RNA 3D Hub //

Equivalence class NR_3.5_79777.3 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17XJG|1|H+ 7XJG|1|I (rep)RNA (14-MER), RNA (81-MER)Escherichia coliCryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.5 angstromElectron microscopy2.51582022-09-14
28QBL|1|bRetron-Eco1-A2, Retron-Eco1-msrEscherichia coli BL21(DE3)Retron-Eco1 filament with inactive effector (E106A, 2 segments)Electron microscopy2.66612024-06-05
37XJG|1|E+ 7XJG|1|FRNA (14-MER), RNA (81-MER)Escherichia coliCryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.5 angstromElectron microscopy2.51582022-09-14
49JM0|1|H+ 9JM0|1|GDNA (85-MER), RNA (82-MER)Escherichia coliretron Ec86-effector fiberElectron microscopy2.7972024-12-18
59JM0|1|R+ 9JM0|1|QDNA (85-MER), RNA (82-MER)Escherichia coliretron Ec86-effector fiberElectron microscopy2.7972024-12-18
68QBL|1|CRetron-Eco1-A2, Retron-Eco1-msrEscherichia coli BL21(DE3)Retron-Eco1 filament with inactive effector (E106A, 2 segments)Electron microscopy2.66612024-06-05
79JM0|1|NRNA (82-MER)Escherichia coliretron Ec86-effector fiberElectron microscopy2.7582024-12-18
88QBL|1|RRetron-Eco1-A2, Retron-Eco1-msrEscherichia coli BL21(DE3)Retron-Eco1 filament with inactive effector (E106A, 2 segments)Electron microscopy2.66612024-06-05
98QBL|1|MRetron-Eco1-A2, Retron-Eco1-msrEscherichia coli BL21(DE3)Retron-Eco1 filament with inactive effector (E106A, 2 segments)Electron microscopy2.66582024-06-05
108QBL|1|WRetron-Eco1-A2, Retron-Eco1-msrEscherichia coli BL21(DE3)Retron-Eco1 filament with inactive effector (E106A, 2 segments)Electron microscopy2.66612024-06-05
117V9X|1|H+ 7V9X|1|IRNA (14-MER), RNA (81-MER)Escherichia coliCryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.8 angstromElectron microscopy2.82582022-08-31
129JM0|1|ERNA (82-MER)Escherichia coliretron Ec86-effector fiberElectron microscopy2.7582024-12-18
137V9X|1|E+ 7V9X|1|FRNA (14-MER), RNA (81-MER)Escherichia coliCryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.8 angstromElectron microscopy2.82582022-08-31
148QBM|1|bRetron-Eco1-A2, Retron-Eco1-msrEscherichia coli BL21(DE3)Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)Electron microscopy3.09612024-06-05
158QBK|1|WRetron-Eco1-A2, Retron-Eco1-msrEscherichia coli BL21(DE3)Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment)Electron microscopy2.99612024-06-05
167V9U|1|E+ 7V9U|1|FRNA (5'-R(P*CP*GP*UP*AP*AP*GP*GP*G)-3'), RNA (81-MER)Escherichia coliCryo-EM structure of E.coli retron-Ec86 (RT-msDNA-RNA) at 3.2 angstromElectron microscopy3.12572022-08-31
178QBL|1|ORetron-Eco1-A2, Retron-Eco1-msrEscherichia coli BL21(DE3)Retron-Eco1 filament with inactive effector (E106A, 2 segments)Electron microscopy2.66612024-06-05
188QBM|1|MRetron-Eco1-A2, Retron-Eco1-msrEscherichia coli BL21(DE3)Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)Electron microscopy3.09612024-06-05
198QBM|1|WRetron-Eco1-A2, Retron-Eco1-msrEscherichia coli BL21(DE3)Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)Electron microscopy3.09612024-06-05
207V9U|1|G+ 7V9U|1|HRNA (5'-R(P*CP*GP*UP*AP*AP*GP*GP*G)-3'), RNA (81-MER)Escherichia coliCryo-EM structure of E.coli retron-Ec86 (RT-msDNA-RNA) at 3.2 angstromElectron microscopy3.12582022-08-31
218QBK|1|CRetron-Eco1-A2, Retron-Eco1-msrEscherichia coli BL21(DE3)Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment)Electron microscopy2.99612024-06-05
228QBK|1|MRetron-Eco1-A2, Retron-Eco1-msrEscherichia coli BL21(DE3)Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment)Electron microscopy2.99612024-06-05
238QBK|1|RRetron-Eco1-A2, Retron-Eco1-msrEscherichia coli BL21(DE3)Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment)Electron microscopy2.99612024-06-05
248QBM|1|RRetron-Eco1-A2, Retron-Eco1-msrEscherichia coli BL21(DE3)Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)Electron microscopy3.09612024-06-05
258QBM|1|ORetron-Eco1-A2, Retron-Eco1-msrEscherichia coli BL21(DE3)Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)Electron microscopy3.09612024-06-05
268QBM|1|CRetron-Eco1-A2, Retron-Eco1-msrEscherichia coli BL21(DE3)Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)Electron microscopy3.09612024-06-05

Release history

Release3.3663.3673.3683.3693.3703.3713.3723.3733.3743.3753.3763.377
Date2024-12-182024-12-252025-01-012025-01-082025-01-152025-01-222025-01-292025-02-052025-02-122025-02-192025-02-262025-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
18QBL|1|bRetron-Eco1 filament with inactive effector (E106A, 2 segments)ELECTRON MICROSCOPY2.6661
28QBM|1|bRetron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)ELECTRON MICROSCOPY3.0961
38QBK|1|RRetron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment)ELECTRON MICROSCOPY2.9961
48QBK|1|WRetron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment)ELECTRON MICROSCOPY2.9961
58QBM|1|ORetron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)ELECTRON MICROSCOPY3.0961
68QBL|1|RRetron-Eco1 filament with inactive effector (E106A, 2 segments)ELECTRON MICROSCOPY2.6661
78QBL|1|WRetron-Eco1 filament with inactive effector (E106A, 2 segments)ELECTRON MICROSCOPY2.6661
88QBL|1|MRetron-Eco1 filament with inactive effector (E106A, 2 segments)ELECTRON MICROSCOPY2.6658
98QBL|1|CRetron-Eco1 filament with inactive effector (E106A, 2 segments)ELECTRON MICROSCOPY2.6661
108QBM|1|MRetron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)ELECTRON MICROSCOPY3.0961
118QBM|1|WRetron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)ELECTRON MICROSCOPY3.0961
128QBM|1|CRetron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)ELECTRON MICROSCOPY3.0961
138QBM|1|RRetron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)ELECTRON MICROSCOPY3.0961
148QBK|1|CRetron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment)ELECTRON MICROSCOPY2.9961
158QBK|1|MRetron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment)ELECTRON MICROSCOPY2.9961
168QBL|1|ORetron-Eco1 filament with inactive effector (E106A, 2 segments)ELECTRON MICROSCOPY2.6661
177V9X|1|H+ 7V9X|1|ICryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.8 angstromELECTRON MICROSCOPY2.8258
187XJG|1|H+ 7XJG|1|ICryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.5 angstromELECTRON MICROSCOPY2.5158
197XJG|1|E+ 7XJG|1|FCryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.5 angstromELECTRON MICROSCOPY2.5158
207V9X|1|E+ 7V9X|1|FCryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.8 angstromELECTRON MICROSCOPY2.8258
219JM0|1|Eretron Ec86-effector fiberELECTRON MICROSCOPY2.758
229JM0|1|H+ 9JM0|1|Gretron Ec86-effector fiberELECTRON MICROSCOPY2.797
237V9U|1|G+ 7V9U|1|HCryo-EM structure of E.coli retron-Ec86 (RT-msDNA-RNA) at 3.2 angstromELECTRON MICROSCOPY3.1258
247V9U|1|E+ 7V9U|1|FCryo-EM structure of E.coli retron-Ec86 (RT-msDNA-RNA) at 3.2 angstromELECTRON MICROSCOPY3.1257
259JM0|1|Nretron Ec86-effector fiberELECTRON MICROSCOPY2.758
269JM0|1|R+ 9JM0|1|Qretron Ec86-effector fiberELECTRON MICROSCOPY2.797

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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