#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18K2C|1|CC (rep)Transfer RNAtRNA-MetHomo sapiensEukaryaRF00005Cryo-EM structure of the human 80S ribosome with TigecyclineElectron microscopy2.42024-07-10
28XSX|1|CCTransfer RNAE-tRNAHomo sapiensEukaryaRF00005Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2Electron microscopy2.42024-07-10
36ZP4|1|1Transfer RNAtRNAHomo sapiensEukaryaRF00005SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2Electron microscopy2.92020-07-29
48PJ5|1|wTransfer RNAInitiator Met-tRNA-iHomo sapiensEukaryaRF00005Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)Electron microscopy2.92024-08-14
56QZP|1|S6Transfer RNAE site tRNA (75-MER)Homo sapiensEukaryaRF00005High-resolution cryo-EM structure of the human 80S ribosomeElectron microscopy2.92019-04-24
68PPL|1|IwTransfer RNAMet-tRNAi(Met)Homo sapiensEukaryaRF00005MERS-CoV Nsp1 bound to the human 43S pre-initiation complexElectron microscopy2.652023-10-18
78PJ6|1|wTransfer RNAInitiator Met-tRNA-iHomo sapiensEukaryaRF00005Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)Electron microscopy2.92024-08-14
87QVP|1|B5Transfer RNAmRNA, tRNA P/EHomo sapiensEukaryaRF00005Human collided disome (di-ribosome) stalled on XBP1 mRNAElectron microscopy32022-10-12
98XSZ|1|CCTransfer RNAtRNAHomo sapiensEukaryaRF00005Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNAElectron microscopy3.22024-07-10
108XSZ|1|CDTransfer RNAtRNAHomo sapiensEukaryaRF00005Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNAElectron microscopy3.22024-07-10
118PJ4|1|wTransfer RNAInitiator Met-tRNA-iHomo sapiensEukaryaRF00005Structure of human 48S translation initiation complex after eIF5 release (48S-4)Electron microscopy3.22024-08-14
128XSY|1|CCTransfer RNAE-tRNAHomo sapiensEukaryaRF00005Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)Electron microscopy32024-07-10
138PJ1|1|wTransfer RNAInitiator Met-tRNA-iHomo sapiensEukaryaRF00005Structure of human 48S translation initiation complex in open codon scanning state (48S-1)Electron microscopy3.42024-08-14
148PJ2|1|wTransfer RNAInitiator Met-tRNA-iHomo sapiensEukaryaRF00005Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)Electron microscopy3.42024-08-14
157A09|1|fTransfer RNAtRNAHomo sapiensEukaryaRF00005Structure of a human ABCE1-bound 43S pre-initiation complex - State IIIElectron microscopy3.52020-10-14
166Y57|1|B4Transfer RNAmRNA, P/E tRNAHomo sapiensEukaryaRF00005Structure of human ribosome in hybrid-PRE stateElectron microscopy3.52020-04-15

Release history

Release3.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.3643.3653.3663.3673.3683.3693.3703.3713.372
Date2024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-042024-12-112024-12-182024-12-252025-01-012025-01-082025-01-152025-01-222025-01-29

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
16QZP|1|S6High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.975
28XSY|1|CCCryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)ELECTRON MICROSCOPY369
38K2C|1|CCCryo-EM structure of the human 80S ribosome with TigecyclineELECTRON MICROSCOPY2.475
48XSZ|1|CCCryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNAELECTRON MICROSCOPY3.275
58XSX|1|CCCryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2ELECTRON MICROSCOPY2.475
67QVP|1|B5Human collided disome (di-ribosome) stalled on XBP1 mRNAELECTRON MICROSCOPY375
76Y57|1|B4Structure of human ribosome in hybrid-PRE stateELECTRON MICROSCOPY3.575
88XSZ|1|CDCryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNAELECTRON MICROSCOPY3.275
98PJ2|1|wStructure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)ELECTRON MICROSCOPY3.475
108PJ6|1|wStructure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)ELECTRON MICROSCOPY2.975
117A09|1|fStructure of a human ABCE1-bound 43S pre-initiation complex - State IIIELECTRON MICROSCOPY3.575
126ZP4|1|1SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2ELECTRON MICROSCOPY2.975
138PPL|1|IwMERS-CoV Nsp1 bound to the human 43S pre-initiation complexELECTRON MICROSCOPY2.6567
148PJ1|1|wStructure of human 48S translation initiation complex in open codon scanning state (48S-1)ELECTRON MICROSCOPY3.475
158PJ5|1|wStructure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)ELECTRON MICROSCOPY2.975
168PJ4|1|wStructure of human 48S translation initiation complex after eIF5 release (48S-4)ELECTRON MICROSCOPY3.275

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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