RNA 3D Hub //

Equivalence class NR_3.5_57046.2 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
16YML|1|A+ 6YML|1|B (rep)Chains: A,C, Chains: B,DRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with decarboxylated SAHX-ray diffraction2.17352020-07-22
26YMM|1|A+ 6YMM|1|BChains: A, Chains: B,DRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with SAM from space group P312X-ray diffraction2.2352020-07-22
36YMK|1|A+ 6YMK|1|BChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.03352020-07-22
46YMM|1|C+ 6YMM|1|DChains: A, Chains: B,DRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with SAM from space group P312X-ray diffraction2.2352020-07-22
56YMK|1|F+ 6YMK|1|GChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.03352020-07-22
66YMK|1|M+ 6YMK|1|NChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.03352020-07-22
76YMK|1|O+ 6YMK|1|PChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.03352020-07-22
86YMK|1|C+ 6YMK|1|DChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.03352020-07-22
96YMJ|1|M+ 6YMJ|1|NChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with adenosineX-ray diffraction2.04342020-07-22
106YMI|1|F+ 6YMI|1|GChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.5342020-07-22
116YMI|1|A+ 6YMI|1|BChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.5342020-07-22
126YMI|1|M+ 6YMI|1|NChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.5342020-07-22
136YMK|1|I+ 6YMK|1|JChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.03352020-07-22
146YML|1|C+ 6YML|1|DChains: A,C, Chains: B,DRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with decarboxylated SAHX-ray diffraction2.17352020-07-22
156YMJ|1|F+ 6YMJ|1|GChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with adenosineX-ray diffraction2.04342020-07-22
166YMJ|1|A+ 6YMJ|1|BChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with adenosineX-ray diffraction2.04342020-07-22
176YLB|1|M+ 6YLB|1|NChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with SAMX-ray diffraction2.12352020-07-22
186YLB|1|A+ 6YLB|1|BChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with SAMX-ray diffraction2.12352020-07-22
196YLB|1|I+ 6YLB|1|JChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with SAMX-ray diffraction2.12352020-07-22
206YLB|1|F+ 6YLB|1|GChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with SAMX-ray diffraction2.12352020-07-22
216YMI|1|C+ 6YMI|1|DChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.5342020-07-22
226YMJ|1|C+ 6YMJ|1|DChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with adenosineX-ray diffraction2.04342020-07-22
236YLB|1|O+ 6YLB|1|PChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with SAMX-ray diffraction2.12352020-07-22
246YLB|1|C+ 6YLB|1|DChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with SAMX-ray diffraction2.12352020-07-22
256YMI|1|I+ 6YMI|1|JChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.5342020-07-22
266YMI|1|O+ 6YMI|1|PChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.5342020-07-22
276YMJ|1|I+ 6YMJ|1|JChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with adenosineX-ray diffraction2.04342020-07-22
286YMJ|1|O+ 6YMJ|1|PChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with adenosineX-ray diffraction2.04342020-07-22

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.389
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-28

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
16YMK|1|A+ 6YMK|1|BCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.0335
26YLB|1|A+ 6YLB|1|BCrystal structure of the SAM-SAH riboswitch with SAMX-RAY DIFFRACTION2.1235
36YLB|1|F+ 6YLB|1|GCrystal structure of the SAM-SAH riboswitch with SAMX-RAY DIFFRACTION2.1235
46YMK|1|M+ 6YMK|1|NCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.0335
56YLB|1|M+ 6YLB|1|NCrystal structure of the SAM-SAH riboswitch with SAMX-RAY DIFFRACTION2.1235
66YML|1|A+ 6YML|1|BCrystal structure of the SAM-SAH riboswitch with decarboxylated SAHX-RAY DIFFRACTION2.1735
76YMM|1|A+ 6YMM|1|BCrystal structure of the SAM-SAH riboswitch with SAM from space group P312X-RAY DIFFRACTION2.235
86YMK|1|F+ 6YMK|1|GCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.0335
96YMJ|1|F+ 6YMJ|1|GCrystal structure of the SAM-SAH riboswitch with adenosineX-RAY DIFFRACTION2.0434
106YMJ|1|M+ 6YMJ|1|NCrystal structure of the SAM-SAH riboswitch with adenosineX-RAY DIFFRACTION2.0434
116YMI|1|M+ 6YMI|1|NCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.534
126YMI|1|F+ 6YMI|1|GCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.534
136YMI|1|A+ 6YMI|1|BCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.534
146YMJ|1|A+ 6YMJ|1|BCrystal structure of the SAM-SAH riboswitch with adenosineX-RAY DIFFRACTION2.0434
156YMM|1|C+ 6YMM|1|DCrystal structure of the SAM-SAH riboswitch with SAM from space group P312X-RAY DIFFRACTION2.235
166YML|1|C+ 6YML|1|DCrystal structure of the SAM-SAH riboswitch with decarboxylated SAHX-RAY DIFFRACTION2.1735
176YLB|1|C+ 6YLB|1|DCrystal structure of the SAM-SAH riboswitch with SAMX-RAY DIFFRACTION2.1235
186YMK|1|C+ 6YMK|1|DCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.0335
196YMJ|1|C+ 6YMJ|1|DCrystal structure of the SAM-SAH riboswitch with adenosineX-RAY DIFFRACTION2.0434
206YMI|1|C+ 6YMI|1|DCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.534
216YMI|1|I+ 6YMI|1|JCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.534
226YMI|1|O+ 6YMI|1|PCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.534
236YMJ|1|I+ 6YMJ|1|JCrystal structure of the SAM-SAH riboswitch with adenosineX-RAY DIFFRACTION2.0434
246YMJ|1|O+ 6YMJ|1|PCrystal structure of the SAM-SAH riboswitch with adenosineX-RAY DIFFRACTION2.0434
256YLB|1|I+ 6YLB|1|JCrystal structure of the SAM-SAH riboswitch with SAMX-RAY DIFFRACTION2.1235
266YLB|1|O+ 6YLB|1|PCrystal structure of the SAM-SAH riboswitch with SAMX-RAY DIFFRACTION2.1235
276YMK|1|O+ 6YMK|1|PCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.0335
286YMK|1|I+ 6YMK|1|JCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.0335

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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