RNA 3D Hub //

Equivalence class NR_3.5_90506.34 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
15TBW|1|1+ 5TBW|1|4 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction333072017-07-26
25TBW|1|AR+ 5TBW|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction333072017-07-26
34V88|1|A5+ 4V88|1|A8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction333082014-07-09
44V88|1|A1+ 4V88|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction333072014-07-09
55I4L|1|5+ 5I4L|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.133082016-06-22
65I4L|1|1+ 5I4L|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.133072016-06-22
75MEI|1|AR+ 5MEI|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Agelastatin A bound to the 80S ribosomeX-ray diffraction3.533072017-06-28
85MEI|1|1+ 5MEI|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Agelastatin A bound to the 80S ribosomeX-ray diffraction3.533072017-06-28
96HHQ|1|AR+ 6HHQ|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of compound C45 bound to the yeast 80S ribosomeX-ray diffraction3.133052019-02-20
106HHQ|1|1+ 6HHQ|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of compound C45 bound to the yeast 80S ribosomeX-ray diffraction3.133072019-02-20
115OBM|1|5+ 5OBM|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-ray diffraction3.432922017-12-13
125OBM|1|1+ 5OBM|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-ray diffraction3.432562017-12-13
135LYB|1|5+ 5LYB|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmnSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.2533082016-11-23
145NDV|1|1+ 5NDV|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-ray diffraction3.332352017-12-13
155ON6|1|1+ 5ON6|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of haemanthamine bound to the 80S ribosomeX-ray diffraction3.133072018-02-28
165LYB|1|1+ 5LYB|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmnSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.2533072016-11-23
175ON6|1|AR+ 5ON6|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of haemanthamine bound to the 80S ribosomeX-ray diffraction3.133072018-02-28
185NDV|1|5+ 5NDV|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-ray diffraction3.332452017-12-13
195TGM|1|1+ 5TGM|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-PheSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.533072017-01-18
205TGM|1|5+ 5TGM|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-PheSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.533082017-01-18
215DAT|1|5+ 5DAT|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.1533272016-08-31
225DGV|1|5+ 5DGV|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.133072016-12-14
235DAT|1|1+ 5DAT|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.1533072016-08-31
245DGV|1|1+ 5DGV|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.133062016-12-14
255DGE|1|5+ 5DGE|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.4533082017-01-25
265TGA|1|5+ 5TGA|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.333082016-11-23
275DGF|1|5+ 5DGF|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.333272016-12-14
285TGA|1|1+ 5TGA|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.333072016-11-23
295DGF|1|1+ 5DGF|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.333072016-12-14
305DGE|1|1+ 5DGE|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.4533072017-01-25
315DC3|1|5+ 5DC3|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.2533272016-06-01
325DC3|1|1+ 5DC3|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.2533072016-06-01
336T4Q|1|C1+ 6T4Q|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.Electron microscopy2.633422019-12-25
346TB3|1|BQ+ 6TB3|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexElectron microscopy2.833812020-04-22
356SNT|1|1+ 6SNT|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome stalled on SDD1 mRNA.Electron microscopy2.833422020-03-04
364U4R|1|1+ 4U4R|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.833072014-10-22
374U4R|1|5+ 4U4R|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.833082014-10-22
384U3U|1|5+ 4U3U|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.933082014-10-22
394U3U|1|1+ 4U3U|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.933072014-10-22
404U3M|1|1+ 4U3M|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25s rRNA, 5.8s rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction333072014-10-22
414U4Q|1|5+ 4U4Q|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction333082014-10-22
424U3M|1|5+ 4U3M|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25s rRNA, 5.8s rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction333082014-10-22
434U4U|1|1+ 4U4U|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction333072014-10-22
444U4Q|1|1+ 4U4Q|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction333072014-10-22
454U4U|1|5+ 4U4U|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction333082014-10-22
464U52|1|5+ 4U52|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction333082014-10-22
474U52|1|1+ 4U52|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction333072014-10-22
486Q8Y|1|BQ+ 6Q8Y|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexElectron microscopy3.133192019-03-13
495M1J|1|14+ 5M1J|1|44Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Nonstop ribosomal complex bound with Dom34 and Hbs1Electron microscopy3.334532017-01-18
506T7T|1|C1+ 6T7T|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of yeast 80S ribosome stalled on poly(A) tract.Electron microscopy3.133422019-12-25
514U6F|1|1+ 4U6F|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.133072014-10-22
524U6F|1|5+ 4U6F|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.133082014-10-22
536QIK|1|A+ 6QIK|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.133022019-06-26
546TNU|1|BQ+ 6TNU|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.Electron microscopy3.133422020-04-22
554U4N|1|5+ 4U4N|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.133082014-10-22
564U4Z|1|5+ 4U4Z|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.133082014-10-22
574U4N|1|1+ 4U4N|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.133072014-10-22
584U4Z|1|1+ 4U4Z|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.133072014-10-22
596RZZ|1|A+ 6RZZ|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.233022019-06-26
606T7I|1|C1+ 6T7I|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.Electron microscopy3.233422019-12-25
615T62|1|A+ 5T62|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S Ribosomal RNA, 5.8S Ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexElectron microscopy3.133622017-02-08
624U3N|1|5+ 4U3N|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
634U4Y|1|5+ 4U4Y|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
644U3N|1|1+ 4U3N|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
654U55|1|5+ 4U55|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
666R87|1|1+ 6R87|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)Electron microscopy3.434742019-06-26
674U4Y|1|1+ 4U4Y|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
683JCT|1|1+ 3JCT|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARDN25-1 rRNA, RDN58-1 rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-em structure of eukaryotic pre-60S ribosomal subunitsElectron microscopy3.0832162016-06-01
696S47|1|AA+ 6S47|1|ACLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1Electron microscopy3.2833072019-07-24
704U51|1|5+ 4U51|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
714U51|1|1+ 4U51|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
724U55|1|1+ 4U55|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
734U50|1|5+ 4U50|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
744U50|1|1+ 4U50|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
755H4P|1|1+ 5H4P|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1Electron microscopy3.0732492017-01-25
766R86|1|1+ 6R86|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast Vms1-60S ribosomal subunit complex (post-state)Electron microscopy3.434182019-07-31
775JUP|1|B+ 5JUP|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)Electron microscopy3.534672016-10-05
786HD7|1|1+ 6HD7|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of the ribosome-NatA complexElectron microscopy3.434932018-12-19
796RI5|1|A+ 6RI5|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S RNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.333032019-06-26
806QT0|1|A+ 6QT0|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.433202019-06-26
816N8M|1|A+ 6N8M|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA5.8S RNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunitElectron microscopy3.533612019-03-13
826N8O|1|A+ 6N8O|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunitElectron microscopy3.533592019-03-13
834U53|1|1+ 4U53|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.333072014-10-22
844U53|1|5+ 4U53|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.333082014-10-22
856SV4|1|YQ+ 6SV4|1|YSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.332842020-03-04
866SV4|1|BQ+ 6SV4|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.332842020-03-04
876SV4|1|ZQ+ 6SV4|1|ZSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.332842020-03-04
885APO|1|5+ 5APO|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1Electron microscopy3.4132702015-12-16
896QTZ|1|A+ 6QTZ|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.533022019-06-26
906N8J|1|1+ 6N8J|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunitElectron microscopy3.532052019-03-13
914U56|1|1+ 4U56|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.4533072014-10-22
924U56|1|5+ 4U56|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.4533082014-10-22
936ELZ|1|1+ 6ELZ|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmesElectron microscopy3.326152017-12-27

Release history

Release3.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.136
Date2020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-22

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_90506.34NR_3.5_90506.333.123(91) 3JCT|1|1+3JCT|1|2, 4U3M|1|1+4U3M|1|4, 4U3M|1|5+4U3M|1|8, 4U3N|1|1+4U3N|1|4, 4U3N|1|5+4U3N|1|8, 4U3U|1|1+4U3U|1|4, 4U3U|1|5+4U3U|1|8, 4U4N|1|1+4U4N|1|4, 4U4N|1|5+4U4N|1|8, 4U4Q|1|1+4U4Q|1|4, 4U4Q|1|5+4U4Q|1|8, 4U4R|1|1+4U4R|1|4, 4U4R|1|5+4U4R|1|8, 4U4U|1|1+4U4U|1|4, 4U4U|1|5+4U4U|1|8, 4U4Y|1|1+4U4Y|1|4, 4U4Y|1|5+4U4Y|1|8, 4U4Z|1|1+4U4Z|1|4, 4U4Z|1|5+4U4Z|1|8, 4U50|1|1+4U50|1|4, 4U50|1|5+4U50|1|8, 4U51|1|1+4U51|1|4, 4U51|1|5+4U51|1|8, 4U52|1|1+4U52|1|4, 4U52|1|5+4U52|1|8, 4U53|1|1+4U53|1|4, 4U53|1|5+4U53|1|8, 4U55|1|1+4U55|1|4, 4U55|1|5+4U55|1|8, 4U56|1|1+4U56|1|4, 4U56|1|5+4U56|1|8, 4U6F|1|1+4U6F|1|4, 4U6F|1|5+4U6F|1|8, 4V88|1|A1+4V88|1|A4, 4V88|1|A5+4V88|1|A8, 5APO|1|5+5APO|1|8, 5DAT|1|1+5DAT|1|4, 5DAT|1|5+5DAT|1|8, 5DC3|1|1+5DC3|1|4, 5DC3|1|5+5DC3|1|8, 5DGE|1|1+5DGE|1|4, 5DGE|1|5+5DGE|1|8, 5DGF|1|1+5DGF|1|4, 5DGF|1|5+5DGF|1|8, 5DGV|1|1+5DGV|1|4, 5DGV|1|5+5DGV|1|8, 5H4P|1|1+5H4P|1|4, 5I4L|1|1+5I4L|1|4, 5I4L|1|5+5I4L|1|8, 5JUP|1|B+5JUP|1|C, 5LYB|1|1+5LYB|1|4, 5LYB|1|5+5LYB|1|8, 5M1J|1|14+5M1J|1|44, 5MEI|1|1+5MEI|1|4, 5MEI|1|AR+5MEI|1|AT, 5NDV|1|1+5NDV|1|4, 5NDV|1|5+5NDV|1|8, 5OBM|1|1+5OBM|1|4, 5OBM|1|5+5OBM|1|8, 5ON6|1|1+5ON6|1|4, 5ON6|1|AR+5ON6|1|AT, 5T62|1|A+5T62|1|C, 5TBW|1|1+5TBW|1|4, 5TBW|1|AR+5TBW|1|AT, 5TGA|1|1+5TGA|1|4, 5TGA|1|5+5TGA|1|8, 5TGM|1|1+5TGM|1|4, 5TGM|1|5+5TGM|1|8, 6ELZ|1|1+6ELZ|1|2, 6HD7|1|1+6HD7|1|4, 6HHQ|1|1+6HHQ|1|4, 6HHQ|1|AR+6HHQ|1|AT, 6N8J|1|1+6N8J|1|3, 6N8M|1|A+6N8M|1|C, 6N8O|1|A+6N8O|1|C, 6Q8Y|1|BQ+6Q8Y|1|BS, 6QIK|1|A+6QIK|1|y, 6QT0|1|A+6QT0|1|y, 6QTZ|1|A+6QTZ|1|y, 6R86|1|1+6R86|1|4, 6R87|1|1+6R87|1|4, 6RI5|1|A+6RI5|1|y, 6RZZ|1|A+6RZZ|1|y, 6S47|1|AA+6S47|1|AC, 6SNT|1|1+6SNT|1|3, 6SV4|1|BQ+6SV4|1|BS, 6SV4|1|YQ+6SV4|1|YS, 6SV4|1|ZQ+6SV4|1|ZS, 6T4Q|1|C1+6T4Q|1|C3, 6T7I|1|C1+6T7I|1|C3, 6T7T|1|C1+6T7T|1|C3(2) 6TB3|1|BQ+6TB3|1|BS, 6TNU|1|BQ+6TNU|1|BS(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_90506.34NR_3.5_90506.353.137(93) 3JCT|1|1+3JCT|1|2, 4U3M|1|1+4U3M|1|4, 4U3M|1|5+4U3M|1|8, 4U3N|1|1+4U3N|1|4, 4U3N|1|5+4U3N|1|8, 4U3U|1|1+4U3U|1|4, 4U3U|1|5+4U3U|1|8, 4U4N|1|1+4U4N|1|4, 4U4N|1|5+4U4N|1|8, 4U4Q|1|1+4U4Q|1|4, 4U4Q|1|5+4U4Q|1|8, 4U4R|1|1+4U4R|1|4, 4U4R|1|5+4U4R|1|8, 4U4U|1|1+4U4U|1|4, 4U4U|1|5+4U4U|1|8, 4U4Y|1|1+4U4Y|1|4, 4U4Y|1|5+4U4Y|1|8, 4U4Z|1|1+4U4Z|1|4, 4U4Z|1|5+4U4Z|1|8, 4U50|1|1+4U50|1|4, 4U50|1|5+4U50|1|8, 4U51|1|1+4U51|1|4, 4U51|1|5+4U51|1|8, 4U52|1|1+4U52|1|4, 4U52|1|5+4U52|1|8, 4U53|1|1+4U53|1|4, 4U53|1|5+4U53|1|8, 4U55|1|1+4U55|1|4, 4U55|1|5+4U55|1|8, 4U56|1|1+4U56|1|4, 4U56|1|5+4U56|1|8, 4U6F|1|1+4U6F|1|4, 4U6F|1|5+4U6F|1|8, 4V88|1|A1+4V88|1|A4, 4V88|1|A5+4V88|1|A8, 5APO|1|5+5APO|1|8, 5DAT|1|1+5DAT|1|4, 5DAT|1|5+5DAT|1|8, 5DC3|1|1+5DC3|1|4, 5DC3|1|5+5DC3|1|8, 5DGE|1|1+5DGE|1|4, 5DGE|1|5+5DGE|1|8, 5DGF|1|1+5DGF|1|4, 5DGF|1|5+5DGF|1|8, 5DGV|1|1+5DGV|1|4, 5DGV|1|5+5DGV|1|8, 5H4P|1|1+5H4P|1|4, 5I4L|1|1+5I4L|1|4, 5I4L|1|5+5I4L|1|8, 5JUP|1|B+5JUP|1|C, 5LYB|1|1+5LYB|1|4, 5LYB|1|5+5LYB|1|8, 5M1J|1|14+5M1J|1|44, 5MEI|1|1+5MEI|1|4, 5MEI|1|AR+5MEI|1|AT, 5NDV|1|1+5NDV|1|4, 5NDV|1|5+5NDV|1|8, 5OBM|1|1+5OBM|1|4, 5OBM|1|5+5OBM|1|8, 5ON6|1|1+5ON6|1|4, 5ON6|1|AR+5ON6|1|AT, 5T62|1|A+5T62|1|C, 5TBW|1|1+5TBW|1|4, 5TBW|1|AR+5TBW|1|AT, 5TGA|1|1+5TGA|1|4, 5TGA|1|5+5TGA|1|8, 5TGM|1|1+5TGM|1|4, 5TGM|1|5+5TGM|1|8, 6ELZ|1|1+6ELZ|1|2, 6HD7|1|1+6HD7|1|4, 6HHQ|1|1+6HHQ|1|4, 6HHQ|1|AR+6HHQ|1|AT, 6N8J|1|1+6N8J|1|3, 6N8M|1|A+6N8M|1|C, 6N8O|1|A+6N8O|1|C, 6Q8Y|1|BQ+6Q8Y|1|BS, 6QIK|1|A+6QIK|1|y, 6QT0|1|A+6QT0|1|y, 6QTZ|1|A+6QTZ|1|y, 6R86|1|1+6R86|1|4, 6R87|1|1+6R87|1|4, 6RI5|1|A+6RI5|1|y, 6RZZ|1|A+6RZZ|1|y, 6S47|1|AA+6S47|1|AC, 6SNT|1|1+6SNT|1|3, 6SV4|1|BQ+6SV4|1|BS, 6SV4|1|YQ+6SV4|1|YS, 6SV4|1|ZQ+6SV4|1|ZS, 6T4Q|1|C1+6T4Q|1|C3, 6T7I|1|C1+6T7I|1|C3, 6T7T|1|C1+6T7T|1|C3, 6TB3|1|BQ+6TB3|1|BS, 6TNU|1|BQ+6TNU|1|BS(0) (4) 6YLG|1|1+6YLG|1|2, 6YLH|1|1+6YLH|1|2, 6Z6J|1|C1+6Z6J|1|C3, 6Z6K|1|C1+6Z6K|1|C3

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
16N8M|1|A+ 6N8M|1|CCryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.53361
26QIK|1|A+ 6QIK|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.13302
36RZZ|1|A+ 6RZZ|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.23302
45APO|1|5+ 5APO|1|8Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.413270
56RI5|1|A+ 6RI5|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.33303
66QTZ|1|A+ 6QTZ|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.53302
76N8O|1|A+ 6N8O|1|CCryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.53359
85T62|1|A+ 5T62|1|CNmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexELECTRON MICROSCOPY3.13362
96HD7|1|1+ 6HD7|1|4Cryo-EM structure of the ribosome-NatA complexELECTRON MICROSCOPY3.43493
105H4P|1|1+ 5H4P|1|4Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1ELECTRON MICROSCOPY3.073249
116TNU|1|BQ+ 6TNU|1|BSYeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.13342
126Q8Y|1|BQ+ 6Q8Y|1|BSCryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexELECTRON MICROSCOPY3.13319
136T7I|1|C1+ 6T7I|1|C3Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.ELECTRON MICROSCOPY3.23342
146T7T|1|C1+ 6T7T|1|C3Structure of yeast 80S ribosome stalled on poly(A) tract.ELECTRON MICROSCOPY3.13342
156T4Q|1|C1+ 6T4Q|1|C3Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.63342
166SNT|1|1+ 6SNT|1|3Yeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.83342
176TB3|1|BQ+ 6TB3|1|BSyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.83381
186S47|1|AA+ 6S47|1|ACSaccharomyces cerevisiae 80S ribosome bound with ABCF protein New1ELECTRON MICROSCOPY3.283307
195DAT|1|1+ 5DAT|1|4Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.153307
205DGF|1|1+ 5DGF|1|4Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.33307
215DGV|1|1+ 5DGV|1|4Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.13306
225DGE|1|1+ 5DGE|1|4Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.453307
235DC3|1|1+ 5DC3|1|4Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253307
245TBW|1|1+ 5TBW|1|4Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
254U4Y|1|1+ 4U4Y|1|4Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
264U3M|1|1+ 4U3M|1|4Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
274U3U|1|1+ 4U3U|1|4Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93307
284U4R|1|1+ 4U4R|1|4Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83307
294V88|1|A1+ 4V88|1|A4The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33307
304U3N|1|1+ 4U3N|1|4Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
314U6F|1|1+ 4U6F|1|4Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
324U52|1|1+ 4U52|1|4Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
334U4Q|1|1+ 4U4Q|1|4Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
344U4U|1|1+ 4U4U|1|4Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
354U51|1|1+ 4U51|1|4Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
364U55|1|1+ 4U55|1|4Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
374U4Z|1|1+ 4U4Z|1|4Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
384U50|1|1+ 4U50|1|4Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
394U53|1|1+ 4U53|1|4Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33307
406HHQ|1|1+ 6HHQ|1|4Crystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
415ON6|1|1+ 5ON6|1|4Crystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.13307
425MEI|1|1+ 5MEI|1|4Crystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.53307
434U56|1|1+ 4U56|1|4Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453307
444U4N|1|1+ 4U4N|1|4Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
455I4L|1|1+ 5I4L|1|4Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
465LYB|1|1+ 5LYB|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.253307
475TGA|1|1+ 5TGA|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.33307
485TGM|1|1+ 5TGM|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.53307
495OBM|1|1+ 5OBM|1|4Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.43256
505M1J|1|14+ 5M1J|1|44Nonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.33453
515NDV|1|1+ 5NDV|1|4Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33235
526R87|1|1+ 6R87|1|4Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)ELECTRON MICROSCOPY3.43474
535NDV|1|5+ 5NDV|1|8Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33245
545DGF|1|5+ 5DGF|1|8Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.33327
555DAT|1|5+ 5DAT|1|8Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.153327
565DC3|1|5+ 5DC3|1|8Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253327
574U4Y|1|5+ 4U4Y|1|8Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
584V88|1|A5+ 4V88|1|A8The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33308
594U3U|1|5+ 4U3U|1|8Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93308
604U4R|1|5+ 4U4R|1|8Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83308
614U3N|1|5+ 4U3N|1|8Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
624U4Z|1|5+ 4U4Z|1|8Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13308
634U55|1|5+ 4U55|1|8Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
644U50|1|5+ 4U50|1|8Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
654U53|1|5+ 4U53|1|8Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33308
664U52|1|5+ 4U52|1|8Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33308
674U4Q|1|5+ 4U4Q|1|8Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33308
684U4U|1|5+ 4U4U|1|8Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33308
694U51|1|5+ 4U51|1|8Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
704U6F|1|5+ 4U6F|1|8Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13308
714U3M|1|5+ 4U3M|1|8Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33308
724U56|1|5+ 4U56|1|8Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453308
735LYB|1|5+ 5LYB|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.253308
745I4L|1|5+ 5I4L|1|8Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13308
754U4N|1|5+ 4U4N|1|8Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13308
765TGA|1|5+ 5TGA|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.33308
775TGM|1|5+ 5TGM|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.53308
785DGV|1|5+ 5DGV|1|8Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.13307
795DGE|1|5+ 5DGE|1|8Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.453308
805OBM|1|5+ 5OBM|1|8Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.43292
815TBW|1|AR+ 5TBW|1|ATCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
826HHQ|1|AR+ 6HHQ|1|ATCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13305
835ON6|1|AR+ 5ON6|1|ATCrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.13307
845MEI|1|AR+ 5MEI|1|ATCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.53307
856SV4|1|BQ+ 6SV4|1|BSThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.33284
866SV4|1|YQ+ 6SV4|1|YSThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.33284
876SV4|1|ZQ+ 6SV4|1|ZSThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.33284
886QT0|1|A+ 6QT0|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.43320
896R86|1|1+ 6R86|1|4Yeast Vms1-60S ribosomal subunit complex (post-state)ELECTRON MICROSCOPY3.43418
905JUP|1|B+ 5JUP|1|CSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.53467
916N8J|1|1+ 6N8J|1|3Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunitELECTRON MICROSCOPY3.53205
923JCT|1|1+ 3JCT|1|2Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.083216
936ELZ|1|1+ 6ELZ|1|2State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmesELECTRON MICROSCOPY3.32615

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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