NR_3.5_65061.24

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	8GLP\|1\|L5+ 8GLP\|1\|L8 (rep)	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)	Electron microscopy	1.67	3702	2023-04-19
2	8A3D\|1\|A+ 8A3D\|1\|C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound	Electron microscopy	1.67	3451	2023-03-08
3	8G5Y\|1\|L5+ 8G5Y\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)	Electron microscopy	2.29	3877	2023-04-19
4	8JDK\|1\|D	Large subunit ribosomal RNA	28S ribosomal RNA	Homo sapiens	Eukarya	RF02543	Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	Electron microscopy	2.26	3399	2023-12-06
5	7XNY\|1\|L1+ 7XNY\|1\|L3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells	Electron microscopy	2.5	3929	2023-04-05
6	6ZMI\|1\|L5+ 6ZMI\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex	Electron microscopy	2.6	3929	2020-08-19
7	7OW7\|1\|A+ 7OW7\|1\|C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	EIF6-bound large subunit of the human ribosome	Electron microscopy	2.2	3451	2022-10-05
8	8JDL\|1\|D	Large subunit ribosomal RNA	28S ribosomal RNA	Homo sapiens	Eukarya	RF02543	Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)	Electron microscopy	2.42	3399	2023-12-06
9	6ZM7\|1\|L5+ 6ZM7\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex	Electron microscopy	2.7	3929	2020-07-29
10	8G60\|1\|L5+ 8G60\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)	Electron microscopy	2.54	3793	2023-04-19
11	7XNX\|1\|L1+ 7XNX\|1\|L3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells	Electron microscopy	2.7	3929	2023-04-05
12	8JDJ\|1\|D	Large subunit ribosomal RNA	28S ribosomal RNA	Homo sapiens	Eukarya	RF02543	Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)	Electron microscopy	2.5	3399	2023-12-06
13	8G5Z\|1\|L5+ 8G5Z\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)	Electron microscopy	2.64	3843	2023-04-19
14	7F5S\|1\|L5+ 7F5S\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	human delta-METTL18 60S ribosome	Electron microscopy	2.72	3871	2022-06-22
15	8FL3\|1\|L3+ 8FL3\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State I2)	Electron microscopy	2.53	3648	2023-07-12
16	6Y6X\|1\|L5+ 6Y6X\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Tetracenomycin X bound to the human ribosome	Electron microscopy	2.8	3929	2020-07-08
17	6Z6N\|1\|L5+ 6Z6N\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)	Electron microscopy	2.9	3928	2020-07-29
18	8FLE\|1\|L3+ 8FLE\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State L2)	Electron microscopy	2.48	3526	2023-07-12
19	8FLB\|1\|L3+ 8FLB\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State K2)	Electron microscopy	2.55	3574	2023-07-12
20	8JDM\|1\|D	Large subunit ribosomal RNA	28S ribosomal RNA	Homo sapiens	Eukarya	RF02543	Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)	Electron microscopy	2.67	3399	2023-12-06
21	8FL7\|1\|L3+ 8FL7\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State J2)	Electron microscopy	2.55	3563	2023-07-12
22	8G6J\|1\|L5+ 8G6J\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)	Electron microscopy	2.8	3843	2023-04-19
23	6QZP\|1\|L5+ 6QZP\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA (3773-MER), 5.8S rRNA (156-MER)	Homo sapiens	Eukarya	RF02543 + RF00002	High-resolution cryo-EM structure of the human 80S ribosome	Electron microscopy	2.9	3929	2019-04-24
24	6ZME\|1\|L5+ 6ZME\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex	Electron microscopy	3	3929	2020-08-12
25	6Z6L\|1\|L5+ 6Z6L\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Cryo-EM structure of human CCDC124 bound to 80S ribosomes	Electron microscopy	3	3928	2020-07-29
26	7QVP\|1\|L5+ 7QVP\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human collided disome (di-ribosome) stalled on XBP1 mRNA	Electron microscopy	3	3767	2022-10-12
27	8FLD\|1\|L3+ 8FLD\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State L1)	Electron microscopy	2.58	3526	2023-07-12
28	8FL6\|1\|L3+ 8FL6\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State J1)	Electron microscopy	2.62	3559	2023-07-12
29	8FLA\|1\|L3+ 8FLA\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State K1)	Electron microscopy	2.63	3574	2023-07-12
30	8FL2\|1\|L3+ 8FL2\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State I1)	Electron microscopy	2.67	3649	2023-07-12
31	7QVP\|1\|L6+ 7QVP\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human collided disome (di-ribosome) stalled on XBP1 mRNA	Electron microscopy	3	3728	2022-10-12
32	8IDT\|1\|2+ 8IDT\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	human nuclear pre-60S ribosomal particle - State G	Electron microscopy	2.8	3680	2023-08-09
33	6XA1\|1\|L5+ 6XA1\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Structure of a drug-like compound stalled human translation termination complex	Electron microscopy	2.8	3665	2020-10-07
34	6ZMO\|1\|L5+ 6ZMO\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex	Electron microscopy	3.1	3929	2020-08-19
35	6Z6M\|1\|L5+ 6Z6M\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1	Electron microscopy	3.1	3928	2020-07-29
36	8FLF\|1\|L3+ 8FLF\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State L3)	Electron microscopy	2.65	3479	2023-07-12
37	8G61\|1\|L5+ 8G61\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)	Electron microscopy	2.94	3813	2023-04-19
38	8INF\|1\|2+ 8INF\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	human nuclear pre-60S ribosomal particle - State F'	Electron microscopy	3	3808	2023-08-09
39	8IDY\|1\|2+ 8IDY\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	human nuclear pre-60S ribosomal particle - State F	Electron microscopy	3	3797	2023-08-09
40	8FL9\|1\|L3+ 8FL9\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State J3)	Electron microscopy	2.75	3515	2023-07-12
41	8FLC\|1\|L3+ 8FLC\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State K3)	Electron microscopy	2.76	3527	2023-07-12
42	6OLE\|1\|t+ 6OLE\|1\|D	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs	Electron microscopy	3.1	3764	2019-06-19
43	6OM0\|1\|t+ 6OM0\|1\|D	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs	Electron microscopy	3.1	3764	2019-06-19
44	6Y2L\|1\|L5+ 6Y2L\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Structure of human ribosome in POST state	Electron microscopy	3	3769	2020-04-15
45	8FL4\|1\|L3+ 8FL4\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nuclear pre-60S ribosomal subunit (State I3)	Electron microscopy	2.89	3640	2023-07-12
46	6LQM\|1\|2+ 6LQM\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Cryo-EM structure of a pre-60S ribosomal subunit - state C	Electron microscopy	3.09	3688	2020-08-26
47	6Y0G\|1\|L5+ 6Y0G\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Structure of human ribosome in classical-PRE state	Electron microscopy	3.2	3800	2020-04-15
48	8Y0X\|1\|L5	Large subunit ribosomal RNA	28S rRNA	Homo sapiens	Eukarya	RF02543	Dormant ribosome with SERBP1	Electron microscopy	3.3	3658	2024-02-07
49	7BHP\|1\|L5+ 7BHP\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Cryo-EM structure of the human Ebp1 - 80S ribosome	Electron microscopy	3.3	3800	2021-02-03
50	6LU8\|1\|2+ 6LU8\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Cryo-EM structure of a human pre-60S ribosomal subunit - state A	Electron microscopy	3.13	3633	2020-08-26
51	6LSR\|1\|2+ 6LSR\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Cryo-EM structure of a pre-60S ribosomal subunit - state B	Electron microscopy	3.13	3637	2020-08-26
52	8INE\|1\|2+ 8INE\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	human nuclear pre-60S ribosomal particle - State G'	Electron microscopy	3.2	3692	2023-08-09
53	8INK\|1\|2+ 8INK\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	human nuclear pre-60S ribosomal particle - State D	Electron microscopy	3.2	3651	2023-08-09
54	8IPY\|1\|2+ 8IPY\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	human nuclear pre-60S ribosomal particle - State D'	Electron microscopy	3.2	3641	2023-08-09
55	8IPD\|1\|2+ 8IPD\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	human nuclear pre-60S ribosomal particle - State C	Electron microscopy	3.2	3641	2023-08-09
56	8Y0W\|1\|L5	Large subunit ribosomal RNA	28S rRNA	Homo sapiens	Eukarya	RF02543	dormant ribosome with eIF5A, eEF2 and SERBP1	Electron microscopy	3.4	3666	2024-02-07
57	6LSS\|1\|2+ 6LSS\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Cryo-EM structure of a pre-60S ribosomal subunit - state preA	Electron microscopy	3.23	3630	2020-08-26
58	8IE3\|1\|2+ 8IE3\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	human nuclear pre-60S ribosomal particle - State E	Electron microscopy	3.3	3675	2023-08-09
59	8FKY\|1\|L3+ 8FKY\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State F)	Electron microscopy	2.67	2740	2023-07-12
60	6OLI\|1\|t+ 6OLI\|1\|D	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)	Electron microscopy	3.5	3764	2019-06-19
61	6OLG\|1\|A2+ 6OLG\|1\|A3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)	Electron microscopy	3.4	3769	2019-06-19
62	8FKW\|1\|L3+ 8FKW\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State D2)	Electron microscopy	2.5	2429	2023-07-12
63	8IR1\|1\|2+ 8IR1\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRMA	Homo sapiens	Eukarya	RF02543 + RF00002	human nuclear pre-60S ribosomal particle - State A	Electron microscopy	3.3	3524	2023-08-09
64	8FKV\|1\|L3+ 8FKV\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State D1)	Electron microscopy	2.47	2365	2023-07-12
65	8IR3\|1\|2+ 8IR3\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	human nuclear pre-60S ribosomal particle - State B'	Electron microscopy	3.5	3696	2023-08-09
66	6Y57\|1\|L5+ 6Y57\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Structure of human ribosome in hybrid-PRE state	Electron microscopy	3.5	3730	2020-04-15
67	8FKX\|1\|L3+ 8FKX\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State E)	Electron microscopy	2.59	2402	2023-07-12
68	8FKZ\|1\|L3+ 8FKZ\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State G)	Electron microscopy	3.04	2987	2023-07-12
69	8FKU\|1\|L3+ 8FKU\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State C2)	Electron microscopy	2.82	2337	2023-07-12
70	8FKT\|1\|L3+ 8FKT\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State C1)	Electron microscopy	2.81	2277	2023-07-12
71	8BF9\|1\|5	Large subunit ribosomal RNA	RNA (1766)	Ovis aries	Eukarya	RF02543	Molecular view of ER membrane remodeling by the Sec61/TRAP translocon.	Electron microscopy	2.69	1766	2023-11-01
72	5AJ0\|1\|A2+ 5AJ0\|1\|A3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Homo sapiens	Eukarya	RF02543 + RF00002	Cryo electron microscopy of actively translating human polysomes (POST state).	Electron microscopy	3.5	3769	2015-05-20
73	8FKS\|1\|L3+ 8FKS\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State B2)	Electron microscopy	2.88	1976	2023-07-12
74	8FKR\|1\|L3+ 8FKR\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State B1)	Electron microscopy	2.89	1921	2023-07-12
75	8FKQ\|1\|L3+ 8FKQ\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State A2)	Electron microscopy	2.76	1715	2023-07-12
76	8FKP\|1\|L3+ 8FKP\|1\|L1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Homo sapiens	Eukarya	RF02543 + RF00002	Human nucleolar pre-60S ribosomal subunit (State A1)	Electron microscopy	2.85	1659	2023-07-12
77	8FL0\|1\|L3	Large subunit ribosomal RNA	28S rRNA	Homo sapiens	Eukarya	RF02543	Human nucleolar pre-60S ribosomal subunit (State H)	Electron microscopy	2.91	1558	2023-07-12
78	6SXO\|1\|L5	Large subunit ribosomal RNA	28S ribosomal RNA including ES27L-B (2839-3265)	Homo sapiens	Eukarya	RF02543	Cryo-EM structure of the human Ebp1-ribosome complex	Electron microscopy	3.3	268	2020-02-19

Release history

Release	3.321
Date	2024-02-07

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	6SXO\|1\|L5	Cryo-EM structure of the human Ebp1-ribosome complex	ELECTRON MICROSCOPY	3.3	268
2	5AJ0\|1\|A2+ 5AJ0\|1\|A3	Cryo electron microscopy of actively translating human polysomes (POST state).	ELECTRON MICROSCOPY	3.5	3769
3	6OLG\|1\|A2+ 6OLG\|1\|A3	Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)	ELECTRON MICROSCOPY	3.4	3769
4	6OLI\|1\|t+ 6OLI\|1\|D	Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)	ELECTRON MICROSCOPY	3.5	3764
5	6OLE\|1\|t+ 6OLE\|1\|D	Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs	ELECTRON MICROSCOPY	3.1	3764
6	6OM0\|1\|t+ 6OM0\|1\|D	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs	ELECTRON MICROSCOPY	3.1	3764
7	8JDM\|1\|D	Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)	ELECTRON MICROSCOPY	2.67	3399
8	8JDL\|1\|D	Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)	ELECTRON MICROSCOPY	2.42	3399
9	8JDJ\|1\|D	Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)	ELECTRON MICROSCOPY	2.5	3399
10	8JDK\|1\|D	Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	ELECTRON MICROSCOPY	2.26	3399
11	7BHP\|1\|L5+ 7BHP\|1\|L8	Cryo-EM structure of the human Ebp1 - 80S ribosome	ELECTRON MICROSCOPY	3.3	3800
12	7QVP\|1\|L5+ 7QVP\|1\|L8	Human collided disome (di-ribosome) stalled on XBP1 mRNA	ELECTRON MICROSCOPY	3	3767
13	6Y2L\|1\|L5+ 6Y2L\|1\|L8	Structure of human ribosome in POST state	ELECTRON MICROSCOPY	3	3769
14	6Y0G\|1\|L5+ 6Y0G\|1\|L8	Structure of human ribosome in classical-PRE state	ELECTRON MICROSCOPY	3.2	3800
15	6Y57\|1\|L5+ 6Y57\|1\|L8	Structure of human ribosome in hybrid-PRE state	ELECTRON MICROSCOPY	3.5	3730
16	7QVP\|1\|L6+ 7QVP\|1\|L1	Human collided disome (di-ribosome) stalled on XBP1 mRNA	ELECTRON MICROSCOPY	3	3728
17	7XNX\|1\|L1+ 7XNX\|1\|L3	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells	ELECTRON MICROSCOPY	2.7	3929
18	7XNY\|1\|L1+ 7XNY\|1\|L3	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells	ELECTRON MICROSCOPY	2.5	3929
19	6ZM7\|1\|L5+ 6ZM7\|1\|L8	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex	ELECTRON MICROSCOPY	2.7	3929
20	6ZMI\|1\|L5+ 6ZMI\|1\|L8	SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex	ELECTRON MICROSCOPY	2.6	3929
21	6ZMO\|1\|L5+ 6ZMO\|1\|L8	SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex	ELECTRON MICROSCOPY	3.1	3929
22	6ZME\|1\|L5+ 6ZME\|1\|L8	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex	ELECTRON MICROSCOPY	3	3929
23	8Y0W\|1\|L5	dormant ribosome with eIF5A, eEF2 and SERBP1	ELECTRON MICROSCOPY	3.4	3666
24	8Y0X\|1\|L5	Dormant ribosome with SERBP1	ELECTRON MICROSCOPY	3.3	3658
25	6Z6M\|1\|L5+ 6Z6M\|1\|L8	Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1	ELECTRON MICROSCOPY	3.1	3928
26	6Z6L\|1\|L5+ 6Z6L\|1\|L8	Cryo-EM structure of human CCDC124 bound to 80S ribosomes	ELECTRON MICROSCOPY	3	3928
27	6Z6N\|1\|L5+ 6Z6N\|1\|L8	Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)	ELECTRON MICROSCOPY	2.9	3928
28	6Y6X\|1\|L5+ 6Y6X\|1\|L8	Tetracenomycin X bound to the human ribosome	ELECTRON MICROSCOPY	2.8	3929
29	6QZP\|1\|L5+ 6QZP\|1\|L8	High-resolution cryo-EM structure of the human 80S ribosome	ELECTRON MICROSCOPY	2.9	3929
30	7F5S\|1\|L5+ 7F5S\|1\|L8	human delta-METTL18 60S ribosome	ELECTRON MICROSCOPY	2.72	3871
31	6XA1\|1\|L5+ 6XA1\|1\|L8	Structure of a drug-like compound stalled human translation termination complex	ELECTRON MICROSCOPY	2.8	3665
32	7OW7\|1\|A+ 7OW7\|1\|C	EIF6-bound large subunit of the human ribosome	ELECTRON MICROSCOPY	2.2	3451
33	8A3D\|1\|A+ 8A3D\|1\|C	Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound	ELECTRON MICROSCOPY	1.67	3451
34	8G60\|1\|L5+ 8G60\|1\|L8	mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)	ELECTRON MICROSCOPY	2.54	3793
35	8GLP\|1\|L5+ 8GLP\|1\|L8	mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)	ELECTRON MICROSCOPY	1.67	3702
36	8G5Y\|1\|L5+ 8G5Y\|1\|L8	mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)	ELECTRON MICROSCOPY	2.29	3877
37	8G61\|1\|L5+ 8G61\|1\|L8	mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)	ELECTRON MICROSCOPY	2.94	3813
38	8G5Z\|1\|L5+ 8G5Z\|1\|L8	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)	ELECTRON MICROSCOPY	2.64	3843
39	8G6J\|1\|L5+ 8G6J\|1\|L8	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)	ELECTRON MICROSCOPY	2.8	3843
40	6LQM\|1\|2+ 6LQM\|1\|8	Cryo-EM structure of a pre-60S ribosomal subunit - state C	ELECTRON MICROSCOPY	3.09	3688
41	6LSR\|1\|2+ 6LSR\|1\|8	Cryo-EM structure of a pre-60S ribosomal subunit - state B	ELECTRON MICROSCOPY	3.13	3637
42	6LU8\|1\|2+ 6LU8\|1\|8	Cryo-EM structure of a human pre-60S ribosomal subunit - state A	ELECTRON MICROSCOPY	3.13	3633
43	6LSS\|1\|2+ 6LSS\|1\|8	Cryo-EM structure of a pre-60S ribosomal subunit - state preA	ELECTRON MICROSCOPY	3.23	3630
44	8IDT\|1\|2+ 8IDT\|1\|8	human nuclear pre-60S ribosomal particle - State G	ELECTRON MICROSCOPY	2.8	3680
45	8IDY\|1\|2+ 8IDY\|1\|8	human nuclear pre-60S ribosomal particle - State F	ELECTRON MICROSCOPY	3	3797
46	8IE3\|1\|2+ 8IE3\|1\|8	human nuclear pre-60S ribosomal particle - State E	ELECTRON MICROSCOPY	3.3	3675
47	8INE\|1\|2+ 8INE\|1\|8	human nuclear pre-60S ribosomal particle - State G'	ELECTRON MICROSCOPY	3.2	3692
48	8INF\|1\|2+ 8INF\|1\|8	human nuclear pre-60S ribosomal particle - State F'	ELECTRON MICROSCOPY	3	3808
49	8FLA\|1\|L3+ 8FLA\|1\|L1	Human nuclear pre-60S ribosomal subunit (State K1)	ELECTRON MICROSCOPY	2.63	3574
50	8FLB\|1\|L3+ 8FLB\|1\|L1	Human nuclear pre-60S ribosomal subunit (State K2)	ELECTRON MICROSCOPY	2.55	3574
51	8FLF\|1\|L3+ 8FLF\|1\|L1	Human nuclear pre-60S ribosomal subunit (State L3)	ELECTRON MICROSCOPY	2.65	3479
52	8FLE\|1\|L3+ 8FLE\|1\|L1	Human nuclear pre-60S ribosomal subunit (State L2)	ELECTRON MICROSCOPY	2.48	3526
53	8FLD\|1\|L3+ 8FLD\|1\|L1	Human nuclear pre-60S ribosomal subunit (State L1)	ELECTRON MICROSCOPY	2.58	3526
54	8FL7\|1\|L3+ 8FL7\|1\|L1	Human nuclear pre-60S ribosomal subunit (State J2)	ELECTRON MICROSCOPY	2.55	3563
55	8FL6\|1\|L3+ 8FL6\|1\|L1	Human nuclear pre-60S ribosomal subunit (State J1)	ELECTRON MICROSCOPY	2.62	3559
56	8FL9\|1\|L3+ 8FL9\|1\|L1	Human nuclear pre-60S ribosomal subunit (State J3)	ELECTRON MICROSCOPY	2.75	3515
57	8FLC\|1\|L3+ 8FLC\|1\|L1	Human nuclear pre-60S ribosomal subunit (State K3)	ELECTRON MICROSCOPY	2.76	3527
58	8IPD\|1\|2+ 8IPD\|1\|8	human nuclear pre-60S ribosomal particle - State C	ELECTRON MICROSCOPY	3.2	3641
59	8INK\|1\|2+ 8INK\|1\|8	human nuclear pre-60S ribosomal particle - State D	ELECTRON MICROSCOPY	3.2	3651
60	8IPY\|1\|2+ 8IPY\|1\|8	human nuclear pre-60S ribosomal particle - State D'	ELECTRON MICROSCOPY	3.2	3641
61	8FL4\|1\|L3+ 8FL4\|1\|L1	Human nuclear pre-60S ribosomal subunit (State I3)	ELECTRON MICROSCOPY	2.89	3640
62	8FL3\|1\|L3+ 8FL3\|1\|L1	Human nuclear pre-60S ribosomal subunit (State I2)	ELECTRON MICROSCOPY	2.53	3648
63	8FL2\|1\|L3+ 8FL2\|1\|L1	Human nuclear pre-60S ribosomal subunit (State I1)	ELECTRON MICROSCOPY	2.67	3649
64	8FKZ\|1\|L3+ 8FKZ\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State G)	ELECTRON MICROSCOPY	3.04	2987
65	8IR1\|1\|2+ 8IR1\|1\|8	human nuclear pre-60S ribosomal particle - State A	ELECTRON MICROSCOPY	3.3	3524
66	8IR3\|1\|2+ 8IR3\|1\|8	human nuclear pre-60S ribosomal particle - State B'	ELECTRON MICROSCOPY	3.5	3696
67	8FKY\|1\|L3+ 8FKY\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State F)	ELECTRON MICROSCOPY	2.67	2740
68	8FKX\|1\|L3+ 8FKX\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State E)	ELECTRON MICROSCOPY	2.59	2402
69	8FKU\|1\|L3+ 8FKU\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State C2)	ELECTRON MICROSCOPY	2.82	2337
70	8FKW\|1\|L3+ 8FKW\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State D2)	ELECTRON MICROSCOPY	2.5	2429
71	8FKV\|1\|L3+ 8FKV\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State D1)	ELECTRON MICROSCOPY	2.47	2365
72	8FKT\|1\|L3+ 8FKT\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State C1)	ELECTRON MICROSCOPY	2.81	2277
73	8FL0\|1\|L3	Human nucleolar pre-60S ribosomal subunit (State H)	ELECTRON MICROSCOPY	2.91	1558
74	8FKS\|1\|L3+ 8FKS\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State B2)	ELECTRON MICROSCOPY	2.88	1976
75	8FKQ\|1\|L3+ 8FKQ\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State A2)	ELECTRON MICROSCOPY	2.76	1715
76	8FKR\|1\|L3+ 8FKR\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State B1)	ELECTRON MICROSCOPY	2.89	1921
77	8FKP\|1\|L3+ 8FKP\|1\|L1	Human nucleolar pre-60S ribosomal subunit (State A1)	ELECTRON MICROSCOPY	2.85	1659
78	8BF9\|1\|5	Molecular view of ER membrane remodeling by the Sec61/TRAP translocon.	ELECTRON MICROSCOPY	2.69	1766

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_3.5_65061.24 Obsolete

Release history

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