RNA 3D Hub //

Equivalence class NR_3.5_53745.4 Current

Showing 1 to 18 of 18 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17ZW0|1|sl (rep)Transfer RNAmRNA, tRNASaccharomyces cerevisiae W303EukaryaRF00005FAP-80S Complex - Rotated stateElectron microscopy2.4762022-10-05
28AGX|1|xTransfer RNAAla tRNASaccharomyces cerevisiaeEukaryaRF00005Yeast RQC complex in state with the RING domain of Ltn1 in the IN positionElectron microscopy2.4742023-03-08
38AGX|1|yTransfer RNAAla tRNASaccharomyces cerevisiaeEukaryaRF00005Yeast RQC complex in state with the RING domain of Ltn1 in the IN positionElectron microscopy2.4732023-03-08
48AAF|1|xTransfer RNAAla tRNASaccharomyces cerevisiaeEukaryaRF00005Yeast RQC complex in state GElectron microscopy2.5742023-03-08
58AAF|1|yTransfer RNAAla tRNASaccharomyces cerevisiaeEukaryaRF00005Yeast RQC complex in state GElectron microscopy2.5732023-03-08
68AGZ|1|xTransfer RNAAla tRNASaccharomyces cerevisiaeEukaryaRF00005Yeast RQC complex in state with the RING domain of Ltn1 in the OUT positionElectron microscopy2.6742023-03-08
78AGT|1|xTransfer RNAA-site Ala aminoacyl-tRNASaccharomyces cerevisiaeEukaryaRF00005Yeast RQC complex in state FElectron microscopy2.6742023-03-08
88AGV|1|xTransfer RNAAla tRNASaccharomyces cerevisiaeEukaryaRF00005Yeast RQC complex in state HElectron microscopy2.6742023-03-08
98AGW|1|xTransfer RNAAla tRNASaccharomyces cerevisiaeEukaryaRF00005Yeast RQC complex in state DElectron microscopy2.6742023-03-08
108AGZ|1|yTransfer RNAAla tRNASaccharomyces cerevisiaeEukaryaRF00005Yeast RQC complex in state with the RING domain of Ltn1 in the OUT positionElectron microscopy2.6732023-03-08
118AGT|1|yTransfer RNAP-site petidyl-tRNASaccharomyces cerevisiaeEukaryaRF00005Yeast RQC complex in state FElectron microscopy2.6732023-03-08
128AGV|1|yTransfer RNAAla tRNASaccharomyces cerevisiaeEukaryaRF00005Yeast RQC complex in state HElectron microscopy2.6732023-03-08
138AGW|1|yTransfer RNAAla tRNASaccharomyces cerevisiaeEukaryaRF00005Yeast RQC complex in state DElectron microscopy2.6732023-03-08
148AGU|1|yTransfer RNAP-site tRNASaccharomyces cerevisiaeEukaryaRF00005Yeast RQC complex in state EElectron microscopy2.7732023-03-08
159BDN|1|TIRNTransfer RNAtRNAAlaSaccharomyces cerevisiaeEukaryaRF0000580S ribosome with angiogenin and tRNAAlaElectron microscopy3.1712024-07-24
169OFV|1|yTransfer RNAAla tRNASaccharomyces cerevisiaeEukaryaRF00005Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complexElectron microscopy3.16732025-06-11
179OFV|1|xTransfer RNAAla tRNASaccharomyces cerevisiaeEukaryaRF00005Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complexElectron microscopy3.16742025-06-11
186R87|1|BTransfer RNAtRNA-AlaSaccharomyces cerevisiaeEukaryaRF00005Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)Electron microscopy3.4762019-06-26

Release history

Release3.3913.3923.393
Date2025-06-112025-06-182025-06-25

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 18 of 18 entries
#SViewPDBTitleMethodResolution#NTs
19BDN|1|TIRN80S ribosome with angiogenin and tRNAAlaELECTRON MICROSCOPY3.171
28AGX|1|xYeast RQC complex in state with the RING domain of Ltn1 in the IN positionELECTRON MICROSCOPY2.474
38AGZ|1|xYeast RQC complex in state with the RING domain of Ltn1 in the OUT positionELECTRON MICROSCOPY2.674
48AGT|1|xYeast RQC complex in state FELECTRON MICROSCOPY2.674
58AAF|1|xYeast RQC complex in state GELECTRON MICROSCOPY2.574
68AGW|1|xYeast RQC complex in state DELECTRON MICROSCOPY2.674
79OFV|1|xConsensus reconstruction of the eukaryotic Ribosome-associated Quality Control complexELECTRON MICROSCOPY3.1674
88AGV|1|xYeast RQC complex in state HELECTRON MICROSCOPY2.674
98AGT|1|yYeast RQC complex in state FELECTRON MICROSCOPY2.673
109OFV|1|yConsensus reconstruction of the eukaryotic Ribosome-associated Quality Control complexELECTRON MICROSCOPY3.1673
118AGW|1|yYeast RQC complex in state DELECTRON MICROSCOPY2.673
128AGU|1|yYeast RQC complex in state EELECTRON MICROSCOPY2.773
138AGV|1|yYeast RQC complex in state HELECTRON MICROSCOPY2.673
148AGX|1|yYeast RQC complex in state with the RING domain of Ltn1 in the IN positionELECTRON MICROSCOPY2.473
158AGZ|1|yYeast RQC complex in state with the RING domain of Ltn1 in the OUT positionELECTRON MICROSCOPY2.673
168AAF|1|yYeast RQC complex in state GELECTRON MICROSCOPY2.573
177ZW0|1|slFAP-80S Complex - Rotated stateELECTRON MICROSCOPY2.476
186R87|1|BYeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)ELECTRON MICROSCOPY3.476

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

9BDN|1|TIRN:9BDN|1|TIRN = 09BDN|1|TIRN:8AGX|1|x = 0.32479BDN|1|TIRN:8AGZ|1|x = 0.32479BDN|1|TIRN:8AGT|1|x = 0.32329BDN|1|TIRN:8AAF|1|x = 0.32289BDN|1|TIRN:8AGW|1|x = 0.33039BDN|1|TIRN:9OFV|1|x = 0.33039BDN|1|TIRN:8AGV|1|x = 0.34579BDN|1|TIRN:8AGT|1|y = 0.41029BDN|1|TIRN:9OFV|1|y = 0.40559BDN|1|TIRN:8AGW|1|y = 0.40559BDN|1|TIRN:8AGU|1|y = 0.41659BDN|1|TIRN:8AGV|1|y = 0.41769BDN|1|TIRN:8AGX|1|y = 0.44459BDN|1|TIRN:8AGZ|1|y = 0.44459BDN|1|TIRN:8AAF|1|y = 0.44459BDN|1|TIRN:7ZW0|1|sl = 0.47079BDN|1|TIRN:6R87|1|B = 0.50408AGX|1|x:9BDN|1|TIRN = 0.32478AGX|1|x:8AGX|1|x = 08AGX|1|x:8AGZ|1|x = 0.00018AGX|1|x:8AGT|1|x = 0.01458AGX|1|x:8AAF|1|x = 0.01818AGX|1|x:8AGW|1|x = 0.08598AGX|1|x:9OFV|1|x = 0.07948AGX|1|x:8AGV|1|x = 0.11888AGX|1|x:8AGT|1|y = 0.37938AGX|1|x:9OFV|1|y = 0.35028AGX|1|x:8AGW|1|y = 0.40248AGX|1|x:8AGU|1|y = 0.45208AGX|1|x:8AGV|1|y = 0.46338AGX|1|x:8AGX|1|y = 0.47398AGX|1|x:8AGZ|1|y = 0.47398AGX|1|x:8AAF|1|y = 0.47398AGX|1|x:7ZW0|1|sl = 0.43188AGX|1|x:6R87|1|B = 0.44358AGZ|1|x:9BDN|1|TIRN = 0.32478AGZ|1|x:8AGX|1|x = 0.00018AGZ|1|x:8AGZ|1|x = 08AGZ|1|x:8AGT|1|x = 0.01458AGZ|1|x:8AAF|1|x = 0.01818AGZ|1|x:8AGW|1|x = 0.08598AGZ|1|x:9OFV|1|x = 0.07948AGZ|1|x:8AGV|1|x = 0.11888AGZ|1|x:8AGT|1|y = 0.37938AGZ|1|x:9OFV|1|y = 0.35028AGZ|1|x:8AGW|1|y = 0.40248AGZ|1|x:8AGU|1|y = 0.45208AGZ|1|x:8AGV|1|y = 0.46338AGZ|1|x:8AGX|1|y = 0.47398AGZ|1|x:8AGZ|1|y = 0.47398AGZ|1|x:8AAF|1|y = 0.47398AGZ|1|x:7ZW0|1|sl = 0.43188AGZ|1|x:6R87|1|B = 0.44358AGT|1|x:9BDN|1|TIRN = 0.32328AGT|1|x:8AGX|1|x = 0.01458AGT|1|x:8AGZ|1|x = 0.01458AGT|1|x:8AGT|1|x = 08AGT|1|x:8AAF|1|x = 0.01098AGT|1|x:8AGW|1|x = 0.08078AGT|1|x:9OFV|1|x = 0.07458AGT|1|x:8AGV|1|x = 0.11508AGT|1|x:8AGT|1|y = 0.37708AGT|1|x:9OFV|1|y = 0.34908AGT|1|x:8AGW|1|y = 0.39858AGT|1|x:8AGU|1|y = 0.44808AGT|1|x:8AGV|1|y = 0.45958AGT|1|x:8AGX|1|y = 0.47318AGT|1|x:8AGZ|1|y = 0.47318AGT|1|x:8AAF|1|y = 0.47318AGT|1|x:7ZW0|1|sl = 0.43048AGT|1|x:6R87|1|B = 0.45598AAF|1|x:9BDN|1|TIRN = 0.32288AAF|1|x:8AGX|1|x = 0.01818AAF|1|x:8AGZ|1|x = 0.01818AAF|1|x:8AGT|1|x = 0.01098AAF|1|x:8AAF|1|x = 08AAF|1|x:8AGW|1|x = 0.08068AAF|1|x:9OFV|1|x = 0.07518AAF|1|x:8AGV|1|x = 0.11608AAF|1|x:8AGT|1|y = 0.37868AAF|1|x:9OFV|1|y = 0.35088AAF|1|x:8AGW|1|y = 0.40028AAF|1|x:8AGU|1|y = 0.45068AAF|1|x:8AGV|1|y = 0.46188AAF|1|x:8AGX|1|y = 0.47238AAF|1|x:8AGZ|1|y = 0.47238AAF|1|x:8AAF|1|y = 0.47238AAF|1|x:7ZW0|1|sl = 0.42928AAF|1|x:6R87|1|B = 0.44218AGW|1|x:9BDN|1|TIRN = 0.33038AGW|1|x:8AGX|1|x = 0.08598AGW|1|x:8AGZ|1|x = 0.08598AGW|1|x:8AGT|1|x = 0.08078AGW|1|x:8AAF|1|x = 0.08068AGW|1|x:8AGW|1|x = 08AGW|1|x:9OFV|1|x = 0.00018AGW|1|x:8AGV|1|x = 0.09998AGW|1|x:8AGT|1|y = 0.36578AGW|1|x:9OFV|1|y = 0.34038AGW|1|x:8AGW|1|y = 0.38538AGW|1|x:8AGU|1|y = 0.44028AGW|1|x:8AGV|1|y = 0.45308AGW|1|x:8AGX|1|y = 0.46898AGW|1|x:8AGZ|1|y = 0.46898AGW|1|x:8AAF|1|y = 0.46898AGW|1|x:7ZW0|1|sl = 0.42178AGW|1|x:6R87|1|B = 0.45229OFV|1|x:9BDN|1|TIRN = 0.33039OFV|1|x:8AGX|1|x = 0.07949OFV|1|x:8AGZ|1|x = 0.07949OFV|1|x:8AGT|1|x = 0.07459OFV|1|x:8AAF|1|x = 0.07519OFV|1|x:8AGW|1|x = 0.00019OFV|1|x:9OFV|1|x = 09OFV|1|x:8AGV|1|x = 0.09389OFV|1|x:8AGT|1|y = 0.33279OFV|1|x:9OFV|1|y = 0.34039OFV|1|x:8AGW|1|y = 0.34039OFV|1|x:8AGU|1|y = 0.40039OFV|1|x:8AGV|1|y = 0.41639OFV|1|x:8AGX|1|y = 0.42949OFV|1|x:8AGZ|1|y = 0.42949OFV|1|x:8AAF|1|y = 0.42949OFV|1|x:7ZW0|1|sl = 0.38599OFV|1|x:6R87|1|B = 0.41508AGV|1|x:9BDN|1|TIRN = 0.34578AGV|1|x:8AGX|1|x = 0.11888AGV|1|x:8AGZ|1|x = 0.11888AGV|1|x:8AGT|1|x = 0.11508AGV|1|x:8AAF|1|x = 0.11608AGV|1|x:8AGW|1|x = 0.09998AGV|1|x:9OFV|1|x = 0.09388AGV|1|x:8AGV|1|x = 08AGV|1|x:8AGT|1|y = 0.37078AGV|1|x:9OFV|1|y = 0.33658AGV|1|x:8AGW|1|y = 0.38668AGV|1|x:8AGU|1|y = 0.44188AGV|1|x:8AGV|1|y = 0.45218AGV|1|x:8AGX|1|y = 0.47018AGV|1|x:8AGZ|1|y = 0.47018AGV|1|x:8AAF|1|y = 0.47018AGV|1|x:7ZW0|1|sl = 0.43008AGV|1|x:6R87|1|B = 0.46978AGT|1|y:9BDN|1|TIRN = 0.41028AGT|1|y:8AGX|1|x = 0.37938AGT|1|y:8AGZ|1|x = 0.37938AGT|1|y:8AGT|1|x = 0.37708AGT|1|y:8AAF|1|x = 0.37868AGT|1|y:8AGW|1|x = 0.36578AGT|1|y:9OFV|1|x = 0.33278AGT|1|y:8AGV|1|x = 0.37078AGT|1|y:8AGT|1|y = 08AGT|1|y:9OFV|1|y = 0.18918AGT|1|y:8AGW|1|y = 0.20568AGT|1|y:8AGU|1|y = 0.24818AGT|1|y:8AGV|1|y = 0.26608AGT|1|y:8AGX|1|y = 0.27128AGT|1|y:8AGZ|1|y = 0.27128AGT|1|y:8AAF|1|y = 0.27128AGT|1|y:7ZW0|1|sl = 0.32708AGT|1|y:6R87|1|B = 0.44499OFV|1|y:9BDN|1|TIRN = 0.40559OFV|1|y:8AGX|1|x = 0.35029OFV|1|y:8AGZ|1|x = 0.35029OFV|1|y:8AGT|1|x = 0.34909OFV|1|y:8AAF|1|x = 0.35089OFV|1|y:8AGW|1|x = 0.34039OFV|1|y:9OFV|1|x = 0.34039OFV|1|y:8AGV|1|x = 0.33659OFV|1|y:8AGT|1|y = 0.18919OFV|1|y:9OFV|1|y = 09OFV|1|y:8AGW|1|y = 0.00019OFV|1|y:8AGU|1|y = 0.15009OFV|1|y:8AGV|1|y = 0.17209OFV|1|y:8AGX|1|y = 0.19819OFV|1|y:8AGZ|1|y = 0.19819OFV|1|y:8AAF|1|y = 0.19819OFV|1|y:7ZW0|1|sl = 0.31889OFV|1|y:6R87|1|B = 0.41388AGW|1|y:9BDN|1|TIRN = 0.40558AGW|1|y:8AGX|1|x = 0.40248AGW|1|y:8AGZ|1|x = 0.40248AGW|1|y:8AGT|1|x = 0.39858AGW|1|y:8AAF|1|x = 0.40028AGW|1|y:8AGW|1|x = 0.38538AGW|1|y:9OFV|1|x = 0.34038AGW|1|y:8AGV|1|x = 0.38668AGW|1|y:8AGT|1|y = 0.20568AGW|1|y:9OFV|1|y = 0.00018AGW|1|y:8AGW|1|y = 08AGW|1|y:8AGU|1|y = 0.14578AGW|1|y:8AGV|1|y = 0.16758AGW|1|y:8AGX|1|y = 0.19468AGW|1|y:8AGZ|1|y = 0.19468AGW|1|y:8AAF|1|y = 0.19468AGW|1|y:7ZW0|1|sl = 0.30568AGW|1|y:6R87|1|B = 0.42038AGU|1|y:9BDN|1|TIRN = 0.41658AGU|1|y:8AGX|1|x = 0.45208AGU|1|y:8AGZ|1|x = 0.45208AGU|1|y:8AGT|1|x = 0.44808AGU|1|y:8AAF|1|x = 0.45068AGU|1|y:8AGW|1|x = 0.44028AGU|1|y:9OFV|1|x = 0.40038AGU|1|y:8AGV|1|x = 0.44188AGU|1|y:8AGT|1|y = 0.24818AGU|1|y:9OFV|1|y = 0.15008AGU|1|y:8AGW|1|y = 0.14578AGU|1|y:8AGU|1|y = 08AGU|1|y:8AGV|1|y = 0.05738AGU|1|y:8AGX|1|y = 0.12168AGU|1|y:8AGZ|1|y = 0.12168AGU|1|y:8AAF|1|y = 0.12168AGU|1|y:7ZW0|1|sl = 0.32988AGU|1|y:6R87|1|B = 0.45088AGV|1|y:9BDN|1|TIRN = 0.41768AGV|1|y:8AGX|1|x = 0.46338AGV|1|y:8AGZ|1|x = 0.46338AGV|1|y:8AGT|1|x = 0.45958AGV|1|y:8AAF|1|x = 0.46188AGV|1|y:8AGW|1|x = 0.45308AGV|1|y:9OFV|1|x = 0.41638AGV|1|y:8AGV|1|x = 0.45218AGV|1|y:8AGT|1|y = 0.26608AGV|1|y:9OFV|1|y = 0.17208AGV|1|y:8AGW|1|y = 0.16758AGV|1|y:8AGU|1|y = 0.05738AGV|1|y:8AGV|1|y = 08AGV|1|y:8AGX|1|y = 0.12228AGV|1|y:8AGZ|1|y = 0.12228AGV|1|y:8AAF|1|y = 0.12228AGV|1|y:7ZW0|1|sl = 0.34268AGV|1|y:6R87|1|B = 0.46828AGX|1|y:9BDN|1|TIRN = 0.44458AGX|1|y:8AGX|1|x = 0.47398AGX|1|y:8AGZ|1|x = 0.47398AGX|1|y:8AGT|1|x = 0.47318AGX|1|y:8AAF|1|x = 0.47238AGX|1|y:8AGW|1|x = 0.46898AGX|1|y:9OFV|1|x = 0.42948AGX|1|y:8AGV|1|x = 0.47018AGX|1|y:8AGT|1|y = 0.27128AGX|1|y:9OFV|1|y = 0.19818AGX|1|y:8AGW|1|y = 0.19468AGX|1|y:8AGU|1|y = 0.12168AGX|1|y:8AGV|1|y = 0.12228AGX|1|y:8AGX|1|y = 08AGX|1|y:8AGZ|1|y = 0.00018AGX|1|y:8AAF|1|y = 0.00018AGX|1|y:7ZW0|1|sl = 0.33558AGX|1|y:6R87|1|B = 0.43588AGZ|1|y:9BDN|1|TIRN = 0.44458AGZ|1|y:8AGX|1|x = 0.47398AGZ|1|y:8AGZ|1|x = 0.47398AGZ|1|y:8AGT|1|x = 0.47318AGZ|1|y:8AAF|1|x = 0.47238AGZ|1|y:8AGW|1|x = 0.46898AGZ|1|y:9OFV|1|x = 0.42948AGZ|1|y:8AGV|1|x = 0.47018AGZ|1|y:8AGT|1|y = 0.27128AGZ|1|y:9OFV|1|y = 0.19818AGZ|1|y:8AGW|1|y = 0.19468AGZ|1|y:8AGU|1|y = 0.12168AGZ|1|y:8AGV|1|y = 0.12228AGZ|1|y:8AGX|1|y = 0.00018AGZ|1|y:8AGZ|1|y = 08AGZ|1|y:8AAF|1|y = 0.00018AGZ|1|y:7ZW0|1|sl = 0.33558AGZ|1|y:6R87|1|B = 0.43588AAF|1|y:9BDN|1|TIRN = 0.44458AAF|1|y:8AGX|1|x = 0.47398AAF|1|y:8AGZ|1|x = 0.47398AAF|1|y:8AGT|1|x = 0.47318AAF|1|y:8AAF|1|x = 0.47238AAF|1|y:8AGW|1|x = 0.46898AAF|1|y:9OFV|1|x = 0.42948AAF|1|y:8AGV|1|x = 0.47018AAF|1|y:8AGT|1|y = 0.27128AAF|1|y:9OFV|1|y = 0.19818AAF|1|y:8AGW|1|y = 0.19468AAF|1|y:8AGU|1|y = 0.12168AAF|1|y:8AGV|1|y = 0.12228AAF|1|y:8AGX|1|y = 0.00018AAF|1|y:8AGZ|1|y = 0.00018AAF|1|y:8AAF|1|y = 08AAF|1|y:7ZW0|1|sl = 0.33558AAF|1|y:6R87|1|B = 0.43587ZW0|1|sl:9BDN|1|TIRN = 0.47077ZW0|1|sl:8AGX|1|x = 0.43187ZW0|1|sl:8AGZ|1|x = 0.43187ZW0|1|sl:8AGT|1|x = 0.43047ZW0|1|sl:8AAF|1|x = 0.42927ZW0|1|sl:8AGW|1|x = 0.42177ZW0|1|sl:9OFV|1|x = 0.38597ZW0|1|sl:8AGV|1|x = 0.43007ZW0|1|sl:8AGT|1|y = 0.32707ZW0|1|sl:9OFV|1|y = 0.31887ZW0|1|sl:8AGW|1|y = 0.30567ZW0|1|sl:8AGU|1|y = 0.32987ZW0|1|sl:8AGV|1|y = 0.34267ZW0|1|sl:8AGX|1|y = 0.33557ZW0|1|sl:8AGZ|1|y = 0.33557ZW0|1|sl:8AAF|1|y = 0.33557ZW0|1|sl:7ZW0|1|sl = 07ZW0|1|sl:6R87|1|B = 0.28266R87|1|B:9BDN|1|TIRN = 0.50406R87|1|B:8AGX|1|x = 0.44356R87|1|B:8AGZ|1|x = 0.44356R87|1|B:8AGT|1|x = 0.45596R87|1|B:8AAF|1|x = 0.44216R87|1|B:8AGW|1|x = 0.45226R87|1|B:9OFV|1|x = 0.41506R87|1|B:8AGV|1|x = 0.46976R87|1|B:8AGT|1|y = 0.44496R87|1|B:9OFV|1|y = 0.41386R87|1|B:8AGW|1|y = 0.42036R87|1|B:8AGU|1|y = 0.45086R87|1|B:8AGV|1|y = 0.46826R87|1|B:8AGX|1|y = 0.43586R87|1|B:8AGZ|1|y = 0.43586R87|1|B:8AAF|1|y = 0.43586R87|1|B:7ZW0|1|sl = 0.28266R87|1|B:6R87|1|B = 09BDN|1|TIRN8AGX|1|x8AGZ|1|x8AGT|1|x8AAF|1|x8AGW|1|x9OFV|1|x8AGV|1|x8AGT|1|y9OFV|1|y8AGW|1|y8AGU|1|y8AGV|1|y8AGX|1|y8AGZ|1|y8AAF|1|y7ZW0|1|sl6R87|1|BDiscrepancy0.000.100.200.300.400.50

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