Equivalence class NR_3.5_52781.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8QZ8|1|V (rep) | Template vRNA_S loop (40-mer) | Tilapia lake virus | Tilapia Lake Virus polymerase in vRNA pre-termination state (transcriptase conformation) | Electron microscopy | 3.13 | 33 | 2023-12-27 | |||
| 2 | 8PSZ|1|D | 5' vRNA end - vRNA loop (40-mer) | Tilapia lake virus | Tilapia Lake Virus polymerase in vRNA elongation state with additional mode B promoter (transcriptase conformation) | Electron microscopy | 2.42 | 14 | 2024-01-10 | |||
| 3 | 8PSZ|1|V | 5' vRNA end - vRNA loop (40-mer) | Tilapia lake virus | Tilapia Lake Virus polymerase in vRNA elongation state with additional mode B promoter (transcriptase conformation) | Electron microscopy | 2.42 | 13 | 2024-01-10 | |||
| 4 | 8PT2|1|D | 5' vRNA end - vRNA loop (40-mer) | Tilapia lake virus | Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (transcriptase conformation) | Electron microscopy | 2.59 | 14 | 2023-12-27 | |||
| 5 | 8PT2|1|V | 5' vRNA end - vRNA loop (40-mer) | Tilapia lake virus | Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (transcriptase conformation) | Electron microscopy | 2.59 | 13 | 2023-12-27 | |||
| 6 | 8PTH|1|D | 3' vRNA end - vRNA loop (40-mer) | Tilapia lake virus | Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (open core | partial replicase conformation) | Electron microscopy | 2.73 | 14 | 2023-12-27 | |||
| 7 | 8PTH|1|V | 3' vRNA end - vRNA loop (40-mer) | Tilapia lake virus | Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (open core | partial replicase conformation) | Electron microscopy | 2.73 | 13 | 2023-12-27 | |||
| 8 | 8PSU|1|V | 5' vRNA end - vRNA loop (40-mer) | Tilapia lake virus | Tilapia Lake Virus polymerase in vRNA pre-initiation state mode A (core only) | Electron microscopy | 3.18 | 14 | 2023-12-27 | |||
| 9 | 8PTJ|1|V | 3' vRNA end - vRNA loop (40-mer) | Tilapia lake virus | Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (close core | partial replicase conformation) | Electron microscopy | 2.86 | 9 | 2023-12-27 | |||
| 10 | 8PSX|1|V | 5' vRNA end - vRNA loop (40-mer) | Tilapia lake virus | Tilapia Lake Virus polymerase in vRNA elongation state (transcriptase conformation) | Electron microscopy | 2.96 | 8 | 2023-12-27 | |||
| 11 | 8PTJ|1|D | 3' vRNA end - vRNA loop (40-mer) | Tilapia lake virus | Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (close core | partial replicase conformation) | Electron microscopy | 2.86 | 6 | 2023-12-27 |
Release history
| Release | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 | 3.356 | 3.357 | 3.358 | 3.359 | 3.360 | 3.361 | 3.362 | 3.363 | 3.364 | 3.365 | 3.366 | 3.367 | 3.368 | 3.369 | 3.370 | 3.371 | 3.372 | 3.373 | 3.374 | 3.375 | 3.376 | 3.377 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 | 2024-10-09 | 2024-10-16 | 2024-10-23 | 2024-10-30 | 2024-11-06 | 2024-11-13 | 2024-11-20 | 2024-11-27 | 2024-12-04 | 2024-12-11 | 2024-12-18 | 2024-12-25 | 2025-01-01 | 2025-01-08 | 2025-01-15 | 2025-01-22 | 2025-01-29 | 2025-02-05 | 2025-02-12 | 2025-02-19 | 2025-02-26 | 2025-03-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 8PSU|1|V | Tilapia Lake Virus polymerase in vRNA pre-initiation state mode A (core only) | ELECTRON MICROSCOPY | 3.18 | 14 | |
| 2 | 8PSX|1|V | Tilapia Lake Virus polymerase in vRNA elongation state (transcriptase conformation) | ELECTRON MICROSCOPY | 2.96 | 8 | |
| 3 | 8PT2|1|V | Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (transcriptase conformation) | ELECTRON MICROSCOPY | 2.59 | 13 | |
| 4 | 8PSZ|1|V | Tilapia Lake Virus polymerase in vRNA elongation state with additional mode B promoter (transcriptase conformation) | ELECTRON MICROSCOPY | 2.42 | 13 | |
| 5 | 8PTH|1|V | Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (open core | partial replicase conformation) | ELECTRON MICROSCOPY | 2.73 | 13 | |
| 6 | 8PTJ|1|V | Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (close core | partial replicase conformation) | ELECTRON MICROSCOPY | 2.86 | 9 | |
| 7 | 8QZ8|1|V | Tilapia Lake Virus polymerase in vRNA pre-termination state (transcriptase conformation) | ELECTRON MICROSCOPY | 3.13 | 33 | |
| 8 | 8PTJ|1|D | Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (close core | partial replicase conformation) | ELECTRON MICROSCOPY | 2.86 | 6 | |
| 9 | 8PTH|1|D | Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (open core | partial replicase conformation) | ELECTRON MICROSCOPY | 2.73 | 14 | |
| 10 | 8PSZ|1|D | Tilapia Lake Virus polymerase in vRNA elongation state with additional mode B promoter (transcriptase conformation) | ELECTRON MICROSCOPY | 2.42 | 14 | |
| 11 | 8PT2|1|D | Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (transcriptase conformation) | ELECTRON MICROSCOPY | 2.59 | 14 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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