NR_3.5_83979.1

Members (15)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	2Z75\|1\|B+ 2Z75\|1\|A (rep)	glmS glucosamine-6-phosphate activated ribozyme	glmS ribozyme RNA, glmS ribozyme substrate RNA	Caldanaerobacter subterraneus	Bacteria	RF00234	T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate	X-ray diffraction	1.7	144	2007-09-04
2	2Z74\|1\|B+ 2Z74\|1\|A		glmS ribozyme RNA, glmS ribozyme substrate RNA				T. tengcongensis glmS ribozyme bound to glucose-6-phosphate	X-ray diffraction	2.2	144	2007-09-04
3	2GCV\|1\|B+ 2GCV\|1\|A		glmS ribozyme product oligonucleotide, glmS ribozyme RNA				Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-ray diffraction	2.1	143	2006-09-26
4	2H0X\|1\|B+ 2H0X\|1\|A		glmS ribozyme amino RNA inhibitor, glmS ribozyme RNA				Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-ray diffraction	2.3	143	2006-09-26
5	2H0W\|1\|B+ 2H0W\|1\|A		glmS ribozyme product oligonucleotide, glmS ribozyme RNA				Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-ray diffraction	2.4	143	2006-09-26
6	2GCS\|1\|B+ 2GCS\|1\|A		glmS ribozyme amino RNA inhibitor, glmS ribozyme RNA				Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-ray diffraction	2.1	143	2006-09-26
7	3B4B\|1\|B+ 3B4B\|1\|A	glmS glucosamine-6-phosphate activated ribozyme	glmS ribozyme RNA, glmS ribozyme substrate with 2'5'-phosphodiester linkage	Caldanaerobacter subterraneus	Bacteria	RF00234	T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage	X-ray diffraction	2.7	143	2007-12-11
8	2HO6\|1\|B+ 2HO6\|1\|A		glmS ribozyme RNA, glmS ribozyme substrate RNA				Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-ray diffraction	2.8	143	2006-09-26
9	2HO7\|1\|B+ 2HO7\|1\|A		glmS ribozyme RNA, glmS ribozyme substrate RNA				Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate	X-ray diffraction	2.9	144	2006-09-26
10	3B4A\|1\|B+ 3B4A\|1\|A	glmS glucosamine-6-phosphate activated ribozyme	glmS ribozyme RNA, glmS ribozyme substrate RNA	Caldanaerobacter subterraneus	Bacteria	RF00234	T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate	X-ray diffraction	2.7	144	2007-12-11
11	4MEG\|1\|B+ 4MEG\|1\|A		(121-MER) ribozyme, glmS triple mutant ribozyme				In vitro evolved glmS ribozyme triple mutant, magnesium ion complex	X-ray diffraction	3.1	139	2013-10-16
12	3B4C\|1\|B+ 3B4C\|1\|A	glmS glucosamine-6-phosphate activated ribozyme	glmS ribozyme RNA, glmS ribozyme substrate with a 2'5'-phosphodiester linkage	Caldanaerobacter subterraneus	Bacteria	RF00234	T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage	X-ray diffraction	3	141	2007-12-11
13	4MEH\|1\|B+ 4MEH\|1\|A		(122-MER) ribozyme, glmS triple mutant ribozyme				In vitro evolved glmS ribozyme triple mutant, calcium ion complex	X-ray diffraction	3.12	144	2013-10-16
14	2H0S\|1\|B+ 2H0S\|1\|A		glmS ribozyme deoxy RNA inhibitor, glmS ribozyme RNA				Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-ray diffraction	2.35	145	2006-09-26
15	2H0Z\|1\|B+ 2H0Z\|1\|A		glmS ribozyme deoxy RNA inhibitor, glmS ribozyme RNA				Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate	X-ray diffraction	2.7	144	2006-09-26

Release history

Release	3.378	3.379	3.380	3.381	3.382	3.383	3.384	3.385	3.386	3.387	3.388	3.389
Date	2025-03-13	2025-03-19	2025-03-26	2025-04-02	2025-04-09	2025-04-16	2025-04-23	2025-04-30	2025-05-07	2025-05-14	2025-05-21	2025-05-28

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	View	PDB	Title	Method	Resolution	#NTs
1		4MEG\|1\|B+ 4MEG\|1\|A	In vitro evolved glmS ribozyme triple mutant, magnesium ion complex	X-RAY DIFFRACTION	3.1	139
2		2H0S\|1\|B+ 2H0S\|1\|A	Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-RAY DIFFRACTION	2.35	145
3		2GCV\|1\|B+ 2GCV\|1\|A	Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-RAY DIFFRACTION	2.1	143
4		2H0W\|1\|B+ 2H0W\|1\|A	Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-RAY DIFFRACTION	2.4	143
5		2HO6\|1\|B+ 2HO6\|1\|A	Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-RAY DIFFRACTION	2.8	143
6		2HO7\|1\|B+ 2HO7\|1\|A	Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate	X-RAY DIFFRACTION	2.9	144
7		3B4B\|1\|B+ 3B4B\|1\|A	T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage	X-RAY DIFFRACTION	2.7	143
8		2GCS\|1\|B+ 2GCS\|1\|A	Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-RAY DIFFRACTION	2.1	143
9		2H0X\|1\|B+ 2H0X\|1\|A	Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-RAY DIFFRACTION	2.3	143
10		2Z75\|1\|B+ 2Z75\|1\|A	T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate	X-RAY DIFFRACTION	1.7	144
11		2H0Z\|1\|B+ 2H0Z\|1\|A	Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate	X-RAY DIFFRACTION	2.7	144
12		2Z74\|1\|B+ 2Z74\|1\|A	T. tengcongensis glmS ribozyme bound to glucose-6-phosphate	X-RAY DIFFRACTION	2.2	144
13		3B4A\|1\|B+ 3B4A\|1\|A	T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate	X-RAY DIFFRACTION	2.7	144
14		3B4C\|1\|B+ 3B4C\|1\|A	T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage	X-RAY DIFFRACTION	3	141
15		4MEH\|1\|B+ 4MEH\|1\|A	In vitro evolved glmS ribozyme triple mutant, calcium ion complex	X-RAY DIFFRACTION	3.12	144

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Copyright 2025 BGSU RNA group. Page generated in 0.1821 s