RNA 3D Hub //

Equivalence class NR_3.5_83891.25 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
14WF9|1|Y (rep)5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycinX-ray diffraction3.431142015-10-21
24WFA|1|Y5S ribosomal RNA5S rRNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolidX-ray diffraction3.391142015-10-21
34WFB|1|Y5S ribosomal RNA5S rRNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205X-ray diffraction3.431142015-10-21
45NRG|1|Y5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02X-ray diffraction3.441142017-08-09
58P2G|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00001Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric stateElectron microscopy2.021132024-05-01
69QEH|1|B5S ribosomal RNA5S rRNAStaphylococcus aureus subsp. aureus USA300BacteriaRF00001Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycinElectron microscopy2.081132025-06-04
79GHG|1|B5S ribosomal RNA5S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00001Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)Electron microscopy2.221132025-03-26
89QEG|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureus subsp. aureus USA300BacteriaRF00001Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycinElectron microscopy2.211132025-06-04
96S0Z|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.Electron microscopy2.31142019-08-21
106S0X|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.Electron microscopy2.421152019-08-21
118P2F|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00001Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational stateElectron microscopy2.441132024-05-01
128Y37|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.Electron microscopy2.531152024-07-24
138P2H|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00001Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric stateElectron microscopy2.491132024-05-01
148Y38|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.Electron microscopy2.581152024-07-24
156HMA|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunitElectron microscopy2.651152018-11-14
167ASM|1|B5S ribosomal RNA5S rRNAStaphylococcus aureusBacteriaRF00001Staphylococcus aureus 50S after 30 minutes incubation at 37CElectron microscopy2.481152021-11-17
179GHH|1|B5S ribosomal RNA5S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00001Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)Electron microscopy2.71132025-03-26
188Y36|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.Electron microscopy2.651152024-07-24
197ASP|1|35S ribosomal RNA5S rRNAStaphylococcus aureusBacteriaRF00001Staphylococcus aureus 70S after 50 minutes incubation at 37CElectron microscopy2.861142021-11-17
205NGM|1|AB5S ribosomal RNA5S Ribosomal RNAStaphylococcus aureusBacteriaRF000012.9S structure of the 70S ribosome composing the S. aureus 100S complexElectron microscopy2.91152017-10-04
217P48|1|B5S ribosomal RNA5S rRNAStaphylococcus aureusBacteriaRF00001Staphylococcus aureus ribosome in complex with Sal(B)Electron microscopy2.91132022-02-02
227ASO|1|C5S ribosomal RNA5SStaphylococcus aureusBacteriaRF00001Staphylococcus aureus 70S after 30 minutes incubation at 37CElectron microscopy3.111142021-11-17
237NHM|1|B5S ribosomal RNA5S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0000170S ribosome from Staphylococcus aureusElectron microscopy3.11132021-05-05
247NHL|1|B5S ribosomal RNA5S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00001VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusElectron microscopy3.11132021-05-05
256YEF|1|B5S ribosomal RNA5S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0000170S initiation complex with assigned rRNA modifications from Staphylococcus aureusElectron microscopy3.21152021-01-27
267ASN|1|B5S ribosomal RNA5SStaphylococcus aureusBacteriaRF00001Staphylococcus aureus 50S after 30 minutes incubation a 37CElectron microscopy2.731062021-11-17
276SJ6|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureusElectron microscopy3.231122020-04-08
286S12|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).Electron microscopy3.21152019-08-21

Release history

Release3.3903.3913.3923.3933.3943.3953.3963.3973.3983.399
Date2025-06-042025-06-112025-06-182025-06-252025-07-022025-07-092025-07-162025-07-232025-07-302025-08-06

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17ASN|1|BStaphylococcus aureus 50S after 30 minutes incubation a 37CELECTRON MICROSCOPY2.73106
26SJ6|1|BCryo-EM structure of 50S-RsfS complex from Staphylococcus aureusELECTRON MICROSCOPY3.23112
36S12|1|BErythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).ELECTRON MICROSCOPY3.2115
48Y36|1|Bcryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.ELECTRON MICROSCOPY2.65115
57NHL|1|BVgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.1113
67NHM|1|B70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.1113
75NGM|1|AB2.9S structure of the 70S ribosome composing the S. aureus 100S complexELECTRON MICROSCOPY2.9115
86S0Z|1|BErythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.3114
96S0X|1|BErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.42115
107P48|1|BStaphylococcus aureus ribosome in complex with Sal(B)ELECTRON MICROSCOPY2.9113
116HMA|1|BImproved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunitELECTRON MICROSCOPY2.65115
127ASM|1|BStaphylococcus aureus 50S after 30 minutes incubation at 37CELECTRON MICROSCOPY2.48115
136YEF|1|B70S initiation complex with assigned rRNA modifications from Staphylococcus aureusELECTRON MICROSCOPY3.2115
148P2F|1|BStaphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational stateELECTRON MICROSCOPY2.44113
158P2H|1|BStaphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric stateELECTRON MICROSCOPY2.49113
168P2G|1|BStaphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric stateELECTRON MICROSCOPY2.02113
179GHG|1|BStaphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)ELECTRON MICROSCOPY2.22113
189GHH|1|BStaphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)ELECTRON MICROSCOPY2.7113
199QEG|1|BCryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycinELECTRON MICROSCOPY2.21113
209QEH|1|BCryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycinELECTRON MICROSCOPY2.08113
218Y37|1|BCryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.ELECTRON MICROSCOPY2.53115
228Y38|1|BCryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.ELECTRON MICROSCOPY2.58115
234WFA|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolidX-RAY DIFFRACTION3.39114
244WFB|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205X-RAY DIFFRACTION3.43114
254WF9|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycinX-RAY DIFFRACTION3.43114
265NRG|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02X-RAY DIFFRACTION3.44114
277ASP|1|3Staphylococcus aureus 70S after 50 minutes incubation at 37CELECTRON MICROSCOPY2.86114
287ASO|1|CStaphylococcus aureus 70S after 30 minutes incubation at 37CELECTRON MICROSCOPY3.11114

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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