Equivalence class NR_3.5_89171.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6RLP|1|R (rep) | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 2 | 6RLP|1|Z | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 3 | 6RLP|1|a | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 4 | 6RLP|1|b | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 5 | 6RLP|1|c | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 6 | 6RLP|1|d | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 7 | 6RLP|1|e | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 8 | 6RLP|1|f | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 9 | 6RLP|1|g | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 10 | 6RLP|1|h | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 11 | 6RLP|1|i | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 12 | 6RLP|1|j | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 13 | 6RLP|1|k | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 14 | 6RLP|1|l | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 15 | 6RLP|1|m | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 16 | 6RLP|1|n | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 17 | 6RLP|1|o | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 18 | 6RLP|1|p | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 19 | 6RLP|1|q | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 20 | 6RLP|1|r | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 21 | 6RLP|1|s | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 22 | 6RLP|1|t | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 23 | 6RLP|1|u | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 24 | 6RLP|1|v | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 3 | 2022-11-23 | |||
| 25 | 2TMV|1|R | RNA (5'-R(P*GP*AP*A)-3') | VISUALIZATION OF PROTEIN-NUCLEIC ACID INTERACTIONS IN A VIRUS. REFINED STRUCTURE OF INTACT TOBACCO MOSAIC VIRUS AT 2.9 ANGSTROMS RESOLUTION BY X-RAY FIBER DIFFRACTION | Fiber diffraction | 2.9 | 3 | 1989-01-09 | ||||
| 26 | 1CGM|1|I | RNA (5'-R(P*GP*AP*A)-3') | STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES | Fiber diffraction | 3.4 | 3 | 1994-04-30 | ||||
| 27 | 7Q2R|1|B | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus (vulgare) | cryo iDPC-STEM structure recorded with CSA 4.0 | Electron microscopy | 3.5 | 3 | 2022-09-21 | |||
| 28 | 8U3B|1|3 | RNA (5'-D(*(GTP))-R(P*AP*A)-3') | Escherichia coli | Cryo-EM structure of E. coli NarL-transcription activation complex at 3.2A | Electron microscopy | 3.23 | 2 | 2024-01-17 | |||
| 29 | 3PDM|1|R | RNA (5'-R(P*GP*AP*A)-3') | Hibiscus Latent Singapore virus | Fiber diffraction | 3.5 | 3 | 2011-01-12 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 8U3B|1|3 | Cryo-EM structure of E. coli NarL-transcription activation complex at 3.2A | ELECTRON MICROSCOPY | 3.23 | 2 | |
| 2 | 6RLP|1|r | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 3 | 6RLP|1|q | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 4 | 6RLP|1|Z | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 5 | 6RLP|1|h | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 6 | 6RLP|1|p | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 7 | 6RLP|1|f | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 8 | 6RLP|1|n | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 9 | 6RLP|1|d | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 10 | 6RLP|1|v | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 11 | 6RLP|1|k | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 12 | 6RLP|1|u | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 13 | 6RLP|1|R | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 14 | 6RLP|1|j | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 15 | 6RLP|1|l | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 16 | 6RLP|1|o | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 17 | 6RLP|1|i | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 18 | 6RLP|1|m | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 19 | 6RLP|1|b | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 20 | 6RLP|1|a | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 21 | 6RLP|1|s | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 22 | 6RLP|1|c | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 23 | 6RLP|1|t | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 24 | 6RLP|1|g | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 25 | 6RLP|1|e | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 26 | 7Q2R|1|B | cryo iDPC-STEM structure recorded with CSA 4.0 | ELECTRON MICROSCOPY | 3.5 | 3 | |
| 27 | 2TMV|1|R | VISUALIZATION OF PROTEIN-NUCLEIC ACID INTERACTIONS IN A VIRUS. REFINED STRUCTURE OF INTACT TOBACCO MOSAIC VIRUS AT 2.9 ANGSTROMS RESOLUTION BY X-RAY FIBER DIFFRACTION | FIBER DIFFRACTION | 2.9 | 3 | |
| 28 | 1CGM|1|I | STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES | FIBER DIFFRACTION | 3.4 | 3 | |
| 29 | 3PDM|1|R | Hibiscus Latent Singapore virus | FIBER DIFFRACTION | 3.5 | 3 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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