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Equivalence class NR_3.5_81815.5 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18T2X|1|tP (rep)Transfer RNAP site tRNASaccharomyces cerevisiaeEukaryaRF00005Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PREElectron microscopy2.46752024-12-11
28T2Y|1|tPTransfer RNAP site tRNASaccharomyces cerevisiaeEukaryaRF00005Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PREElectron microscopy2.2752024-12-11
38T2X|1|tATransfer RNAA site tRNASaccharomyces cerevisiaeEukaryaRF00005Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PREElectron microscopy2.46762024-12-11
48T2Y|1|tATransfer RNAA site tRNASaccharomyces cerevisiaeEukaryaRF00005Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PREElectron microscopy2.2762024-12-11
56TB3|1|nTransfer RNAmRNA, tRNASaccharomyces cerevisiaeEukaryaRF00005yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexElectron microscopy2.8752020-04-22
68T2Z|1|tPTransfer RNAP site tRNASaccharomyces cerevisiaeEukaryaRF00005Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POSTElectron microscopy2.4752024-12-11
78K82|1|C5Transfer RNAtRNASaccharomyces cerevisiaeEukaryaRF00005Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNAElectron microscopy3752024-07-10
88T2Z|1|tATransfer RNAA site tRNASaccharomyces cerevisiaeEukaryaRF00005Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POSTElectron microscopy2.4762024-12-11
96TNU|1|nTransfer RNAmRNA, P-site tRNASaccharomyces cerevisiaeEukaryaRF00005Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.Electron microscopy3.1752020-04-22
108UT0|1|nTransfer RNAP site initiator tRNASaccharomyces cerevisiaeEukaryaRF00005Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNAElectron microscopy3.22752024-11-06
118UTI|1|nTransfer RNAP site initiator tRNASaccharomyces cerevisiaeEukaryaRF00005Eukaryotic 80S ribosome with Reh1 and A/P site tRNAElectron microscopy3.13752024-11-06
128Z70|1|tTransfer RNAtRNASaccharomyces cerevisiae S288CEukaryaRF00005State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decodingElectron microscopy3.2752024-12-11
138XU8|1|sTransfer RNAtRNASaccharomyces cerevisiae S288CEukaryaRF00005State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferationElectron microscopy3.4752024-12-11
148CAS|1|1Transfer RNAmRNA, tRNASaccharomyces cerevisiae W303EukaryaRF00005Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)Electron microscopy3.3752023-05-24
157B7D|1|SnTransfer RNAmRNA, tRNASaccharomyces cerevisiae S288CEukaryaRF00005Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsElectron microscopy3.3752021-03-10
168XU8|1|tTransfer RNAtRNASaccharomyces cerevisiae S288CEukaryaRF00005State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferationElectron microscopy3.4752024-12-11
178RW1|1|1Transfer RNAMet-tRNAiSaccharomyces cerevisiae S288CEukaryaRF00005Structure of a yeast 48S-AUC preinitiation complex in closed conformationElectron microscopy3.35752024-09-11
186FYX|1|1Transfer RNAmRNA (31-MER), tRNAiSaccharomyces cerevisiaeEukaryaRF00005Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)Electron microscopy3.5752018-12-05
198S8D|1|1Transfer RNAMet-tRNAiSaccharomyces cerevisiae S288CEukaryaRF00005Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)Electron microscopy3.45752024-09-11
209YDC|1|nTransfer RNAmessenger RNA, P site tRNASaccharomyces cerevisiae S288CEukaryaRF00005Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass conditionElectron microscopy3.02662026-09-30
217B7D|1|SmTransfer RNAmRNA, tRNASaccharomyces cerevisiae S288CEukaryaRF00005Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsElectron microscopy3.3752021-03-10
226FYY|1|1Transfer RNAmRNA (31-MER), tRNAiSaccharomyces cerevisiaeEukaryaRF00005Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)Electron microscopy3.02752018-12-05
239YDD|1|nTransfer RNAmessenger RNA, P site tRNASaccharomyces cerevisiae S288CEukaryaRF00005Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass conditionElectron microscopy2.66672026-09-30
249YDE|1|nTransfer RNAmessenger RNA, P site tRNASaccharomyces cerevisiae S288CEukaryaRF00005Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass conditionElectron microscopy2.82662026-09-30
251YFG|1|ATransfer RNAYEAST INITIATOR TRNASaccharomyces cerevisiaeEukaryaRF00005YEAST INITIATOR TRNAX-ray diffraction3751997-09-03

Release history

Release4.59
Date2026-09-30

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
19YDD|1|nEukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass conditionELECTRON MICROSCOPY2.6667
29YDE|1|nEukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass conditionELECTRON MICROSCOPY2.8266
38T2Z|1|tAHypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POSTELECTRON MICROSCOPY2.476
48T2Y|1|tAHypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PREELECTRON MICROSCOPY2.276
58T2X|1|tAHypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PREELECTRON MICROSCOPY2.4676
68XU8|1|sState 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferationELECTRON MICROSCOPY3.475
77B7D|1|SmYeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsELECTRON MICROSCOPY3.375
88T2Z|1|tPHypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POSTELECTRON MICROSCOPY2.475
98T2Y|1|tPHypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PREELECTRON MICROSCOPY2.275
108T2X|1|tPHypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PREELECTRON MICROSCOPY2.4675
118UT0|1|nEukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNAELECTRON MICROSCOPY3.2275
126TNU|1|nYeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.175
138UTI|1|nEukaryotic 80S ribosome with Reh1 and A/P site tRNAELECTRON MICROSCOPY3.1375
148XU8|1|tState 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferationELECTRON MICROSCOPY3.475
157B7D|1|SnYeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsELECTRON MICROSCOPY3.375
168Z70|1|tState 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decodingELECTRON MICROSCOPY3.275
176TB3|1|nyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.875
188K82|1|C5Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNAELECTRON MICROSCOPY375
191YFG|1|AYEAST INITIATOR TRNAX-RAY DIFFRACTION375
208RW1|1|1Structure of a yeast 48S-AUC preinitiation complex in closed conformationELECTRON MICROSCOPY3.3575
218S8D|1|1Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)ELECTRON MICROSCOPY3.4575
226FYY|1|1Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)ELECTRON MICROSCOPY3.0275
236FYX|1|1Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)ELECTRON MICROSCOPY3.575
248CAS|1|1Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)ELECTRON MICROSCOPY3.375
259YDC|1|nEukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass conditionELECTRON MICROSCOPY3.0266

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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