#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17QI4|1|B (rep)Transfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome at 2.2 A resolutionElectron microscopy2.21722022-07-13
28RRI|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with antibiotic tigecyclineElectron microscopy2.4722025-03-12
37PO4|1|BTransfer RNAtRNAValHomo sapiensMitochondriaRF00005Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)Electron microscopy2.56722022-06-15
46ZM6|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAElectron microscopy2.59722021-01-13
57QI5|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolutionElectron microscopy2.63722023-07-05
68ANY|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNAElectron microscopy2.85722023-08-16
76ZM5|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideElectron microscopy2.89722021-01-13
87ODR|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005State A of the human mitoribosomal large subunit assembly intermediateElectron microscopy2.9722021-06-23
98OIT|1|B9Transfer RNACP Val-tRNA(Val)Homo sapiensMitochondriaRF0000539S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNAElectron microscopy2.9722023-06-14
107QI6|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolutionElectron microscopy2.98722023-05-17
118QSJ|1|BTransfer RNAtRNA-ValHomo sapiensMitochondriaRF00005Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7Electron microscopy3722023-12-13
128PK0|1|BTransfer RNACP tRNA-ValHomo sapiensMitochondriaRF00005human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7Electron microscopy3.03722023-12-13
137OF0|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).Electron microscopy2.2562021-06-09
147ODT|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005State C of the human mitoribosomal large subunit assembly intermediateElectron microscopy3.1722021-06-23
157ODS|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005State B of the human mitoribosomal large subunit assembly intermediateElectron microscopy3.1722021-06-23
168OIR|1|B9Transfer RNACP Val-tRNA(Val)Homo sapiensMitochondriaRF0000555S human mitochondrial ribosome with mtRF1 and P-site tRNAElectron microscopy3.1722023-06-14
177O9M|1|BTransfer RNAMT-TRNAVALHomo sapiensMitochondriaRF00005Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU moduleElectron microscopy2.5602021-06-30
188QU5|1|BTransfer RNAmitochondrial tRNAValHomo sapiensEukaryaRF00005mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2Electron microscopy2.42562024-06-26
197OF7|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).Electron microscopy2.5562021-06-23
207OF6|1|BTransfer RNAMitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).Electron microscopy2.6562021-06-09
219CN3|1|BTransfer RNAtRNAHomo sapiensMitochondriaRF00005Human 39S mitoribosome in complex with antibiotic LinezolidElectron microscopy2.62562025-04-23
227OF2|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.Electron microscopy2.7562021-06-02
237OF3|1|BTransfer RNAMitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).Electron microscopy2.7562021-05-19
247OF4|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).Electron microscopy2.7562021-06-09
258QU1|1|BTransfer RNAmitochondrial tRNAValHomo sapiensEukaryaRF00005mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1Electron microscopy2.74562024-06-26
267O9K|1|BTransfer RNAMT-TRNAVALHomo sapiensMitochondriaRF00005Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-TuElectron microscopy3.1602021-06-30
278K2A|1|L2Transfer RNAVal tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 55S mitoribosome with TigecyclineElectron microscopy2.9562024-07-10
287OF5|1|BTransfer RNAMitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).Electron microscopy2.9562021-06-09
296VMI|1|BTransfer RNAtRNAvalHomo sapiensMitochondriaRF00005Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)Electron microscopy2.96562020-08-05
306VLZ|1|BTransfer RNAtRNAvalHomo sapiensMitochondriaRF00005Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)Electron microscopy2.97562020-08-05
317QH6|1|BTransfer RNAmitochondrial tRNAValHomo sapiensEukaryaRF00005Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1Electron microscopy3.08562022-03-02
328XT3|1|L2Transfer RNAVal tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 39S mitoribosome with 10uM TigecyclineElectron microscopy3.1562024-07-10
338XT1|1|L2Transfer RNAVal tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 39S mitoribosome with 5uM TigecyclineElectron microscopy3.1562024-07-10
347A5J|1|BTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAsElectron microscopy3.1562020-12-23
357OIC|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4Electron microscopy3.1562021-09-15
365OOL|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAElectron microscopy3.06562017-09-13
375OOM|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAElectron microscopy3.03562017-09-13
387L20|1|BTransfer RNAtRNAvalHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.Electron microscopy3.15562021-05-12
397OIA|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3CElectron microscopy3.2562021-09-15
408XT0|1|L2Transfer RNAVal tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 55S mitoribosome with 5um TigecyclineElectron microscopy3.2562024-07-10
417OIB|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3DElectron microscopy3.3562021-09-15
428XT2|1|L2Transfer RNAVal tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 55S mitoribosome with 10uM TigecyclineElectron microscopy3.3562024-07-10
437OI9|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3BElectron microscopy3.3562021-09-15
447A5H|1|BTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1Electron microscopy3.3562020-12-23
458K2B|1|L2Transfer RNAVal tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 39S mitoribosome with TigecyclineElectron microscopy3.4562024-07-10
466ZSC|1|XBTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with E-site tRNAElectron microscopy3.5592020-09-16
477L08|1|BTransfer RNAtRNAVALHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.Electron microscopy3.49562021-05-12
487OI8|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3AElectron microscopy3.5562021-09-15
497OIE|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5BElectron microscopy3.5562021-09-15
507OI7|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2Electron microscopy3.5562021-09-15
513J7Y|1|BTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Structure of the large ribosomal subunit from human mitochondriaElectron microscopy3.4572014-10-15
523J9M|1|BTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Structure of the human mitochondrial ribosome (class 1)Electron microscopy3.5562015-04-15

Release history

Release3.3843.3853.3863.3873.3883.3893.3903.3913.392
Date2025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-042025-06-112025-06-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17QH6|1|BCryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1ELECTRON MICROSCOPY3.0856
27OIC|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4ELECTRON MICROSCOPY3.156
33J7Y|1|BStructure of the large ribosomal subunit from human mitochondriaELECTRON MICROSCOPY3.457
43J9M|1|BStructure of the human mitochondrial ribosome (class 1)ELECTRON MICROSCOPY3.556
57A5H|1|BStructure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1ELECTRON MICROSCOPY3.356
67A5J|1|BStructure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAsELECTRON MICROSCOPY3.156
77OI8|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3AELECTRON MICROSCOPY3.556
87OIE|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5BELECTRON MICROSCOPY3.556
97OIB|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3DELECTRON MICROSCOPY3.356
107OI9|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3BELECTRON MICROSCOPY3.356
117OI7|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2ELECTRON MICROSCOPY3.556
127OIA|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3CELECTRON MICROSCOPY3.256
138QU1|1|Bmt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1ELECTRON MICROSCOPY2.7456
148QU5|1|Bmt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2ELECTRON MICROSCOPY2.4256
155OOM|1|BStructure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAELECTRON MICROSCOPY3.0356
165OOL|1|BStructure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAELECTRON MICROSCOPY3.0656
177OF7|1|BStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).ELECTRON MICROSCOPY2.556
187OF0|1|BStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).ELECTRON MICROSCOPY2.256
197OF3|1|BStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).ELECTRON MICROSCOPY2.756
207OF4|1|BStructure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).ELECTRON MICROSCOPY2.756
217OF6|1|BStructure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).ELECTRON MICROSCOPY2.656
227OF2|1|BStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.ELECTRON MICROSCOPY2.756
237OF5|1|BStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).ELECTRON MICROSCOPY2.956
248XT3|1|L2Cryo-EM structure of the human 39S mitoribosome with 10uM TigecyclineELECTRON MICROSCOPY3.156
258XT1|1|L2Cryo-EM structure of the human 39S mitoribosome with 5uM TigecyclineELECTRON MICROSCOPY3.156
268K2B|1|L2Cryo-EM structure of the human 39S mitoribosome with TigecyclineELECTRON MICROSCOPY3.456
278K2A|1|L2Cryo-EM structure of the human 55S mitoribosome with TigecyclineELECTRON MICROSCOPY2.956
288XT2|1|L2Cryo-EM structure of the human 55S mitoribosome with 10uM TigecyclineELECTRON MICROSCOPY3.356
298XT0|1|L2Cryo-EM structure of the human 55S mitoribosome with 5um TigecyclineELECTRON MICROSCOPY3.256
309CN3|1|BHuman 39S mitoribosome in complex with antibiotic LinezolidELECTRON MICROSCOPY2.6256
317L20|1|BCryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.ELECTRON MICROSCOPY3.1556
327L08|1|BCryo-EM structure of the human 55S mitoribosome-RRFmt complex.ELECTRON MICROSCOPY3.4956
336VLZ|1|BStructure of the human mitochondrial ribosome-EF-G1 complex (ClassI)ELECTRON MICROSCOPY2.9756
346VMI|1|BStructure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)ELECTRON MICROSCOPY2.9656
357O9M|1|BHuman mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU moduleELECTRON MICROSCOPY2.560
366ZSC|1|XBHuman mitochondrial ribosome in complex with E-site tRNAELECTRON MICROSCOPY3.559
378ANY|1|BHuman mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNAELECTRON MICROSCOPY2.8572
387QI5|1|BHuman mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolutionELECTRON MICROSCOPY2.6372
397QI4|1|BHuman mitochondrial ribosome at 2.2 A resolutionELECTRON MICROSCOPY2.2172
407QI6|1|BHuman mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolutionELECTRON MICROSCOPY2.9872
418OIR|1|B955S human mitochondrial ribosome with mtRF1 and P-site tRNAELECTRON MICROSCOPY3.172
428OIT|1|B939S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNAELECTRON MICROSCOPY2.972
438RRI|1|BHuman mitochondrial ribosome in complex with antibiotic tigecyclineELECTRON MICROSCOPY2.472
448QSJ|1|BHuman mitoribosomal large subunit assembly intermediate 2 with GTPBP7ELECTRON MICROSCOPY372
458PK0|1|Bhuman mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7ELECTRON MICROSCOPY3.0372
467ODR|1|BState A of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY2.972
477ODS|1|BState B of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY3.172
486ZM6|1|BHuman mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAELECTRON MICROSCOPY2.5972
496ZM5|1|BHuman mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideELECTRON MICROSCOPY2.8972
507ODT|1|BState C of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY3.172
517PO4|1|BAssembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)ELECTRON MICROSCOPY2.5672
527O9K|1|BHuman mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-TuELECTRON MICROSCOPY3.160

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 5.1986 s