Equivalence class NR_3.5_65223.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6Q1H|1|D (rep) | RNA (5'-R(P*AP*AP*A)-3') | Pseudomonas aeruginosa | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-ray diffraction | 1.45 | 3 | 2019-12-25 | |||
| 2 | 6Q1H|1|H | RNA (5'-R(P*AP*AP*A)-3') | Pseudomonas aeruginosa | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-ray diffraction | 1.45 | 3 | 2019-12-25 | |||
| 3 | 6P7P|1|F | Cyclic tri-AMP (5'-3' linked) | Escherichia coli | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-ray diffraction | 1.66 | 3 | 2019-12-25 | |||
| 4 | 6P7P|1|E | Cyclic tri-AMP (5'-3' linked) | Escherichia coli | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-ray diffraction | 1.66 | 3 | 2019-12-25 | |||
| 5 | 6P7P|1|D | Cyclic tri-AMP (5'-3' linked) | Escherichia coli | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-ray diffraction | 1.66 | 3 | 2019-12-25 | |||
| 6 | 6VM6|1|J | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 3 | 2020-06-17 | |||
| 7 | 6VM6|1|G | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 3 | 2020-06-17 | |||
| 8 | 6WAN|1|K | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 3 | 2020-06-17 | |||
| 9 | 6WAN|1|H | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 3 | 2020-06-17 | |||
| 10 | 6WAN|1|G | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 3 | 2020-06-17 | |||
| 11 | 6WAN|1|L | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 3 | 2020-06-17 | |||
| 12 | 6WAN|1|I | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 3 | 2020-06-17 | |||
| 13 | 6YWO|1|F | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 3 | 2020-08-05 | |||
| 14 | 6WAN|1|J | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 3 | 2020-06-17 | |||
| 15 | 4OAU|1|A | RNA (5'-R(P*A*AP*A)-2') | Complete human RNase L in complex with biological activators. | X-ray diffraction | 2.6 | 3 | 2014-03-12 | ||||
| 16 | 6YWO|1|E | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 3 | 2020-08-05 | |||
| 17 | 6YWO|1|K | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 3 | 2020-08-05 | |||
| 18 | 6VM6|1|I | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 3 | 2020-06-17 | |||
| 19 | 6VM6|1|H | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 3 | 2020-06-17 | |||
| 20 | 6YWO|1|I | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 3 | 2020-08-05 | |||
| 21 | 2A1R|1|C | 5'-R(*AP*AP*A)-3' | Crystal structure of PARN nuclease domain | X-ray diffraction | 2.6 | 3 | 2005-12-20 | ||||
| 22 | 6M6V|1|F | RNA (5'-R(P*AP*AP*A)-3') | Escherichia coli | Crystal structure the toxin-antitoxin MntA-HepT | X-ray diffraction | 3.08 | 3 | 2020-09-30 | |||
| 23 | 6M6V|1|E | RNA (5'-R(P*AP*AP*A)-3') | Escherichia coli | Crystal structure the toxin-antitoxin MntA-HepT | X-ray diffraction | 3.08 | 3 | 2020-09-30 | |||
| 24 | 2A1R|1|D | 5'-R(*AP*AP*A)-3' | Crystal structure of PARN nuclease domain | X-ray diffraction | 2.6 | 3 | 2005-12-20 | ||||
| 25 | 3GPQ|1|E | RNA (5'-R(*AP*AP*A)-3') | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-ray diffraction | 2 | 2 | 2009-07-21 | ||||
| 26 | 3GPQ|1|F | RNA (5'-R(*AP*AP*A)-3') | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-ray diffraction | 2 | 2 | 2009-07-21 | ||||
| 27 | 6O79|1|C | cyclic RNA cA3 | synthetic construct | Crystal structure of Csm1-Csm4 cassette in complex with cA3 | X-ray diffraction | 3 | 3 | 2019-07-31 | |||
| 28 | 6VM6|1|K | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 3 | 2020-06-17 | |||
| 29 | 6M6V|1|G | RNA (5'-R(P*AP*AP*A)-3') | Escherichia coli | Crystal structure the toxin-antitoxin MntA-HepT | X-ray diffraction | 3.08 | 3 | 2020-09-30 | |||
| 30 | 6HYU|1|D | RNA (5'-R(*A*AP*A)-3') | synthetic construct | Crystal structure of DHX8 helicase bound to single stranded poly-adenine RNA | X-ray diffraction | 3.22 | 3 | 2019-08-28 | |||
| 31 | 1LAJ|1|R | 5'-R(*AP*AP*A)-3' | The Structure of Tomato Aspermy Virus by X-Ray Crystallography | X-ray diffraction | 3.4 | 3 | 2002-11-27 |
Release history
| Release | 3.146 | 3.147 | 3.148 | 3.149 | 3.150 | 3.151 | 3.152 | 3.153 | 3.154 | 3.155 | 3.156 | 3.157 | 3.158 | 3.159 | 3.160 | 3.161 | 3.162 | 3.163 | 3.164 | 3.165 | 3.166 | 3.167 | 3.168 | 3.169 | 3.170 | 3.171 | 3.172 | 3.173 | 3.174 | 3.175 | 3.176 | 3.177 | 3.178 | 3.179 | 3.180 | 3.181 | 3.182 | 3.183 | 3.184 | 3.185 | 3.186 | 3.187 | 3.188 | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-09-30 | 2020-10-07 | 2020-10-14 | 2020-10-21 | 2020-10-28 | 2020-11-04 | 2020-11-11 | 2020-11-18 | 2020-11-25 | 2020-12-02 | 2020-12-09 | 2020-12-16 | 2020-12-23 | 2020-12-30 | 2021-01-06 | 2021-01-13 | 2021-01-20 | 2021-01-27 | 2021-02-03 | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 | 2021-03-10 | 2021-03-17 | 2021-03-24 | 2021-03-31 | 2021-04-07 | 2021-04-14 | 2021-04-21 | 2021-04-28 | 2021-05-05 | 2021-05-12 | 2021-05-19 | 2021-05-26 | 2021-06-02 | 2021-06-09 | 2021-06-16 | 2021-06-23 | 2021-06-30 | 2021-07-07 | 2021-07-14 | 2021-07-21 | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_65223.4 | NR_3.5_65223.3 | 3.146 | (28) 1LAJ|1|R, 2A1R|1|C, 2A1R|1|D, 3GPQ|1|E, 3GPQ|1|F, 4OAU|1|A, 6HYU|1|D, 6O79|1|C, 6P7P|1|D, 6P7P|1|E, 6P7P|1|F, 6Q1H|1|D, 6Q1H|1|H, 6VM6|1|G, 6VM6|1|H, 6VM6|1|I, 6VM6|1|J, 6VM6|1|K, 6WAN|1|G, 6WAN|1|H, 6WAN|1|I, 6WAN|1|J, 6WAN|1|K, 6WAN|1|L, 6YWO|1|E, 6YWO|1|F, 6YWO|1|I, 6YWO|1|K | (3) 6M6V|1|E, 6M6V|1|F, 6M6V|1|G | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_65223.4 | NR_3.5_65223.5 | 3.235 | (31) 1LAJ|1|R, 2A1R|1|C, 2A1R|1|D, 3GPQ|1|E, 3GPQ|1|F, 4OAU|1|A, 6HYU|1|D, 6M6V|1|E, 6M6V|1|F, 6M6V|1|G, 6O79|1|C, 6P7P|1|D, 6P7P|1|E, 6P7P|1|F, 6Q1H|1|D, 6Q1H|1|H, 6VM6|1|G, 6VM6|1|H, 6VM6|1|I, 6VM6|1|J, 6VM6|1|K, 6WAN|1|G, 6WAN|1|H, 6WAN|1|I, 6WAN|1|J, 6WAN|1|K, 6WAN|1|L, 6YWO|1|E, 6YWO|1|F, 6YWO|1|I, 6YWO|1|K | (0) | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 6HYU|1|D | Crystal structure of DHX8 helicase bound to single stranded poly-adenine RNA | X-RAY DIFFRACTION | 3.22 | 3 | |
| 2 | 6WAN|1|G | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 | |
| 3 | 6VM6|1|J | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 | |
| 4 | 6VM6|1|I | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 | |
| 5 | 6VM6|1|G | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 | |
| 6 | 6VM6|1|K | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 | |
| 7 | 6VM6|1|H | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 | |
| 8 | 6Q1H|1|D | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.45 | 3 | |
| 9 | 6Q1H|1|H | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.45 | 3 | |
| 10 | 6P7P|1|D | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.66 | 3 | |
| 11 | 6P7P|1|F | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.66 | 3 | |
| 12 | 6P7P|1|E | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.66 | 3 | |
| 13 | 6WAN|1|K | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 | |
| 14 | 6WAN|1|J | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 | |
| 15 | 6WAN|1|I | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 | |
| 16 | 6WAN|1|H | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 | |
| 17 | 6WAN|1|L | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 | |
| 18 | 6O79|1|C | Crystal structure of Csm1-Csm4 cassette in complex with cA3 | X-RAY DIFFRACTION | 3 | 3 | |
| 19 | 6M6V|1|G | Crystal structure the toxin-antitoxin MntA-HepT | X-RAY DIFFRACTION | 3.08 | 3 | |
| 20 | 4OAU|1|A | Complete human RNase L in complex with biological activators. | X-RAY DIFFRACTION | 2.6 | 3 | |
| 21 | 6M6V|1|E | Crystal structure the toxin-antitoxin MntA-HepT | X-RAY DIFFRACTION | 3.08 | 3 | |
| 22 | 6M6V|1|F | Crystal structure the toxin-antitoxin MntA-HepT | X-RAY DIFFRACTION | 3.08 | 3 | |
| 23 | 6YWO|1|K | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 | |
| 24 | 6YWO|1|E | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 | |
| 25 | 6YWO|1|I | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 | |
| 26 | 6YWO|1|F | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 | |
| 27 | 2A1R|1|C | Crystal structure of PARN nuclease domain | X-RAY DIFFRACTION | 2.6 | 3 | |
| 28 | 2A1R|1|D | Crystal structure of PARN nuclease domain | X-RAY DIFFRACTION | 2.6 | 3 | |
| 29 | 1LAJ|1|R | The Structure of Tomato Aspermy Virus by X-Ray Crystallography | X-RAY DIFFRACTION | 3.4 | 3 | |
| 30 | 3GPQ|1|E | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-RAY DIFFRACTION | 2 | 2 | |
| 31 | 3GPQ|1|F | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-RAY DIFFRACTION | 2 | 2 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: