RNA 3D Hub //

Equivalence class NR_3.5_76490.1 Current

Showing 1 to 10 of 10 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19AZC|1|Pt (rep)Transfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human 80S ribosome (Consensus map)Electron microscopy2.19742025-04-30
29B0O|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human Post-eEF1A-A/T-P-Z state 80S ribosomeElectron microscopy2.83762025-04-30
39AZS|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human Post-eEF1A-AT-P-E state 80S ribosomeElectron microscopy2.8742025-04-30
49B0N|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human Post-eEF1A-AT-P state 80S ribosomeElectron microscopy2.92762025-04-30
59B0W|1|APTransfer RNAA/P site tRNAHomo sapiensEukaryaRF00005In situ human eEF2-A/P-P/E state 80S ribosomeElectron microscopy2.66712025-04-30
69AZN|1|APTransfer RNAA/P site tRNAHomo sapiensEukaryaRF00005In situ human A/P-P/E state 80S ribosomeElectron microscopy2.98712025-04-30
78UIY|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human P-Z state 80S ribosomeElectron microscopy3.44762025-04-09
89B0Q|1|APTransfer RNAA/P site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ human top-back di-ribosome structure (Composite map)Electron microscopy3.2712025-03-19
99B0Q|1|aPTransfer RNAA/P site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ human top-back di-ribosome structure (Composite map)Electron microscopy3.2712025-03-19
108UIZ|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human P-E state 80S ribosomeElectron microscopy3.43742025-04-09

Release history

Release3.3853.3863.3873.3883.3893.3903.3913.392
Date2025-04-302025-05-072025-05-142025-05-212025-05-282025-06-042025-06-112025-06-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 10 of 10 entries
#SViewPDBTitleMethodResolution#NTs
18UIY|1|PtIn situ human P-Z state 80S ribosomeELECTRON MICROSCOPY3.4476
29B0N|1|PtIn situ human Post-eEF1A-AT-P state 80S ribosomeELECTRON MICROSCOPY2.9276
39B0O|1|PtIn situ human Post-eEF1A-A/T-P-Z state 80S ribosomeELECTRON MICROSCOPY2.8376
49AZC|1|PtIn situ human 80S ribosome (Consensus map)ELECTRON MICROSCOPY2.1974
58UIZ|1|PtIn situ human P-E state 80S ribosomeELECTRON MICROSCOPY3.4374
69AZS|1|PtIn situ human Post-eEF1A-AT-P-E state 80S ribosomeELECTRON MICROSCOPY2.874
79AZN|1|APIn situ human A/P-P/E state 80S ribosomeELECTRON MICROSCOPY2.9871
89B0W|1|APIn situ human eEF2-A/P-P/E state 80S ribosomeELECTRON MICROSCOPY2.6671
99B0Q|1|APIn situ human top-back di-ribosome structure (Composite map)ELECTRON MICROSCOPY3.271
109B0Q|1|aPIn situ human top-back di-ribosome structure (Composite map)ELECTRON MICROSCOPY3.271

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

8UIY|1|Pt:8UIY|1|Pt = 08UIY|1|Pt:9B0N|1|Pt = 0.04488UIY|1|Pt:9B0O|1|Pt = 0.04338UIY|1|Pt:9AZC|1|Pt = 0.04528UIY|1|Pt:8UIZ|1|Pt = 0.04678UIY|1|Pt:9AZS|1|Pt = 0.04158UIY|1|Pt:9AZN|1|AP not available8UIY|1|Pt:9B0W|1|AP not available8UIY|1|Pt:9B0Q|1|AP not available8UIY|1|Pt:9B0Q|1|aP not available9B0N|1|Pt:8UIY|1|Pt = 0.04489B0N|1|Pt:9B0N|1|Pt = 09B0N|1|Pt:9B0O|1|Pt = 0.02319B0N|1|Pt:9AZC|1|Pt = 0.04339B0N|1|Pt:8UIZ|1|Pt = 0.04789B0N|1|Pt:9AZS|1|Pt = 0.04109B0N|1|Pt:9AZN|1|AP not available9B0N|1|Pt:9B0W|1|AP not available9B0N|1|Pt:9B0Q|1|AP not available9B0N|1|Pt:9B0Q|1|aP not available9B0O|1|Pt:8UIY|1|Pt = 0.04339B0O|1|Pt:9B0N|1|Pt = 0.02319B0O|1|Pt:9B0O|1|Pt = 09B0O|1|Pt:9AZC|1|Pt = 0.04049B0O|1|Pt:8UIZ|1|Pt = 0.04459B0O|1|Pt:9AZS|1|Pt = 0.03939B0O|1|Pt:9AZN|1|AP not available9B0O|1|Pt:9B0W|1|AP not available9B0O|1|Pt:9B0Q|1|AP not available9B0O|1|Pt:9B0Q|1|aP not available9AZC|1|Pt:8UIY|1|Pt = 0.04529AZC|1|Pt:9B0N|1|Pt = 0.04339AZC|1|Pt:9B0O|1|Pt = 0.04049AZC|1|Pt:9AZC|1|Pt = 09AZC|1|Pt:8UIZ|1|Pt = 0.02969AZC|1|Pt:9AZS|1|Pt = 0.02979AZC|1|Pt:9AZN|1|AP = 0.21199AZC|1|Pt:9B0W|1|AP = 0.21419AZC|1|Pt:9B0Q|1|AP not available9AZC|1|Pt:9B0Q|1|aP not available8UIZ|1|Pt:8UIY|1|Pt = 0.04678UIZ|1|Pt:9B0N|1|Pt = 0.04788UIZ|1|Pt:9B0O|1|Pt = 0.04458UIZ|1|Pt:9AZC|1|Pt = 0.02968UIZ|1|Pt:8UIZ|1|Pt = 08UIZ|1|Pt:9AZS|1|Pt = 0.03028UIZ|1|Pt:9AZN|1|AP not available8UIZ|1|Pt:9B0W|1|AP not available8UIZ|1|Pt:9B0Q|1|AP not available8UIZ|1|Pt:9B0Q|1|aP not available9AZS|1|Pt:8UIY|1|Pt = 0.04159AZS|1|Pt:9B0N|1|Pt = 0.04109AZS|1|Pt:9B0O|1|Pt = 0.03939AZS|1|Pt:9AZC|1|Pt = 0.02979AZS|1|Pt:8UIZ|1|Pt = 0.03029AZS|1|Pt:9AZS|1|Pt = 09AZS|1|Pt:9AZN|1|AP = 0.20799AZS|1|Pt:9B0W|1|AP = 0.20989AZS|1|Pt:9B0Q|1|AP not available9AZS|1|Pt:9B0Q|1|aP not available9AZN|1|AP:8UIY|1|Pt not available9AZN|1|AP:9B0N|1|Pt not available9AZN|1|AP:9B0O|1|Pt not available9AZN|1|AP:9AZC|1|Pt = 0.21199AZN|1|AP:8UIZ|1|Pt not available9AZN|1|AP:9AZS|1|Pt = 0.20799AZN|1|AP:9AZN|1|AP = 09AZN|1|AP:9B0W|1|AP = 0.03469AZN|1|AP:9B0Q|1|AP = 0.07479AZN|1|AP:9B0Q|1|aP = 0.08609B0W|1|AP:8UIY|1|Pt not available9B0W|1|AP:9B0N|1|Pt not available9B0W|1|AP:9B0O|1|Pt not available9B0W|1|AP:9AZC|1|Pt = 0.21419B0W|1|AP:8UIZ|1|Pt not available9B0W|1|AP:9AZS|1|Pt = 0.20989B0W|1|AP:9AZN|1|AP = 0.03469B0W|1|AP:9B0W|1|AP = 09B0W|1|AP:9B0Q|1|AP = 0.07449B0W|1|AP:9B0Q|1|aP = 0.08869B0Q|1|AP:8UIY|1|Pt not available9B0Q|1|AP:9B0N|1|Pt not available9B0Q|1|AP:9B0O|1|Pt not available9B0Q|1|AP:9AZC|1|Pt not available9B0Q|1|AP:8UIZ|1|Pt not available9B0Q|1|AP:9AZS|1|Pt not available9B0Q|1|AP:9AZN|1|AP = 0.07479B0Q|1|AP:9B0W|1|AP = 0.07449B0Q|1|AP:9B0Q|1|AP = 09B0Q|1|AP:9B0Q|1|aP = 0.05759B0Q|1|aP:8UIY|1|Pt not available9B0Q|1|aP:9B0N|1|Pt not available9B0Q|1|aP:9B0O|1|Pt not available9B0Q|1|aP:9AZC|1|Pt not available9B0Q|1|aP:8UIZ|1|Pt not available9B0Q|1|aP:9AZS|1|Pt not available9B0Q|1|aP:9AZN|1|AP = 0.08609B0Q|1|aP:9B0W|1|AP = 0.08869B0Q|1|aP:9B0Q|1|AP = 0.05759B0Q|1|aP:9B0Q|1|aP = 08UIY|1|Pt9B0N|1|Pt9B0O|1|Pt9AZC|1|Pt8UIZ|1|Pt9AZS|1|Pt9AZN|1|AP9B0W|1|AP9B0Q|1|AP9B0Q|1|aPDiscrepancy0.000.050.100.150.20

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