Equivalence class NR_3.5_53745.6 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8AAF|1|x (rep) | Transfer RNA | Ala tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast RQC complex in state G | Electron microscopy | 2.5 | 74 | 2023-03-08 |
| 2 | 8AGT|1|y | Transfer RNA | P-site petidyl-tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast RQC complex in state F | Electron microscopy | 2.6 | 73 | 2023-03-08 |
| 3 | 7ZW0|1|sl | Transfer RNA | mRNA, tRNA | Saccharomyces cerevisiae W303 | Eukarya | RF00005 | FAP-80S Complex - Rotated state | Electron microscopy | 2.4 | 76 | 2022-10-05 |
| 4 | 8AGV|1|x | Transfer RNA | Ala tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast RQC complex in state H | Electron microscopy | 2.6 | 74 | 2023-03-08 |
| 5 | 8AGT|1|x | Transfer RNA | A-site Ala aminoacyl-tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast RQC complex in state F | Electron microscopy | 2.6 | 74 | 2023-03-08 |
| 6 | 8AGV|1|y | Transfer RNA | Ala tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast RQC complex in state H | Electron microscopy | 2.6 | 73 | 2023-03-08 |
| 7 | 8AGU|1|y | Transfer RNA | P-site tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast RQC complex in state E | Electron microscopy | 2.7 | 73 | 2023-03-08 |
| 8 | 8AAF|1|y | Transfer RNA | Ala tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast RQC complex in state G | Electron microscopy | 2.5 | 73 | 2023-03-08 |
| 9 | 8AGX|1|y | Transfer RNA | Ala tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast RQC complex in state with the RING domain of Ltn1 in the IN position | Electron microscopy | 2.4 | 73 | 2023-03-08 |
| 10 | 8AGZ|1|y | Transfer RNA | Ala tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position | Electron microscopy | 2.6 | 73 | 2023-03-08 |
| 11 | 8AGW|1|y | Transfer RNA | Ala tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast RQC complex in state D | Electron microscopy | 2.6 | 73 | 2023-03-08 |
| 12 | 8AGZ|1|x | Transfer RNA | Ala tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position | Electron microscopy | 2.6 | 74 | 2023-03-08 |
| 13 | 8AGW|1|x | Transfer RNA | Ala tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast RQC complex in state D | Electron microscopy | 2.6 | 74 | 2023-03-08 |
| 14 | 6R87|1|B | Transfer RNA | tRNA-Ala | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1) | Electron microscopy | 3.4 | 76 | 2019-06-26 |
| 15 | 8AGX|1|x | Transfer RNA | Ala tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast RQC complex in state with the RING domain of Ltn1 in the IN position | Electron microscopy | 2.4 | 74 | 2023-03-08 |
| 16 | 9BDN|1|TIRN | Transfer RNA | tRNAAla | Saccharomyces cerevisiae | Eukarya | RF00005 | 80S ribosome with angiogenin and tRNAAla | Electron microscopy | 3.1 | 71 | 2024-07-24 |
| 17 | 9OFV|1|y | Transfer RNA | Ala tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex | Electron microscopy | 3.16 | 73 | 2025-06-11 |
| 18 | 9OFV|1|x | Transfer RNA | Ala tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex | Electron microscopy | 3.16 | 74 | 2025-06-11 |
| 19 | 9UTW|1|A | Transfer RNA | tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of dimeric FKS1 in complex with tRNA | Electron microscopy | 2.96 | 62 | 2025-12-17 |
Release history
| Release | 4.18 |
|---|---|
| Date | 2025-12-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9BDN|1|TIRN | 80S ribosome with angiogenin and tRNAAla | ELECTRON MICROSCOPY | 3.1 | 71 | |
| 2 | 8AGV|1|x | Yeast RQC complex in state H | ELECTRON MICROSCOPY | 2.6 | 74 | |
| 3 | 8AGW|1|x | Yeast RQC complex in state D | ELECTRON MICROSCOPY | 2.6 | 74 | |
| 4 | 9OFV|1|x | Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex | ELECTRON MICROSCOPY | 3.16 | 74 | |
| 5 | 8AAF|1|x | Yeast RQC complex in state G | ELECTRON MICROSCOPY | 2.5 | 74 | |
| 6 | 8AGT|1|x | Yeast RQC complex in state F | ELECTRON MICROSCOPY | 2.6 | 74 | |
| 7 | 8AGZ|1|x | Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position | ELECTRON MICROSCOPY | 2.6 | 74 | |
| 8 | 8AGX|1|x | Yeast RQC complex in state with the RING domain of Ltn1 in the IN position | ELECTRON MICROSCOPY | 2.4 | 74 | |
| 9 | 9UTW|1|A | Structure of dimeric FKS1 in complex with tRNA | ELECTRON MICROSCOPY | 2.96 | 62 | |
| 10 | 6R87|1|B | Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1) | ELECTRON MICROSCOPY | 3.4 | 76 | |
| 11 | 7ZW0|1|sl | FAP-80S Complex - Rotated state | ELECTRON MICROSCOPY | 2.4 | 76 | |
| 12 | 8AGT|1|y | Yeast RQC complex in state F | ELECTRON MICROSCOPY | 2.6 | 73 | |
| 13 | 9OFV|1|y | Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex | ELECTRON MICROSCOPY | 3.16 | 73 | |
| 14 | 8AGW|1|y | Yeast RQC complex in state D | ELECTRON MICROSCOPY | 2.6 | 73 | |
| 15 | 8AGU|1|y | Yeast RQC complex in state E | ELECTRON MICROSCOPY | 2.7 | 73 | |
| 16 | 8AGV|1|y | Yeast RQC complex in state H | ELECTRON MICROSCOPY | 2.6 | 73 | |
| 17 | 8AGX|1|y | Yeast RQC complex in state with the RING domain of Ltn1 in the IN position | ELECTRON MICROSCOPY | 2.4 | 73 | |
| 18 | 8AAF|1|y | Yeast RQC complex in state G | ELECTRON MICROSCOPY | 2.5 | 73 | |
| 19 | 8AGZ|1|y | Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position | ELECTRON MICROSCOPY | 2.6 | 73 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: