Equivalence class NR_3.5_82809.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3GX5|1|A (rep) | RNA (94-MER) | Crystal structure of T. tencongensis SAM-I riboswitch variant A94G/U34 bound with SAM | X-ray diffraction | 2.4 | 2010-01-12 | ||||
| 2 | 2GIS|1|A | SAM-I riboswitch | Structure of the S-adenosylmethionine riboswitch mRNA regulatory element | X-ray diffraction | 2.9 | 2006-07-04 | ||||
| 3 | 3GX6|1|A | RNA (94-MER) | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese chloride | X-ray diffraction | 2.8 | 2010-01-12 | ||||
| 4 | 3IQR|1|A | SAM-I riboswitch | SAM-I riboswitch from T. tencongensis variant A94G bound with SAM | X-ray diffraction | 2.55 | 2010-08-04 | ||||
| 5 | 3IQP|1|A | SAM-I riboswitch | SAM-I riboswitch from T. tencongensis variant A94G apo form | X-ray diffraction | 2.9 | 2010-08-04 | ||||
| 6 | 3GX2|1|A | RNA (94-MER) | TteSAM-I riboswitch variant A94GU34C bound to sinefungin | X-ray diffraction | 2.9 | 2010-01-12 | ||||
| 7 | 3IQN|1|A | SAM-I riboswitch | Free-state structural transitions of the SAM-I riboswitch | X-ray diffraction | 2.7 | 2010-08-04 | ||||
| 8 | 2YDH|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | Crystal structure of the SAM-I riboswitch A94G U34 G18U G19U variant in complex with SAM | X-ray diffraction | 2.9 | 2011-09-07 |
| 9 | 3GX7|1|A | RNA (94-MER) | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G mutant A6C/U7G/A87C/U88G bound with SAM | X-ray diffraction | 2.95 | 2010-01-12 | ||||
| 10 | 3GX3|1|A | RNA (94-MER) | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAH | X-ray diffraction | 2.7 | 2010-01-12 |
Release history
| Release | 2.0 | 2.1 | 2.2 | 2.3 | 2.4 | 2.5 | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 | 2.93 | 2.94 | 2.95 | 2.96 | 2.97 | 2.98 | 2.99 | 2.100 | 2.101 | 2.102 | 2.103 | 2.104 | 2.105 | 2.106 | 2.107 | 2.108 | 2.109 | 2.110 | 2.111 | 2.112 | 2.113 | 2.114 | 2.115 | 2.116 | 2.117 | 2.118 | 2.119 | 2.120 | 2.121 | 2.122 | 2.123 |
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| Date | 2014-12-05 | 2014-12-12 | 2014-12-19 | 2014-12-26 | 2015-01-02 | 2015-01-09 | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 | 2016-09-16 | 2016-09-23 | 2016-09-30 | 2016-10-07 | 2016-10-14 | 2016-10-21 | 2016-10-28 | 2016-11-04 | 2016-11-11 | 2016-11-18 | 2016-11-25 | 2016-12-02 | 2016-12-09 | 2016-12-16 | 2016-12-23 | 2016-12-30 | 2017-01-06 | 2017-01-13 | 2017-01-20 | 2017-01-27 | 2017-02-03 | 2017-02-10 | 2017-02-17 | 2017-02-24 | 2017-03-03 | 2017-03-10 | 2017-03-17 | 2017-03-24 | 2017-03-31 | 2017-04-11 | 2017-04-15 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 3IQN|1|A | Free-state structural transitions of the SAM-I riboswitch | X-RAY DIFFRACTION | 2.7 | 94 | |
| 2 | 2GIS|1|A | Structure of the S-adenosylmethionine riboswitch mRNA regulatory element | X-RAY DIFFRACTION | 2.9 | 94 | |
| 3 | 3GX2|1|A | TteSAM-I riboswitch variant A94GU34C bound to sinefungin | X-RAY DIFFRACTION | 2.9 | 94 | |
| 4 | 3GX5|1|A | Crystal structure of T. tencongensis SAM-I riboswitch variant A94G/U34 bound with SAM | X-RAY DIFFRACTION | 2.4 | 94 | |
| 5 | 2YDH|1|A | Crystal structure of the SAM-I riboswitch A94G U34 G18U G19U variant in complex with SAM | X-RAY DIFFRACTION | 2.9 | 94 | |
| 6 | 3GX6|1|A | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese chloride | X-RAY DIFFRACTION | 2.8 | 94 | |
| 7 | 3GX7|1|A | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G mutant A6C/U7G/A87C/U88G bound with SAM | X-RAY DIFFRACTION | 2.95 | 94 | |
| 8 | 3GX3|1|A | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAH | X-RAY DIFFRACTION | 2.7 | 94 | |
| 9 | 3IQR|1|A | SAM-I riboswitch from T. tencongensis variant A94G bound with SAM | X-RAY DIFFRACTION | 2.55 | 94 | |
| 10 | 3IQP|1|A | SAM-I riboswitch from T. tencongensis variant A94G apo form | X-RAY DIFFRACTION | 2.9 | 94 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: