RNA 3D Hub //

Equivalence class NR_3.5_74023.15 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18P2G|1|a (rep)Small subunit ribosomal RNA16S ribosomal RNA, mRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric stateElectron microscopy2.0215342024-05-01
29GHG|1|aSmall subunit ribosomal RNA23S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)Electron microscopy2.2215262025-03-26
36S0X|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.Electron microscopy2.4215392019-08-21
48P2F|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational stateElectron microscopy2.4415262024-05-01
58P2H|1|aSmall subunit ribosomal RNA16S ribosomal RNA, mRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric stateElectron microscopy2.4915342024-05-01
69GHH|1|aSmall subunit ribosomal RNA16S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)Electron microscopy2.715262025-03-26
78Y38|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.Electron microscopy2.5814792024-07-24
85NGM|1|AaSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF001772.9S structure of the 70S ribosome composing the S. aureus 100S complexElectron microscopy2.915392017-10-04
98BYV|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177Cryo-EM structure of a Staphylococus aureus 30S-RbfA complexElectron microscopy2.8915332023-12-27
107P48|1|aSmall subunit ribosomal RNA16S rRNAStaphylococcus aureusBacteriaRF00177Staphylococcus aureus ribosome in complex with Sal(B)Electron microscopy2.914792022-02-02
117ASP|1|XSmall subunit ribosomal RNA16S rRNAStaphylococcus aureusBacteriaRF00177Staphylococcus aureus 70S after 50 minutes incubation at 37CElectron microscopy2.8614472021-11-17
127NHL|1|aSmall subunit ribosomal RNA16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*AP*UP*G)-3')Staphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusElectron microscopy3.115382021-05-05
137NHM|1|aSmall subunit ribosomal RNA16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*NP*NP*NP*NP*NP*NP*AP*UP*G)-3')Staphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0017770S ribosome from Staphylococcus aureusElectron microscopy3.115312021-05-05
146YEF|1|aSmall subunit ribosomal RNA16S rRNA, mRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0017770S initiation complex with assigned rRNA modifications from Staphylococcus aureusElectron microscopy3.215452021-01-27
157ASO|1|XSmall subunit ribosomal RNA16SStaphylococcus aureusBacteriaRF00177Staphylococcus aureus 70S after 30 minutes incubation at 37CElectron microscopy3.1114152021-11-17
167BGD|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)Electron microscopy3.210962021-12-08

Release history

Release3.3803.3813.3823.3833.3843.3853.3863.3873.3883.389
Date2025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-28

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17ASP|1|XStaphylococcus aureus 70S after 50 minutes incubation at 37CELECTRON MICROSCOPY2.861447
27ASO|1|XStaphylococcus aureus 70S after 30 minutes incubation at 37CELECTRON MICROSCOPY3.111415
36YEF|1|a70S initiation complex with assigned rRNA modifications from Staphylococcus aureusELECTRON MICROSCOPY3.21545
48P2F|1|aStaphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational stateELECTRON MICROSCOPY2.441526
59GHG|1|aStaphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)ELECTRON MICROSCOPY2.221526
69GHH|1|aStaphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)ELECTRON MICROSCOPY2.71526
77NHM|1|a70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.11531
87NHL|1|aVgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.11538
98Y38|1|aCryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.ELECTRON MICROSCOPY2.581479
107P48|1|aStaphylococcus aureus ribosome in complex with Sal(B)ELECTRON MICROSCOPY2.91479
115NGM|1|Aa2.9S structure of the 70S ribosome composing the S. aureus 100S complexELECTRON MICROSCOPY2.91539
126S0X|1|aErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.421539
138BYV|1|aCryo-EM structure of a Staphylococus aureus 30S-RbfA complexELECTRON MICROSCOPY2.891533
147BGD|1|aStaphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)ELECTRON MICROSCOPY3.21096
158P2H|1|aStaphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric stateELECTRON MICROSCOPY2.491534
168P2G|1|aStaphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric stateELECTRON MICROSCOPY2.021534

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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