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Equivalence class NR_3.5_75220.2 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17ECK|1|I+ 7ECK|1|J (rep)DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')synthetic constructRNA duplex containing C-Ag-A and U-Ag-A base pairsX-ray diffraction2.79242022-03-16
27ECK|1|G+ 7ECK|1|HDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')synthetic constructRNA duplex containing C-Ag-A and U-Ag-A base pairsX-ray diffraction2.79242022-03-16
37ECJ|1|A+ 7ECJ|1|BDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')synthetic constructRNA duplex containing C-A base pairsX-ray diffraction3.1242022-03-16
47ECK|1|E+ 7ECK|1|FDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')synthetic constructRNA duplex containing C-Ag-A and U-Ag-A base pairsX-ray diffraction2.79242022-03-16
57ECK|1|A+ 7ECK|1|BDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')synthetic constructRNA duplex containing C-Ag-A and U-Ag-A base pairsX-ray diffraction2.79242022-03-16
67ECL|1|E+ 7ECL|1|FDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')synthetic constructRNA duplex containing C-Ag-A and U-Ag-A base pairX-ray diffraction3.01242022-03-16
77ECL|1|I+ 7ECL|1|JDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')synthetic constructRNA duplex containing C-Ag-A and U-Ag-A base pairX-ray diffraction3.01242022-03-16
87ECL|1|K+ 7ECL|1|LDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')synthetic constructRNA duplex containing C-Ag-A and U-Ag-A base pairX-ray diffraction3.01242022-03-16
97ECL|1|G+ 7ECL|1|HDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')synthetic constructRNA duplex containing C-Ag-A and U-Ag-A base pairX-ray diffraction3.01242022-03-16
107ECL|1|A+ 7ECL|1|BDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')synthetic constructRNA duplex containing C-Ag-A and U-Ag-A base pairX-ray diffraction3.01242022-03-16
117ECK|1|K+ 7ECK|1|LDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')synthetic constructRNA duplex containing C-Ag-A and U-Ag-A base pairsX-ray diffraction2.79242022-03-16
127ECL|1|C+ 7ECL|1|DDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')synthetic constructRNA duplex containing C-Ag-A and U-Ag-A base pairX-ray diffraction3.01242022-03-16
137ECK|1|C+ 7ECK|1|DDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')synthetic constructRNA duplex containing C-Ag-A and U-Ag-A base pairsX-ray diffraction2.79242022-03-16
147ECJ|1|CDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')synthetic constructRNA duplex containing C-A base pairsX-ray diffraction3.1122022-03-16

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.3893.3903.391
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-042025-06-11

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17ECL|1|A+ 7ECL|1|BRNA duplex containing C-Ag-A and U-Ag-A base pairX-RAY DIFFRACTION3.0124
27ECK|1|A+ 7ECK|1|BRNA duplex containing C-Ag-A and U-Ag-A base pairsX-RAY DIFFRACTION2.7924
37ECJ|1|A+ 7ECJ|1|BRNA duplex containing C-A base pairsX-RAY DIFFRACTION3.124
47ECL|1|I+ 7ECL|1|JRNA duplex containing C-Ag-A and U-Ag-A base pairX-RAY DIFFRACTION3.0124
57ECK|1|I+ 7ECK|1|JRNA duplex containing C-Ag-A and U-Ag-A base pairsX-RAY DIFFRACTION2.7924
67ECK|1|E+ 7ECK|1|FRNA duplex containing C-Ag-A and U-Ag-A base pairsX-RAY DIFFRACTION2.7924
77ECL|1|E+ 7ECL|1|FRNA duplex containing C-Ag-A and U-Ag-A base pairX-RAY DIFFRACTION3.0124
87ECL|1|C+ 7ECL|1|DRNA duplex containing C-Ag-A and U-Ag-A base pairX-RAY DIFFRACTION3.0124
97ECK|1|C+ 7ECK|1|DRNA duplex containing C-Ag-A and U-Ag-A base pairsX-RAY DIFFRACTION2.7924
107ECL|1|K+ 7ECL|1|LRNA duplex containing C-Ag-A and U-Ag-A base pairX-RAY DIFFRACTION3.0124
117ECK|1|K+ 7ECK|1|LRNA duplex containing C-Ag-A and U-Ag-A base pairsX-RAY DIFFRACTION2.7924
127ECK|1|G+ 7ECK|1|HRNA duplex containing C-Ag-A and U-Ag-A base pairsX-RAY DIFFRACTION2.7924
137ECL|1|G+ 7ECL|1|HRNA duplex containing C-Ag-A and U-Ag-A base pairX-RAY DIFFRACTION3.0124
147ECJ|1|CRNA duplex containing C-A base pairsX-RAY DIFFRACTION3.112

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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