTRON MICROSCOPY	3.1	120
18	8OJ8\|1\|7	60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)	ELECTRON MICROSCOPY	3.3	120
19	8OJ0\|1\|7	60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)	ELECTRON MICROSCOPY	3.3	120
20	9GY4\|1\|7	60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)	ELECTRON MICROSCOPY	3	120
21	9GMO\|1\|B	eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16	ELECTRON MICROSCOPY	2.59	118
22	8G61\|1\|L7	mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)	ELECTRON MICROSCOPY	2.94	120
23	8G5Z\|1\|L7	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)	ELECTRON MICROSCOPY	2.64	120
24	8G6J\|1\|L7	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)	ELECTRON MICROSCOPY	2.8	120
25	8G60\|1\|L7	mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)	ELECTRON MICROSCOPY	2.54	120
26	8G5Y\|1\|L7	mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)	ELECTRON MICROSCOPY	2.29	120
27	8GLP\|1\|L7	mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)	ELECTRON MICROSCOPY	1.67	120
28	9C3H\|1\|L9	Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.	ELECTRON MICROSCOPY	2	120
29	8QYX\|1\|B2	Human 60S ribosomal subunit	ELECTRON MICROSCOPY	1.78	119
30	8K2C\|1\|L7	Cryo-EM structure of the human 80S ribosome with Tigecycline	ELECTRON MICROSCOPY	2.4	120
31	8YOO\|1\|L7	Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline	ELECTRON MICROSCOPY	2	120
32	8YOP\|1\|L7	Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline	ELECTRON MICROSCOPY	2.2	120
33	8XSY\|1\|L7	Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)	ELECTRON MICROSCOPY	3	120
34	8XSZ\|1\|L7	Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA	ELECTRON MICROSCOPY	3.2	120
35	6Y6X\|1\|L7	Tetracenomycin X bound to the human ribosome	ELECTRON MICROSCOPY	2.8	120
36	8XSX\|1\|L7	Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2	ELECTRON MICROSCOPY	2.4	120
37	8A3D\|1\|B	Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound	ELECTRON MICROSCOPY	1.67	120
38	7F5S\|1\|L7	human delta-METTL18 60S ribosome	ELECTRON MICROSCOPY	2.72	120
39	8QOI\|1\|L7	Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA	ELECTRON MICROSCOPY	1.9	120
40	8UJC\|1\|L7	In situ human 60S ribosome	ELECTRON MICROSCOPY	2.87	120
41	8UJD\|1\|L7	In situ human 60S ribosome with eIF6	ELECTRON MICROSCOPY	2.96	120
42	8UJB\|1\|L7	In situ human 80S ribosome with EBP1 (consensus map)	ELECTRON MICROSCOPY	2.67	120
43	9AZC\|1\|L7	In situ human 80S ribosome (Consensus map)	ELECTRON MICROSCOPY	2.19	120
44	9B11\|1\|L7	In situ human unrotated hibernating without CCDC124 state 80S ribosome	ELECTRON MICROSCOPY	2.77	120
45	9B0J\|1\|L7	In situ human unrotated hibernating with CCDC124 state 80S ribosome	ELECTRON MICROSCOPY	2.84	120
46	9AZS\|1\|L7	In situ human Post-eEF1A-AT-P-E state 80S ribosome	ELECTRON MICROSCOPY	2.8	120
47	8UIZ\|1\|L7	In situ human P-E state 80S ribosome	ELECTRON MICROSCOPY	3.43	120
48	8UIY\|1\|L7	In situ human P-Z state 80S ribosome	ELECTRON MICROSCOPY	3.44	120
49	8UIK\|1\|L7	In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)	ELECTRON MICROSCOPY	2.96	120
50	8UKB\|1\|L7	In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome	ELECTRON MICROSCOPY	3.05	120
51	9B0O\|1\|L7	In situ human Post-eEF1A-A/T-P-Z state 80S ribosome	ELECTRON MICROSCOPY	2.83	120
52	9B0N\|1\|L7	In situ human Post-eEF1A-AT-P state 80S ribosome	ELECTRON MICROSCOPY	2.92	120
53	9B0F\|1\|L7	In situ human Hibernating class3 80S ribosome	ELECTRON MICROSCOPY	2.78	120
54	9B0R\|1\|L7	In situ human hibernating class2 80S ribosome	ELECTRON MICROSCOPY	2.81	120
55	9B0P\|1\|L7	In situ human Hibernating class1 80S ribosome	ELECTRON MICROSCOPY	2.82	120
56	9B0H\|1\|L7	In situ human Hibernating class5 80S ribosome	ELECTRON MICROSCOPY	2.59	120
57	9B0G\|1\|L7	In situ human Hibernating class4 80S ribosome	ELECTRON MICROSCOPY	2.57	120
58	9B0W\|1\|L7	In situ human eEF2-A/P-P/E state 80S ribosome	ELECTRON MICROSCOPY	2.66	120
59	9AZN\|1\|L7	In situ human A/P-P/E state 80S ribosome	ELECTRON MICROSCOPY	2.98	120
60	9B0Q\|1\|L7	In situ human top-back di-ribosome structure (Composite map)	ELECTRON MICROSCOPY	3.2	120
61	9B0Q\|1\|l7	In situ human top-back di-ribosome structure (Composite map)	ELECTRON MICROSCOPY	3.2	120
62	7OW7\|1\|B	EIF6-bound large subunit of the human ribosome	ELECTRON MICROSCOPY	2.2	120
63	6QZP\|1\|L7	High-resolution cryo-EM structure of the human 80S ribosome	ELECTRON MICROSCOPY	2.9	120
64	6XA1\|1\|L7	Structure of a drug-like compound stalled human translation termination complex	ELECTRON MICROSCOPY	2.8	120
65	6Z6M\|1\|L7	Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1	ELECTRON MICROSCOPY	3.1	120
66	6Z6N\|1\|L7	Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)	ELECTRON MICROSCOPY	2.9	120
67	6Z6L\|1\|L7	Cryo-EM structure of human CCDC124 bound to 80S ribosomes	ELECTRON MICROSCOPY	3	120
68	6ZME\|1\|L7	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex	ELECTRON MICROSCOPY	3	120
69	6ZM7\|1\|L7	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex	ELECTRON MICROSCOPY	2.7	120
70	6ZMI\|1\|L7	SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex	ELECTRON MICROSCOPY	2.6	120
71	6ZMO\|1\|L7	SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex	ELECTRON MICROSCOPY	3.1	120
72	8Y0X\|1\|L7	Dormant ribosome with SERBP1	ELECTRON MICROSCOPY	3.3	120
73	8Y0W\|1\|L7	dormant ribosome with eIF5A, eEF2 and SERBP1	ELECTRON MICROSCOPY	3.4	120
74	8QFD\|1\|7	UFL1 E3 ligase bound 60S ribosome	ELECTRON MICROSCOPY	2.2	119
75	8JDL\|1\|E	Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)	ELECTRON MICROSCOPY	2.42	120
76	8JDJ\|1\|E	Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)	ELECTRON MICROSCOPY	2.5	120
77	8JDK\|1\|E	Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	ELECTRON MICROSCOPY	2.26	120
78	8JDM\|1\|E	Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)	ELECTRON MICROSCOPY	2.67	120
79	6LQM\|1\|5	Cryo-EM structure of a pre-60S ribosomal subunit - state C	ELECTRON MICROSCOPY	3.09	120
80	6LSR\|1\|5	Cryo-EM structure of a pre-60S ribosomal subunit - state B	ELECTRON MICROSCOPY	3.13	120
81	6LSS\|1\|5	Cryo-EM structure of a pre-60S ribosomal subunit - state preA	ELECTRON MICROSCOPY	3.23	120
82	6LU8\|1\|5	Cryo-EM structure of a human pre-60S ribosomal subunit - state A	ELECTRON MICROSCOPY	3.13	120
83	8FLD\|1\|L4	Human nuclear pre-60S ribosomal subunit (State L1)	ELECTRON MICROSCOPY	2.58	120
84	8FLE\|1\|L4	Human nuclear pre-60S ribosomal subunit (State L2)	ELECTRON MICROSCOPY	2.48	120
85	8FLF\|1\|L4	Human nuclear pre-60S ribosomal subunit (State L3)	ELECTRON MICROSCOPY	2.65	120
86	8FL6\|1\|L4	Human nuclear pre-60S ribosomal subunit (State J1)	ELECTRON MICROSCOPY	2.62	120
87	8FL7\|1\|L4	Human nuclear pre-60S ribosomal subunit (State J2)	ELECTRON MICROSCOPY	2.55	120
88	8FL9\|1\|L4	Human nuclear pre-60S ribosomal subunit (State J3)	ELECTRON MICROSCOPY	2.75	120
89	8FLC\|1\|L4	Human nuclear pre-60S ribosomal subunit (State K3)	ELECTRON MICROSCOPY	2.76	120
90	8FLB\|1\|L4	Human nuclear pre-60S ribosomal subunit (State K2)	ELECTRON MICROSCOPY	2.55	120
91	8FLA\|1\|L4	Human nuclear pre-60S ribosomal subunit (State K1)	ELECTRON MICROSCOPY	2.63	120
92	8IDT\|1\|5	human nuclear pre-60S ribosomal particle - State G	ELECTRON MICROSCOPY	2.8	120
93	8INE\|1\|5	human nuclear pre-60S ribosomal particle - State G'	ELECTRON MICROSCOPY	3.2	120
94	8INF\|1\|5	human nuclear pre-60S ribosomal particle - State F'	ELECTRON MICROSCOPY	3	120
95	8IDY\|1\|5	human nuclear pre-60S ribosomal particle - State F	ELECTRON MICROSCOPY	3	120
96	8IE3\|1\|5	human nuclear pre-60S ribosomal particle - State E	ELECTRON MICROSCOPY	3.3	120
97	8IR1\|1\|W	human nuclear pre-60S ribosomal particle - State A	ELECTRON MICROSCOPY	3.3	120
98	8IR3\|1\|5	human nuclear pre-60S ribosomal particle - State B'	ELECTRON MICROSCOPY	3.5	120
99	9G8M\|1\|L7	human 80S ribosome bound by a SKI2-exosome complex	ELECTRON MICROSCOPY	3.3	120
100	8RL2\|1\|L7	Human pre-60S - State 5	ELECTRON MICROSCOPY	2.84	120
101	9QIW\|1\|L7	Human pre-60S - State 3	ELECTRON MICROSCOPY	3.04	120
102	8FL0\|1\|L4	Human nucleolar pre-60S ribosomal subunit (State H)	ELECTRON MICROSCOPY	2.91	120
103	8FL2\|1\|L4	Human nuclear pre-60S ribosomal subunit (State I1)	ELECTRON MICROSCOPY	2.67	117
104	8FL3\|1\|L4	Human nuclear pre-60S ribosomal subunit (State I2)	ELECTRON MICROSCOPY	2.53	117
105	8FL4\|1\|L4	Human nuclear pre-60S ribosomal subunit (State I3)	ELECTRON MICROSCOPY	2.89	117
106	8IPY\|1\|3	human nuclear pre-60S ribosomal particle - State D'	ELECTRON MICROSCOPY	3.2	115
107	8INK\|1\|3	human nuclear pre-60S ribosomal particle - State D	ELECTRON MICROSCOPY	3.2	115
108	8IPD\|1\|3	human nuclear pre-60S ribosomal particle - State C	ELECTRON MICROSCOPY	3.2	115

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_3.5_52752.37 Current

Release history

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