Equivalence class NR_3.5_89906.1 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 3WFS|1|A (rep) | Transfer RNA | RNA (74-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 3 | X-ray diffraction | 3.31 | 2014-01-01 |
2 | 3WFS|1|B | Transfer RNA | RNA (74-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 3 | X-ray diffraction | 3.31 | 2014-01-01 |
3 | 3WFR|1|C | Transfer RNA | RNA (75-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 2 | X-ray diffraction | 3.5 | 2014-01-01 |
4 | 3WFR|1|D | Transfer RNA | RNA (75-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 2 | X-ray diffraction | 3.5 | 2014-01-01 |
5 | 3WFR|1|B | Transfer RNA | RNA (74-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 2 | X-ray diffraction | 3.5 | 2014-01-01 |
6 | 4WC5|1|B | Transfer RNA | RNA (74-MER) | Thermotoga maritima | Bacteria | RF00005 | Structure of tRNA-processing enzyme complex 3 | X-ray diffraction | 3.41 | 2015-04-15 |
7 | 3WFR|1|A | Transfer RNA | RNA (74-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 2 | X-ray diffraction | 3.5 | 2014-01-01 |
8 | 4WC6|1|B | Transfer RNA | RNA (75-mer) | Thermotoga maritima | Bacteria | RF00005 | Structure of tRNA-processing enzyme complex 4 | X-ray diffraction | 3.41 | 2015-04-15 |
9 | 4WC2|1|B | Transfer RNA | RNA 75-mer | Thermotoga maritima | Bacteria | RF00005 | Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog | X-ray diffraction | 2.8 | 2015-04-15 |
10 | 4WC4|1|B | Transfer RNA | RNA (74-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA-processing enzyme complex 2 | X-ray diffraction | 3.5 | 2015-04-15 |
11 | 4WC7|1|B | Transfer RNA | RNA (75-MER) | Thermotoga maritima | Bacteria | RF00005 | Structure of tRNA-processing enzyme complex 5 | X-ray diffraction | 3.1 | 2015-04-15 |
12 | 4WC3|1|B | Transfer RNA | RNA 76-mer | Thermotoga maritima | Bacteria | RF00005 | Structure of tRNA-processing enzyme complex 1 | X-ray diffraction | 3.1 | 2015-04-15 |
13 | 4X0B|1|B | Transfer RNA | RNA (77-MER) | Thermotoga maritima | Bacteria | RF00005 | Structure of tRNA-processing enzyme complex 7 | X-ray diffraction | 3.2 | 2015-04-15 |
14 | 1VFG|1|C | RNA (75-MER) | Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog | X-ray diffraction | 2.8 | 2004-08-10 | ||||
15 | 1VFG|1|D | RNA (75-MER) | Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog | X-ray diffraction | 2.8 | 2004-08-10 |
Release history
Release | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 |
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Date | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
---|---|---|---|---|---|
NR_3.5_89906.1 | NR_all_87177.1 | 2.19 | (8) 1VFG|1|C, 1VFG|1|D, 3WFR|1|A, 3WFR|1|B, 3WFR|1|C, 3WFR|1|D, 3WFS|1|A, 3WFS|1|B | (7) 4WC2|1|B, 4WC3|1|B, 4WC4|1|B, 4WC5|1|B, 4WC6|1|B, 4WC7|1|B, 4X0B|1|B | (4) 3WFQ|1|A, 3WFQ|1|B, 3WFQ|1|C, 3WFQ|1|D |
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
#S | View | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|---|
1 | 4X0B|1|B | Structure of tRNA-processing enzyme complex 7 | X-RAY DIFFRACTION | 3.2 | 77 | |
2 | 4WC3|1|B | Structure of tRNA-processing enzyme complex 1 | X-RAY DIFFRACTION | 3.1 | 76 | |
3 | 4WC4|1|B | tRNA-processing enzyme complex 2 | X-RAY DIFFRACTION | 3.5 | 74 | |
4 | 4WC5|1|B | Structure of tRNA-processing enzyme complex 3 | X-RAY DIFFRACTION | 3.41 | 74 | |
5 | 4WC7|1|B | Structure of tRNA-processing enzyme complex 5 | X-RAY DIFFRACTION | 3.1 | 75 | |
6 | 4WC2|1|B | Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog | X-RAY DIFFRACTION | 2.8 | 75 | |
7 | 4WC6|1|B | Structure of tRNA-processing enzyme complex 4 | X-RAY DIFFRACTION | 3.41 | 75 | |
8 | 1VFG|1|D | Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog | X-RAY DIFFRACTION | 2.8 | 34 | |
9 | 1VFG|1|C | Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog | X-RAY DIFFRACTION | 2.8 | 31 | |
10 | 3WFR|1|C | tRNA processing enzyme complex 2 | X-RAY DIFFRACTION | 3.5 | 76 | |
11 | 3WFR|1|D | tRNA processing enzyme complex 2 | X-RAY DIFFRACTION | 3.5 | 76 | |
12 | 3WFR|1|A | tRNA processing enzyme complex 2 | X-RAY DIFFRACTION | 3.5 | 75 | |
13 | 3WFR|1|B | tRNA processing enzyme complex 2 | X-RAY DIFFRACTION | 3.5 | 75 | |
14 | 3WFS|1|B | tRNA processing enzyme complex 3 | X-RAY DIFFRACTION | 3.31 | 74 | |
15 | 3WFS|1|A | tRNA processing enzyme complex 3 | X-RAY DIFFRACTION | 3.31 | 74 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: