#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
16Q1H|1|D (rep)RNA (5'-R(P*AP*AP*A)-3')Pseudomonas aeruginosaStructure of P. aeruginosa ATCC27853 NucC, cAAA-bound formX-ray diffraction1.4532019-12-25
26Q1H|1|HRNA (5'-R(P*AP*AP*A)-3')Pseudomonas aeruginosaStructure of P. aeruginosa ATCC27853 NucC, cAAA-bound formX-ray diffraction1.4532019-12-25
36P7P|1|FCyclic tri-AMP (5'-3' linked)Escherichia coliStructure of E. coli MS115-1 NucC, cAAA-bound formX-ray diffraction1.6632019-12-25
46P7P|1|ECyclic tri-AMP (5'-3' linked)Escherichia coliStructure of E. coli MS115-1 NucC, cAAA-bound formX-ray diffraction1.6632019-12-25
56P7P|1|DCyclic tri-AMP (5'-3' linked)Escherichia coliStructure of E. coli MS115-1 NucC, cAAA-bound formX-ray diffraction1.6632019-12-25
67ZGV|1|DRNA (5'-R(P*AP*AP*A)-3')SerratiaSerratia NucC bound to cA3X-ray diffraction1.4832022-10-26
77SOQ|1|BRNA (5'-R(*AP*AP*A)-3')synthetic constructLaM domain of human LARP1 in complex with AAA RNAX-ray diffraction1.1532022-08-03
87SOR|1|DRNA (5'-R(*AP*AP*A)-3')synthetic constructLaM domain of human LARP1 in complex with AAA RNAX-ray diffraction1.3532022-08-03
97SOR|1|BRNA (5'-R(*AP*AP*A)-3')synthetic constructLaM domain of human LARP1 in complex with AAA RNAX-ray diffraction1.3532022-08-03
108KBH|1|J(2-ACETYL-5-METHYLANILINO)(2,6-DIBROMOPHENYL)ACETAMIDEsynthetic constructStructure of CbTad1 complexed with 2',3'-cGAMP and cA3X-ray diffraction1.5432024-08-21
118KBH|1|L(2-ACETYL-5-METHYLANILINO)(2,6-DIBROMOPHENYL)ACETAMIDEsynthetic constructStructure of CbTad1 complexed with 2',3'-cGAMP and cA3X-ray diffraction1.5432024-08-21
126VM6|1|J2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3')synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-ray diffraction2.132020-06-17
138KBH|1|K(2-ACETYL-5-METHYLANILINO)(2,6-DIBROMOPHENYL)ACETAMIDEsynthetic constructStructure of CbTad1 complexed with 2',3'-cGAMP and cA3X-ray diffraction1.5432024-08-21
146VM6|1|G2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3')synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-ray diffraction2.132020-06-17
159ZWR|1|F5'-OH RNA (5'-r(ApApA)-3') or 5'-phosphorylated RNA (5'-r(pApApA)-3')synthetic constructCrystal structure of the N4BP2 polynucleotide kinase domain complexed with ATP or ADP, Mg, and the trinucleotide substrate AAA or its 5'-phosphorylated product pAAA.X-ray diffraction2.332026-09-23
169ZWR|1|E5'-OH RNA (5'-r(ApApA)-3') or 5'-phosphorylated RNA (5'-r(pApApA)-3')synthetic constructCrystal structure of the N4BP2 polynucleotide kinase domain complexed with ATP or ADP, Mg, and the trinucleotide substrate AAA or its 5'-phosphorylated product pAAA.X-ray diffraction2.332026-09-23
176WAN|1|KCyclic RNA (R(P*AP*AP*A)synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-ray diffraction2.432020-06-17
189ZWR|1|D5'-OH RNA (5'-r(ApApA)-3') or 5'-phosphorylated RNA (5'-r(pApApA)-3')synthetic constructCrystal structure of the N4BP2 polynucleotide kinase domain complexed with ATP or ADP, Mg, and the trinucleotide substrate AAA or its 5'-phosphorylated product pAAA.X-ray diffraction2.332026-09-23
198KBF|1|D(2-ACETYL-5-METHYLANILINO)(2,6-DIBROMOPHENYL)ACETAMIDEsynthetic constructStructure of CbTad1 complexed with 1',3'-cADPR and cA3X-ray diffraction2.3132024-08-07
206WAN|1|HCyclic RNA (R(P*AP*AP*A)synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-ray diffraction2.432020-06-17
216WAN|1|GCyclic RNA (R(P*AP*AP*A)synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-ray diffraction2.432020-06-17
226WAN|1|LCyclic RNA (R(P*AP*AP*A)synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-ray diffraction2.432020-06-17
236WAN|1|ICyclic RNA (R(P*AP*AP*A)synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-ray diffraction2.432020-06-17
248KBF|1|C(2-ACETYL-5-METHYLANILINO)(2,6-DIBROMOPHENYL)ACETAMIDEsynthetic constructStructure of CbTad1 complexed with 1',3'-cADPR and cA3X-ray diffraction2.3132024-08-07
256YWO|1|FRNA (5'-R(*AP*AP*A)-3')synthetic constructCutA in complex with A3 RNAX-ray diffraction1.932020-08-05
268TL0|1|FRNA (5'-R(*AP*AP*A)-3')synthetic constructStructure of activated SAVED-CHAT filamentElectron microscopy3.132024-03-06
278TL0|1|HRNA (5'-R(*AP*AP*A)-3')synthetic constructStructure of activated SAVED-CHAT filamentElectron microscopy3.132024-03-06
286WAN|1|JCyclic RNA (R(P*AP*AP*A)synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-ray diffraction2.432020-06-17
296YWO|1|ERNA (5'-R(*AP*AP*A)-3')synthetic constructCutA in complex with A3 RNAX-ray diffraction1.932020-08-05
308TL0|1|ERNA (5'-R(*AP*AP*A)-3')synthetic constructStructure of activated SAVED-CHAT filamentElectron microscopy3.132024-03-06
318TL0|1|GRNA (5'-R(*AP*AP*A)-3')synthetic constructStructure of activated SAVED-CHAT filamentElectron microscopy3.132024-03-06
324OAU|1|ARNA (5'-R(P*A*AP*A)-2')Complete human RNase L in complex with biological activators.X-ray diffraction2.632014-03-12
336YWO|1|KRNA (5'-R(*AP*AP*A)-3')synthetic constructCutA in complex with A3 RNAX-ray diffraction1.932020-08-05
348TL0|1|MRNA (5'-R(*AP*AP*A)-3')synthetic constructStructure of activated SAVED-CHAT filamentElectron microscopy3.132024-03-06
356VM6|1|I2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3')synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-ray diffraction2.132020-06-17
366VM6|1|H2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3')synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-ray diffraction2.132020-06-17
378TL0|1|JRNA (5'-R(*AP*AP*A)-3')synthetic constructStructure of activated SAVED-CHAT filamentElectron microscopy3.132024-03-06
388KBC|1|O(2-ACETYL-5-METHYLANILINO)(2,6-DIBROMOPHENYL)ACETAMIDEsynthetic constructStructure of CmTad1 complexed with cAAAX-ray diffraction2.832024-08-21
396YWO|1|IRNA (5'-R(*AP*AP*A)-3')synthetic constructCutA in complex with A3 RNAX-ray diffraction1.932020-08-05
408KBC|1|N(2-ACETYL-5-METHYLANILINO)(2,6-DIBROMOPHENYL)ACETAMIDEsynthetic constructStructure of CmTad1 complexed with cAAAX-ray diffraction2.832024-08-21
418KBC|1|Q(2-ACETYL-5-METHYLANILINO)(2,6-DIBROMOPHENYL)ACETAMIDEsynthetic constructStructure of CmTad1 complexed with cAAAX-ray diffraction2.832024-08-21
428KBC|1|P(2-ACETYL-5-METHYLANILINO)(2,6-DIBROMOPHENYL)ACETAMIDEsynthetic constructStructure of CmTad1 complexed with cAAAX-ray diffraction2.832024-08-21
438Z4I|1|Ccyclic tri-adenylatesynthetic constructcrystal structure of Cdn1 in complex with cA3X-ray diffraction2.832026-02-04
442A1R|1|C5'-R(*AP*AP*A)-3'Crystal structure of PARN nuclease domainX-ray diffraction2.632005-12-20
453GPQ|1|ERNA (5'-R(*AP*AP*A)-3')Crystal structure of macro domain of Chikungunya virus in complex with RNAX-ray diffraction222009-07-21
462A1R|1|D5'-R(*AP*AP*A)-3'Crystal structure of PARN nuclease domainX-ray diffraction2.632005-12-20
476M6V|1|FRNA (5'-R(P*AP*AP*A)-3')Escherichia coliCrystal structure the toxin-antitoxin MntA-HepTX-ray diffraction3.0832020-09-30
483GPQ|1|FRNA (5'-R(*AP*AP*A)-3')Crystal structure of macro domain of Chikungunya virus in complex with RNAX-ray diffraction222009-07-21
496M6V|1|ERNA (5'-R(P*AP*AP*A)-3')Escherichia coliCrystal structure the toxin-antitoxin MntA-HepTX-ray diffraction3.0832020-09-30
508TL0|1|NRNA (5'-R(*AP*AP*A)-3')synthetic constructStructure of activated SAVED-CHAT filamentElectron microscopy3.132024-03-06
516VM6|1|K2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3')synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-ray diffraction2.132020-06-17
526O79|1|Ccyclic RNA cA3synthetic constructCrystal structure of Csm1-Csm4 cassette in complex with cA3X-ray diffraction332019-07-31
536M6V|1|GRNA (5'-R(P*AP*AP*A)-3')Escherichia coliCrystal structure the toxin-antitoxin MntA-HepTX-ray diffraction3.0832020-09-30
546HYU|1|DRNA (5'-R(*A*AP*A)-3')synthetic constructCrystal structure of DHX8 helicase bound to single stranded poly-adenine RNAX-ray diffraction3.2232019-08-28
558ZWK|1|GRNA (5'-R(P*AP*AP*A)-3')Homo sapiensPolyadenylic acid bound alpha-synuclein fibril Polymorph 2Electron microscopy3.432024-07-03
568ZWK|1|QRNA (5'-R(P*AP*AP*A)-3')Homo sapiensPolyadenylic acid bound alpha-synuclein fibril Polymorph 2Electron microscopy3.432024-07-03
578ZWJ|1|FRNA (5'-R(P*AP*AP*A)-3')Homo sapiensPolyadenylic acid bound alpha-synuclein fibril Polymorph 1Electron microscopy3.132024-07-03
588ZWJ|1|QRNA (5'-R(P*AP*AP*A)-3')Homo sapiensPolyadenylic acid bound alpha-synuclein fibril Polymorph 1Electron microscopy3.132024-07-03
591LAJ|1|R5'-R(*AP*AP*A)-3'The Structure of Tomato Aspermy Virus by X-Ray CrystallographyX-ray diffraction3.432002-11-27

Release history

Release4.58
Date2026-09-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
18Z4I|1|Ccrystal structure of Cdn1 in complex with cA3X-RAY DIFFRACTION2.83
29ZWR|1|DCrystal structure of the N4BP2 polynucleotide kinase domain complexed with ATP or ADP, Mg, and the trinucleotide substrate AAA or its 5'-phosphorylated product pAAA.X-RAY DIFFRACTION2.33
36HYU|1|DCrystal structure of DHX8 helicase bound to single stranded poly-adenine RNAX-RAY DIFFRACTION3.223
49ZWR|1|ECrystal structure of the N4BP2 polynucleotide kinase domain complexed with ATP or ADP, Mg, and the trinucleotide substrate AAA or its 5'-phosphorylated product pAAA.X-RAY DIFFRACTION2.33
57SOQ|1|BLaM domain of human LARP1 in complex with AAA RNAX-RAY DIFFRACTION1.153
67SOR|1|BLaM domain of human LARP1 in complex with AAA RNAX-RAY DIFFRACTION1.353
77SOR|1|DLaM domain of human LARP1 in complex with AAA RNAX-RAY DIFFRACTION1.353
88KBC|1|NStructure of CmTad1 complexed with cAAAX-RAY DIFFRACTION2.83
98KBC|1|PStructure of CmTad1 complexed with cAAAX-RAY DIFFRACTION2.83
108KBF|1|DStructure of CbTad1 complexed with 1',3'-cADPR and cA3X-RAY DIFFRACTION2.313
118KBH|1|JStructure of CbTad1 complexed with 2',3'-cGAMP and cA3X-RAY DIFFRACTION1.543
128KBH|1|LStructure of CbTad1 complexed with 2',3'-cGAMP and cA3X-RAY DIFFRACTION1.543
138KBF|1|CStructure of CbTad1 complexed with 1',3'-cADPR and cA3X-RAY DIFFRACTION2.313
148KBH|1|KStructure of CbTad1 complexed with 2',3'-cGAMP and cA3X-RAY DIFFRACTION1.543
158KBC|1|QStructure of CmTad1 complexed with cAAAX-RAY DIFFRACTION2.83
168KBC|1|OStructure of CmTad1 complexed with cAAAX-RAY DIFFRACTION2.83
176P7P|1|DStructure of E. coli MS115-1 NucC, cAAA-bound formX-RAY DIFFRACTION1.663
186P7P|1|EStructure of E. coli MS115-1 NucC, cAAA-bound formX-RAY DIFFRACTION1.663
196P7P|1|FStructure of E. coli MS115-1 NucC, cAAA-bound formX-RAY DIFFRACTION1.663
206Q1H|1|DStructure of P. aeruginosa ATCC27853 NucC, cAAA-bound formX-RAY DIFFRACTION1.453
216Q1H|1|HStructure of P. aeruginosa ATCC27853 NucC, cAAA-bound formX-RAY DIFFRACTION1.453
227ZGV|1|DSerratia NucC bound to cA3X-RAY DIFFRACTION1.483
238TL0|1|HStructure of activated SAVED-CHAT filamentELECTRON MICROSCOPY3.13
248TL0|1|JStructure of activated SAVED-CHAT filamentELECTRON MICROSCOPY3.13
258TL0|1|FStructure of activated SAVED-CHAT filamentELECTRON MICROSCOPY3.13
268TL0|1|EStructure of activated SAVED-CHAT filamentELECTRON MICROSCOPY3.13
278TL0|1|NStructure of activated SAVED-CHAT filamentELECTRON MICROSCOPY3.13
288TL0|1|MStructure of activated SAVED-CHAT filamentELECTRON MICROSCOPY3.13
298TL0|1|GStructure of activated SAVED-CHAT filamentELECTRON MICROSCOPY3.13
306WAN|1|GStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.43
316VM6|1|JStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.13
326VM6|1|IStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.13
336VM6|1|GStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.13
346VM6|1|KStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.13
356VM6|1|HStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.13
369ZWR|1|FCrystal structure of the N4BP2 polynucleotide kinase domain complexed with ATP or ADP, Mg, and the trinucleotide substrate AAA or its 5'-phosphorylated product pAAA.X-RAY DIFFRACTION2.33
376WAN|1|KStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.43
386WAN|1|JStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.43
396WAN|1|IStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.43
406WAN|1|HStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.43
416WAN|1|LStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.43
426O79|1|CCrystal structure of Csm1-Csm4 cassette in complex with cA3X-RAY DIFFRACTION33
436M6V|1|GCrystal structure the toxin-antitoxin MntA-HepTX-RAY DIFFRACTION3.083
444OAU|1|AComplete human RNase L in complex with biological activators.X-RAY DIFFRACTION2.63
458ZWK|1|QPolyadenylic acid bound alpha-synuclein fibril Polymorph 2ELECTRON MICROSCOPY3.43
468ZWK|1|GPolyadenylic acid bound alpha-synuclein fibril Polymorph 2ELECTRON MICROSCOPY3.43
478ZWJ|1|FPolyadenylic acid bound alpha-synuclein fibril Polymorph 1ELECTRON MICROSCOPY3.13
488ZWJ|1|QPolyadenylic acid bound alpha-synuclein fibril Polymorph 1ELECTRON MICROSCOPY3.13
491LAJ|1|RThe Structure of Tomato Aspermy Virus by X-Ray CrystallographyX-RAY DIFFRACTION3.43
506M6V|1|ECrystal structure the toxin-antitoxin MntA-HepTX-RAY DIFFRACTION3.083
516M6V|1|FCrystal structure the toxin-antitoxin MntA-HepTX-RAY DIFFRACTION3.083
526YWO|1|ECutA in complex with A3 RNAX-RAY DIFFRACTION1.93
536YWO|1|ICutA in complex with A3 RNAX-RAY DIFFRACTION1.93
546YWO|1|FCutA in complex with A3 RNAX-RAY DIFFRACTION1.93
556YWO|1|KCutA in complex with A3 RNAX-RAY DIFFRACTION1.93
562A1R|1|DCrystal structure of PARN nuclease domainX-RAY DIFFRACTION2.63
572A1R|1|CCrystal structure of PARN nuclease domainX-RAY DIFFRACTION2.63
583GPQ|1|FCrystal structure of macro domain of Chikungunya virus in complex with RNAX-RAY DIFFRACTION22
593GPQ|1|ECrystal structure of macro domain of Chikungunya virus in complex with RNAX-RAY DIFFRACTION22

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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