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Equivalence class NR_3.5_76081.1 Current

Showing 1 to 6 of 6 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18K0P|1|A+ 8K0P|1|C (rep)Group II catalytic intron + Group II catalytic intronRNA (542-MER)Anoxybacillus pushchinoensisBacteriaRF00029 + RF00029The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric apo stateElectron microscopy2.9910842024-05-15
28K0S|1|A+ 8K0S|1|CGroup II catalytic intron + Group II catalytic intronRNA (543-MER)Anoxybacillus pushchinoensisBacteriaRF00029 + RF00029The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 with 10-nt TRS at symmetric apo stateElectron microscopy3.4110862024-05-01
38K0R|1|AGroup II catalytic intronRNA (542-MER)Anoxybacillus pushchinoensisBacteriaRF00029The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric post cleavge stateElectron microscopy2.655422024-05-15
48K0R|1|CGroup II catalytic intronRNA (542-MER)Anoxybacillus pushchinoensisBacteriaRF00029The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric post cleavge stateElectron microscopy2.655422024-05-15
58K0Q|1|AGroup II catalytic intronRNA (542-MER)Anoxybacillus pushchinoensisBacteriaRF00029The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric pre-cleavage stateElectron microscopy3.145422024-05-15
68K0Q|1|CGroup II catalytic intronRNA (542-MER)Anoxybacillus pushchinoensisBacteriaRF00029The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric pre-cleavage stateElectron microscopy3.145422024-05-15

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.3893.3903.3913.392
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-042025-06-112025-06-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 6 of 6 entries
#SViewPDBTitleMethodResolution#NTs
18K0R|1|CThe Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric post cleavge stateELECTRON MICROSCOPY2.65542
28K0R|1|AThe Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric post cleavge stateELECTRON MICROSCOPY2.65542
38K0Q|1|CThe Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric pre-cleavage stateELECTRON MICROSCOPY3.14542
48K0Q|1|AThe Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric pre-cleavage stateELECTRON MICROSCOPY3.14542
58K0P|1|A+ 8K0P|1|CThe Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric apo stateELECTRON MICROSCOPY2.991084
68K0S|1|A+ 8K0S|1|CThe Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 with 10-nt TRS at symmetric apo stateELECTRON MICROSCOPY3.411086

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

8K0R|1|C:8K0R|1|C = 08K0R|1|C:8K0R|1|A = 0.00008K0R|1|C:8K0Q|1|C = 0.03418K0R|1|C:8K0Q|1|A = 0.03418K0R|1|C:8K0P|1|A+8K0P|1|C = 0.03368K0R|1|C:8K0S|1|A+8K0S|1|C = 0.05378K0R|1|A:8K0R|1|C = 0.00008K0R|1|A:8K0R|1|A = 08K0R|1|A:8K0Q|1|C = 0.03418K0R|1|A:8K0Q|1|A = 0.03418K0R|1|A:8K0P|1|A+8K0P|1|C = 0.03368K0R|1|A:8K0S|1|A+8K0S|1|C = 0.05378K0Q|1|C:8K0R|1|C = 0.03418K0Q|1|C:8K0R|1|A = 0.03418K0Q|1|C:8K0Q|1|C = 08K0Q|1|C:8K0Q|1|A = 0.00008K0Q|1|C:8K0P|1|A+8K0P|1|C = 0.00668K0Q|1|C:8K0S|1|A+8K0S|1|C = 0.04148K0Q|1|A:8K0R|1|C = 0.03418K0Q|1|A:8K0R|1|A = 0.03418K0Q|1|A:8K0Q|1|C = 0.00008K0Q|1|A:8K0Q|1|A = 08K0Q|1|A:8K0P|1|A+8K0P|1|C = 0.00668K0Q|1|A:8K0S|1|A+8K0S|1|C = 0.04148K0P|1|A+8K0P|1|C:8K0R|1|C = 0.03368K0P|1|A+8K0P|1|C:8K0R|1|A = 0.03368K0P|1|A+8K0P|1|C:8K0Q|1|C = 0.00668K0P|1|A+8K0P|1|C:8K0Q|1|A = 0.00668K0P|1|A+8K0P|1|C:8K0P|1|A+8K0P|1|C = 08K0P|1|A+8K0P|1|C:8K0S|1|A+8K0S|1|C = 0.04098K0S|1|A+8K0S|1|C:8K0R|1|C = 0.05378K0S|1|A+8K0S|1|C:8K0R|1|A = 0.05378K0S|1|A+8K0S|1|C:8K0Q|1|C = 0.04148K0S|1|A+8K0S|1|C:8K0Q|1|A = 0.04148K0S|1|A+8K0S|1|C:8K0P|1|A+8K0P|1|C = 0.04098K0S|1|A+8K0S|1|C:8K0S|1|A+8K0S|1|C = 08K0R|1|C8K0R|1|A8K0Q|1|C8K0Q|1|A8K0P|1|A+8K0P|1|C8K0S|1|A+8K0S|1|CDiscrepancy0.000.010.020.030.040.05

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