Equivalence class NR_3.5_72202.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8A57|1|A (rep) | Large subunit ribosomal RNA | 23S ribosomal RNA | Listeria monocytogenes EGD-e | Bacteria | RF02541 | Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit. | Electron microscopy | 2.3 | 2022-11-02 |
| 2 | 8A5I|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Listeria monocytogenes EGD-e | Bacteria | RF02541 | Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit. | Electron microscopy | 2.3 | 2022-11-02 |
| 3 | 8UUA|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Listeria innocua | Bacteria | RF02541 | Cryo-EM structure of the Listeria innocua 50S ribosomal subunit in complex with HflXr (structure III) | Electron microscopy | 2.7 | 2024-02-28 |
| 4 | 7NHN|1|A | Large subunit ribosomal RNA | 23S rRNA | Listeria monocytogenes EGD-e | Bacteria | RF02541 | VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes | Electron microscopy | 2.9 | 2021-05-05 |
| 5 | 8UU4|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Listeria innocua | Bacteria | RF02541 | Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A) | Electron microscopy | 3 | 2024-02-28 |
| 6 | 8UU5|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Listeria innocua | Bacteria | RF02541 | Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B) | Electron microscopy | 3 | 2024-02-28 |
| 7 | 8UU8|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Listeria innocua | Bacteria | RF02541 | Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C) | Electron microscopy | 3.1 | 2024-02-28 |
| 8 | 8UU9|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Listeria innocua | Bacteria | RF02541 | Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D) | Electron microscopy | 3.1 | 2024-02-28 |
| 9 | 8A63|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Listeria monocytogenes EGD-e | Bacteria | RF02541 | Cryo-EM structure of Listeria monocytogenes 50S ribosomal subunit. | Electron microscopy | 3.1 | 2022-11-02 |
| 10 | 8UU7|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Listeria innocua | Bacteria | RF02541 | Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B) | Electron microscopy | 3.2 | 2024-02-28 |
| 11 | 8UU6|1|A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Listeria innocua | Bacteria | RF02541 | Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A) | Electron microscopy | 3.3 | 2024-02-28 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 8A57|1|A | Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit. | ELECTRON MICROSCOPY | 2.3 | 2908 | |
| 2 | 7NHN|1|A | VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes | ELECTRON MICROSCOPY | 2.9 | 2908 | |
| 3 | 8A5I|1|A | Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit. | ELECTRON MICROSCOPY | 2.3 | 2908 | |
| 4 | 8A63|1|A | Cryo-EM structure of Listeria monocytogenes 50S ribosomal subunit. | ELECTRON MICROSCOPY | 3.1 | 2908 | |
| 5 | 8UU6|1|A | Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A) | ELECTRON MICROSCOPY | 3.3 | 2904 | |
| 6 | 8UU9|1|A | Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D) | ELECTRON MICROSCOPY | 3.1 | 2899 | |
| 7 | 8UU8|1|A | Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C) | ELECTRON MICROSCOPY | 3.1 | 2901 | |
| 8 | 8UU5|1|A | Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B) | ELECTRON MICROSCOPY | 3 | 2902 | |
| 9 | 8UU4|1|A | Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A) | ELECTRON MICROSCOPY | 3 | 2903 | |
| 10 | 8UU7|1|A | Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B) | ELECTRON MICROSCOPY | 3.2 | 2909 | |
| 11 | 8UUA|1|A | Cryo-EM structure of the Listeria innocua 50S ribosomal subunit in complex with HflXr (structure III) | ELECTRON MICROSCOPY | 2.7 | 2894 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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