RNA 3D Hub //

Equivalence class NR_3.5_90506.80 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18P9A|1|AR+ 8P9A|1|AT (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8 ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S yeast ribosome in complex with MethyllissoclimideX-ray diffraction2.932882024-11-27
28P9A|1|1+ 8P9A|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8 ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S yeast ribosome in complex with MethyllissoclimideX-ray diffraction2.933072024-11-27
38PNN|1|AR+ 8PNN|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S yeast ribosome in complex with BromolissoclimideX-ray diffraction2.932942025-05-28
45TBW|1|1+ 5TBW|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction333072017-07-26
58PNN|1|1+ 8PNN|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S yeast ribosome in complex with BromolissoclimideX-ray diffraction2.933072025-05-28
65TBW|1|AR+ 5TBW|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction333072017-07-26
74V88|1|A5+ 4V88|1|A8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction333082014-07-09
84V88|1|A1+ 4V88|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction333072014-07-09
98P4V|1|AR+ 8P4V|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S yeast ribosome in complex with HaterumaimideQX-ray diffraction3.1633052024-10-16
108P4V|1|1+ 8P4V|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S yeast ribosome in complex with HaterumaimideQX-ray diffraction3.1633072024-10-16
118P85|1|AR+ 8P85|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S yeast ribosome in complex with FluorolissoclimideX-ray diffraction2.933052025-06-25
128P85|1|1+ 8P85|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S yeast ribosome in complex with FluorolissoclimideX-ray diffraction2.932922025-06-25
137OSA|1|25S+ 7OSA|1|58SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction333382021-12-08
145I4L|1|5+ 5I4L|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.133082016-06-22
155I4L|1|1+ 5I4L|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.133072016-06-22
165MEI|1|AR+ 5MEI|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Agelastatin A bound to the 80S ribosomeX-ray diffraction3.533072017-06-28
175MEI|1|1+ 5MEI|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Agelastatin A bound to the 80S ribosomeX-ray diffraction3.533072017-06-28
186HHQ|1|AR+ 6HHQ|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of compound C45 bound to the yeast 80S ribosomeX-ray diffraction3.133052019-02-20
196HHQ|1|1+ 6HHQ|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of compound C45 bound to the yeast 80S ribosomeX-ray diffraction3.133072019-02-20
205OBM|1|5+ 5OBM|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-ray diffraction3.432922017-12-13
215OBM|1|1+ 5OBM|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-ray diffraction3.432562017-12-13
225LYB|1|5+ 5LYB|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmnSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.2533082016-11-23
235NDV|1|1+ 5NDV|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-ray diffraction3.332352017-12-13
245LYB|1|1+ 5LYB|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmnSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.2533072016-11-23
255ON6|1|1+ 5ON6|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of haemanthamine bound to the 80S ribosomeX-ray diffraction3.133072018-02-28
267OSM|1|25S+ 7OSM|1|58SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction333202021-12-08
275ON6|1|AR+ 5ON6|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of haemanthamine bound to the 80S ribosomeX-ray diffraction3.133072018-02-28
285NDV|1|5+ 5NDV|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-ray diffraction3.332452017-12-13
295FCJ|1|5+ 5FCJ|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.133082016-05-11
305FCJ|1|1+ 5FCJ|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.133072016-05-11
315TGM|1|1+ 5TGM|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-PheSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.533072017-01-18
325TGM|1|5+ 5TGM|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-PheSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.533082017-01-18
335DAT|1|5+ 5DAT|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.1533272016-08-31
345DGV|1|5+ 5DGV|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.133072016-12-14
355DAT|1|1+ 5DAT|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.1533072016-08-31
365DGV|1|1+ 5DGV|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.133062016-12-14
375DGE|1|5+ 5DGE|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.4533082017-01-25
385TGA|1|5+ 5TGA|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.333082016-11-23
395DGF|1|5+ 5DGF|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.333272016-12-14
405TGA|1|1+ 5TGA|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.333072016-11-23
415DGF|1|1+ 5DGF|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.333072016-12-14
425DGE|1|1+ 5DGE|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.4533072017-01-25
435FCI|1|5+ 5FCI|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.433082016-05-11
445DC3|1|5+ 5DC3|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.2533272016-06-01
455FCI|1|1+ 5FCI|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.433072016-05-11
465DC3|1|1+ 5DC3|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.2533072016-06-01
478CCS|1|AA+ 8CCS|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complexElectron microscopy1.9733482023-09-20
488CDR|1|AA+ 8CDR|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.0433552023-09-20
498CEH|1|AA+ 8CEH|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.0533552023-09-20
508EVT|1|A1+ 8EVT|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite mapElectron microscopy2.233502023-09-06
518T2Y|1|A1+ 8T2Y|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PREElectron microscopy2.233172024-12-11
528CGN|1|AA+ 8CGN|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Non-rotated 80S S. cerevisiae ribosome with ligandsElectron microscopy2.2833552023-09-20
538P8N|1|A+ 8P8N|1|LDLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Mouse RPL39 integrated into the yeast 60S ribosomal subunitElectron microscopy2.1532002024-06-12
548PFR|1|A+ 8PFR|1|LDLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Mouse RPL39L integrated into the yeast 60S ribosomal subunitElectron microscopy2.1531962024-06-26
557ZW0|1|LA+ 7ZW0|1|LDLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA (RDN25-1), 5.8S ribosomal RNA (RDN58-1)Saccharomyces cerevisiae W303EukaryaRF02543 + RF00002FAP-80S Complex - Rotated stateElectron microscopy2.433752022-10-05
568AGX|1|f+ 8AGX|1|iLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast RQC complex in state with the RING domain of Ltn1 in the IN positionElectron microscopy2.433742023-03-08
578EVP|1|A1+ 8EVP|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IElectron microscopy2.3833562023-09-06
587TOP|1|A25S+ 7TOP|1|A58SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20Electron microscopy2.433522022-05-25
598ZHC|1|LA+ 8ZHC|1|LCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA (3393-MER), 5.8S rRNA (158-MER)Saccharomyces cerevisiae S288CEukaryaRF02543 + RF00002pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNVElectron microscopy2.333422025-05-21
608T2X|1|A1+ 8T2X|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PREElectron microscopy2.4633742024-12-11
618P8U|1|A+ 8P8U|1|LDLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 60S ribosomal subunitElectron microscopy2.2332032024-06-12
628T2Z|1|A1+ 8T2Z|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POSTElectron microscopy2.433192024-12-11
638EWC|1|A1+ 8EWC|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIElectron microscopy2.4533562023-09-06
648BN3|1|1+ 8BN3|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S, ES7s delta, eIF5A, Stm1 containingElectron microscopy2.433012024-01-10
658CIV|1|AA+ 8CIV|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.4733552023-09-20
668AAF|1|f+ 8AAF|1|iLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast RQC complex in state GElectron microscopy2.533742023-03-08
678EUB|1|A1+ 8EUB|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IElectron microscopy2.5233562023-09-06
687ZUX|1|5+ 7ZUX|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Collided ribosome in a disome unit from S. cerevisiaeElectron microscopy2.533212023-02-22
698HFR|1|1e+ 8HFR|1|3nLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002NPC-trapped pre-60S particleElectron microscopy2.6434302023-04-12
708CG8|1|AA+ 8CG8|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.5733552023-09-20
717UOO|1|1+ 7UOO|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF00002Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateElectron microscopy2.3431492023-03-15
728AGZ|1|f+ 8AGZ|1|iLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast RQC complex in state with the RING domain of Ltn1 in the OUT positionElectron microscopy2.633742023-03-08
738AGT|1|f+ 8AGT|1|iLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast RQC complex in state FElectron microscopy2.633742023-03-08
748AGV|1|f+ 8AGV|1|iLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast RQC complex in state HElectron microscopy2.633742023-03-08
758AGW|1|f+ 8AGW|1|iLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast RQC complex in state DElectron microscopy2.633742023-03-08
767V08|1|1+ 7V08|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF00002Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainElectron microscopy2.3631442023-03-15
778EVS|1|A1+ 8EVS|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIElectron microscopy2.6233562023-09-06
787UQB|1|1+ 7UQB|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF00002Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4Electron microscopy2.4331492023-03-15
798AGU|1|f+ 8AGU|1|iLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast RQC complex in state EElectron microscopy2.733742023-03-08
807UQZ|1|1+ 7UQZ|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF00002Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainElectron microscopy2.4431442023-03-15
816T4Q|1|C1+ 6T4Q|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.Electron microscopy2.633422019-12-25
827TOO|1|A25S+ 7TOO|1|A58SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20Electron microscopy2.733522022-05-25
838CF5|1|AA+ 8CF5|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.7133482023-09-20
848EVQ|1|A1+ 8EVQ|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure IElectron microscopy2.7233562023-09-06
858CDL|1|AA+ 8CDL|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complexElectron microscopy2.7233482023-09-20
868ZHB|1|LA+ 8ZHB|1|LCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA (3393-MER), 5.8S rRNA (158-MER)Saccharomyces cerevisiae S288CEukaryaRF02543 + RF0000280S ribosome with A/A P/E tRNA and mRNA of WNVElectron microscopy2.633422025-05-21
877MPJ|1|A1+ 7MPJ|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Stm1 bound vacant 80S structure isolated from nop1-D243AElectron microscopy2.732952022-05-11
886WOO|1|5+ 6WOO|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPElectron microscopy2.934282020-09-23
898T3A|1|A1+ 8T3A|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2Electron microscopy2.8633722024-12-11
906TB3|1|BQ+ 6TB3|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexElectron microscopy2.833812020-04-22
918ZH3|1|LA+ 8ZH3|1|LCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA (3393-MER), 5.8S rRNA (158-MER)Saccharomyces cerevisiae S288CEukaryaRF02543 + RF0000280S ribosome with A/P-P/E tRNA and mRNA of WNVElectron microscopy2.733422025-05-21
928ZGR|1|LA+ 8ZGR|1|LCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA (3393-MER), 5.8S rRNA (158-MER)Saccharomyces cerevisiae S288CEukaryaRF02543 + RF0000280S ribosome with A/A tRNA and mRNA of WNVElectron microscopy2.733422025-05-21
938EWB|1|A1+ 8EWB|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIIElectron microscopy2.8733562023-09-06
948EVR|1|A1+ 8EVR|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIElectron microscopy2.8733562023-09-06
958P8M|1|A+ 8P8M|1|LDLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 60S ribosomal subunit, RPL39 deletionElectron microscopy2.6631932024-06-12
966SNT|1|1+ 6SNT|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome stalled on SDD1 mRNA.Electron microscopy2.833422020-03-04
979F9S|1|M1+ 9F9S|1|M2Large subunit ribosomal RNA + 5.8S ribosomal RNASaccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications, Saccharomyces cerevisiae S288C 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast SDD1 Disome with Mbf1Electron microscopy2.933482024-12-04
987AZY|1|E+ 7AZY|1|GLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Context-specific inhibition of eukaryotic translation by macrolide antibioticsElectron microscopy2.87733192021-05-19
998T30|1|A1+ 8T30|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotatedElectron microscopy2.8833172024-12-11
1008T3D|1|A1+ 8T3D|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIIElectron microscopy2.9533742024-12-11
1014U4R|1|1+ 4U4R|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.833072014-10-22
1024U4R|1|5+ 4U4R|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.833082014-10-22
1038ZGY|1|LA+ 8ZGY|1|LCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA (3393-MER), 5.8S rRNA (158-MER)Saccharomyces cerevisiae S288CEukaryaRF02543 + RF0000280S ribosome with P/E tRNA and mRNA of WNVElectron microscopy2.833422025-05-21
1048BIP|1|1+ 8BIP|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complexElectron microscopy3.134592023-02-08
1058K82|1|C1+ 8K82|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA23S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNAElectron microscopy333622024-07-10
1069F9S|1|L1+ 9F9S|1|L2Large subunit ribosomal RNA + 5.8S ribosomal RNASaccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), Saccharomyces cerevisiae S288C 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast SDD1 Disome with Mbf1Electron microscopy2.932742024-12-04
1078T3E|1|A1+ 8T3E|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IVElectron microscopy3.0433742024-12-11
1084U3U|1|5+ 4U3U|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.933082014-10-22
1094U3U|1|1+ 4U3U|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.933072014-10-22
1108T3B|1|A1+ 8T3B|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IElectron microscopy3.0833742024-12-11
1117UG6|1|1+ 7UG6|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922Electron microscopy2.932162022-12-21
1128T3F|1|A1+ 8T3F|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure VElectron microscopy3.0933742024-12-11
1137N8B|1|A1+ 7N8B|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cycloheximide bound vacant 80S structure isolated from cbf5-D95AElectron microscopy3.0533142022-05-11
1148CKU|1|AA+ 8CKU|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarinElectron microscopy3.1133482023-09-20
1157MPI|1|A1+ 7MPI|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Stm1 bound vacant 80S structure isolated from cbf5-D95AElectron microscopy3.0532952022-05-11
1167ZS5|1|1+ 7ZS5|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNAElectron microscopy3.234062023-02-22
1175T62|1|A+ 5T62|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S Ribosomal RNA, 5.8S Ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexElectron microscopy3.133622017-02-08
1184U3M|1|1+ 4U3M|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25s rRNA, 5.8s rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction333072014-10-22
1194U4Q|1|5+ 4U4Q|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction333082014-10-22
1204U3M|1|5+ 4U3M|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25s rRNA, 5.8s rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction333082014-10-22
1219F58|1|a+ 9F58|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Gcn2 dimer bound to the 60S ribosomal subunitElectron microscopy3.132922025-03-26
1224U4U|1|1+ 4U4U|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction333072014-10-22
1234U4Q|1|1+ 4U4Q|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction333072014-10-22
1246YLG|1|1+ 6YLG|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)Electron microscopy331932020-07-29
1259OFV|1|f+ 9OFV|1|iLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complexElectron microscopy3.1633742025-06-11
1264U4U|1|5+ 4U4U|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction333082014-10-22
1274U52|1|5+ 4U52|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction333082014-10-22
1284U52|1|1+ 4U52|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction333072014-10-22
1297RR5|1|C1+ 7RR5|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of ribosomal complex bound with Rbg1/Tma46Electron microscopy3.2333792021-11-10
1308K2D|1|C1+ 8K2D|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA23S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5AElectron microscopy3.233452024-07-10
1318Z70|1|A+ 8Z70|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decodingElectron microscopy3.233452024-12-11
1326Q8Y|1|BQ+ 6Q8Y|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexElectron microscopy3.133192019-03-13
1338UT0|1|A+ 8UT0|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNAElectron microscopy3.2233422024-11-06
1347OHQ|1|1+ 7OHQ|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Nog1-TAP associated immature ribosomal particle population C from S. cerevisiaeElectron microscopy3.132112021-11-03
1355M1J|1|14+ 5M1J|1|44Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Nonstop ribosomal complex bound with Dom34 and Hbs1Electron microscopy3.334532017-01-18
1366T7T|1|C1+ 6T7T|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of yeast 80S ribosome stalled on poly(A) tract.Electron microscopy3.133422019-12-25
1377B7D|1|LA+ 7B7D|1|LCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsElectron microscopy3.333812021-03-10
1384U6F|1|1+ 4U6F|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.133072014-10-22
1394U6F|1|5+ 4U6F|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.133082014-10-22
1406QIK|1|A+ 6QIK|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.133022019-06-26
1416YLH|1|1+ 6YLH|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Rix1-Rea1 pre-60S particle - full composite structureElectron microscopy3.131932020-07-29
1426TNU|1|BQ+ 6TNU|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.Electron microscopy3.133422020-04-22
1436XIR|1|1+ 6XIR|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA35S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressElectron microscopy3.232712020-08-26
1444U4N|1|5+ 4U4N|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.133082014-10-22
1457U0H|1|1+ 7U0H|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF00002State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall modelElectron microscopy2.7628802022-12-14
1468UTI|1|A+ 8UTI|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Eukaryotic 80S ribosome with Reh1 and A/P site tRNAElectron microscopy3.1332022024-11-06
1474U4Z|1|5+ 4U4Z|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.133082014-10-22
1484U4N|1|1+ 4U4N|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.133072014-10-22
1494U4Z|1|1+ 4U4Z|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.133072014-10-22
1506RZZ|1|A+ 6RZZ|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.233022019-06-26
1516T7I|1|C1+ 6T7I|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.Electron microscopy3.233422019-12-25
1524U3N|1|5+ 4U3N|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
1537BTB|1|1+ 7BTB|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARDN25-1 rRNA, RDN5.8-1 rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)Electron microscopy3.2232162020-10-28
1544U4Y|1|5+ 4U4Y|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
1554U3N|1|1+ 4U3N|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
1567BT6|1|1+ 7BT6|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARDN25-1 rRNA, RDN5.8-1 rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)Electron microscopy3.1231202020-10-28
1574U55|1|5+ 4U55|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
1586R87|1|1+ 6R87|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)Electron microscopy3.434742019-06-26
1596S47|1|AA+ 6S47|1|ACLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1Electron microscopy3.2833072019-07-24
1603JCT|1|1+ 3JCT|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARDN25-1 rRNA, RDN58-1 rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-em structure of eukaryotic pre-60S ribosomal subunitsElectron microscopy3.0832162016-06-01
1614U4Y|1|1+ 4U4Y|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
1624U51|1|5+ 4U51|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
1638XU8|1|A+ 8XU8|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferationElectron microscopy3.433472024-12-11
1644U51|1|1+ 4U51|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
1654U55|1|1+ 4U55|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
1664U50|1|5+ 4U50|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
1674U50|1|1+ 4U50|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
1685H4P|1|1+ 5H4P|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1Electron microscopy3.0732492017-01-25
1696R86|1|1+ 6R86|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast Vms1-60S ribosomal subunit complex (post-state)Electron microscopy3.434182019-07-31
1706M62|1|1+ 6M62|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARDN25-1 rRNA, RDN58-1 rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.Electron microscopy3.231302020-08-26
1718V87|1|1+ 8V87|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF0000260S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)Electron microscopy2.6626442024-05-01
1725JUP|1|B+ 5JUP|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)Electron microscopy3.534672016-10-05
1736HD7|1|1+ 6HD7|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of the ribosome-NatA complexElectron microscopy3.434932018-12-19
1746Z6K|1|C1+ 6Z6K|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesElectron microscopy3.432842020-07-29
1756Z6J|1|C1+ 6Z6J|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionElectron microscopy3.432842020-07-29
1767ZPQ|1|5+ 7ZPQ|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)Electron microscopy3.4733422023-02-22
1776RI5|1|A+ 6RI5|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S RNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.333032019-06-26
1786QT0|1|A+ 6QT0|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.433202019-06-26
1796N8M|1|A+ 6N8M|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA5.8S RNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunitElectron microscopy3.533612019-03-13
1806N8O|1|A+ 6N8O|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunitElectron microscopy3.533592019-03-13
1814U53|1|1+ 4U53|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.333072014-10-22
1827OF1|1|1+ 7OF1|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Nog1-TAP associated immature ribosomal particle population A from S. cerevisiaeElectron microscopy3.129452021-11-03
1834U53|1|5+ 4U53|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.333082014-10-22
1846SV4|1|YQ+ 6SV4|1|YSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.332842020-03-04
1857OH3|1|1+ 7OH3|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Nog1-TAP associated immature ribosomal particle population B from S. cerevisiaeElectron microscopy3.431682021-11-03
1866SV4|1|BQ+ 6SV4|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.332842020-03-04
1876SV4|1|ZQ+ 6SV4|1|ZSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.332842020-03-04
1887NAC|1|1+ 7NAC|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF00002State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite modelElectron microscopy3.0428192022-11-09
1895APO|1|5+ 5APO|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1Electron microscopy3.4132702015-12-16
1906QTZ|1|A+ 6QTZ|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.533022019-06-26
1917R7A|1|1+ 7R7A|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF00002State E1 nucleolar 60S ribosome biogenesis intermediate - Composite modelElectron microscopy3.0427292022-11-09
1926N8J|1|1+ 6N8J|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunitElectron microscopy3.532052019-03-13
1934U56|1|1+ 4U56|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.4533072014-10-22
1944U56|1|5+ 4U56|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.4533082014-10-22
1958V83|1|1+ 8V83|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNASaccharomyces cerevisiae S288C 25S ribosomal RNA, Saccharomyces cerevisiae S288C 5.8S ribosomal RNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF0000260S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)Electron microscopy2.5321652024-05-01
1968V84|1|1+ 8V84|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNASaccharomyces cerevisiae 25S ribosomal RNA, Saccharomyces cerevisiae 5.8S ribosomal RNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF0000260S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)Electron microscopy2.721202024-05-01
1976ELZ|1|1+ 6ELZ|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmesElectron microscopy3.326152017-12-27
1987OHX|1|1+ 7OHX|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population AElectron microscopy3.317092021-11-03
1996EM3|1|1Large subunit ribosomal RNA25S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesElectron microscopy3.212502017-12-27
2007OHW|1|1+ 7OHW|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population BElectron microscopy3.517882021-11-03

Release history

Release3.393
Date2025-06-25

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
16EM3|1|1State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY3.21250
26WOO|1|5+ 6WOO|1|8CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.93428
38T2Z|1|A1+ 8T2Z|1|A4Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POSTELECTRON MICROSCOPY2.43319
48T3E|1|A1+ 8T3E|1|A4Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IVELECTRON MICROSCOPY3.043374
58T3F|1|A1+ 8T3F|1|A4Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure VELECTRON MICROSCOPY3.093374
65JUP|1|B+ 5JUP|1|CSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.53467
78T3D|1|A1+ 8T3D|1|A4Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIIELECTRON MICROSCOPY2.953374
88T3B|1|A1+ 8T3B|1|A4Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IELECTRON MICROSCOPY3.083374
98EWB|1|A1+ 8EWB|1|A4Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIIELECTRON MICROSCOPY2.873356
108EVQ|1|A1+ 8EVQ|1|A4Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure IELECTRON MICROSCOPY2.723356
118EUB|1|A1+ 8EUB|1|A4Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IELECTRON MICROSCOPY2.523356
128EVR|1|A1+ 8EVR|1|A4Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIELECTRON MICROSCOPY2.873356
138EVS|1|A1+ 8EVS|1|A4Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIELECTRON MICROSCOPY2.623356
148EWC|1|A1+ 8EWC|1|A4Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIELECTRON MICROSCOPY2.453356
158EVP|1|A1+ 8EVP|1|A4Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IELECTRON MICROSCOPY2.383356
166R87|1|1+ 6R87|1|4Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)ELECTRON MICROSCOPY3.43474
179F58|1|a+ 9F58|1|4Gcn2 dimer bound to the 60S ribosomal subunitELECTRON MICROSCOPY3.13292
185M1J|1|14+ 5M1J|1|44Nonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.33453
198AGW|1|f+ 8AGW|1|iYeast RQC complex in state DELECTRON MICROSCOPY2.63374
209OFV|1|f+ 9OFV|1|iConsensus reconstruction of the eukaryotic Ribosome-associated Quality Control complexELECTRON MICROSCOPY3.163374
217ZS5|1|1+ 7ZS5|1|4Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNAELECTRON MICROSCOPY3.23406
226R86|1|1+ 6R86|1|4Yeast Vms1-60S ribosomal subunit complex (post-state)ELECTRON MICROSCOPY3.43418
236QT0|1|A+ 6QT0|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.43320
245NDV|1|5+ 5NDV|1|8Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33245
255TBW|1|AR+ 5TBW|1|ATCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
265ON6|1|AR+ 5ON6|1|ATCrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.13307
275MEI|1|AR+ 5MEI|1|ATCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.53307
286HHQ|1|AR+ 6HHQ|1|ATCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13305
298P9A|1|AR+ 8P9A|1|AT80S yeast ribosome in complex with MethyllissoclimideX-RAY DIFFRACTION2.93288
308P85|1|AR+ 8P85|1|AT80S yeast ribosome in complex with FluorolissoclimideX-RAY DIFFRACTION2.93305
318P4V|1|AR+ 8P4V|1|AT80S yeast ribosome in complex with HaterumaimideQX-RAY DIFFRACTION3.163305
328PNN|1|AR+ 8PNN|1|AT80S yeast ribosome in complex with BromolissoclimideX-RAY DIFFRACTION2.93294
335FCJ|1|5+ 5FCJ|1|8Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.13308
345FCI|1|5+ 5FCI|1|8Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.43308
354U56|1|5+ 4U56|1|8Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453308
365TGA|1|5+ 5TGA|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.33308
375LYB|1|5+ 5LYB|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.253308
385I4L|1|5+ 5I4L|1|8Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13308
394U4N|1|5+ 4U4N|1|8Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13308
404U4Z|1|5+ 4U4Z|1|8Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13308
414U55|1|5+ 4U55|1|8Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
424U3N|1|5+ 4U3N|1|8Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
434V88|1|A5+ 4V88|1|A8The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33308
444U4R|1|5+ 4U4R|1|8Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83308
454U3U|1|5+ 4U3U|1|8Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93308
464U4Y|1|5+ 4U4Y|1|8Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
474U3M|1|5+ 4U3M|1|8Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33308
484U4U|1|5+ 4U4U|1|8Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33308
494U4Q|1|5+ 4U4Q|1|8Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33308
504U52|1|5+ 4U52|1|8Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33308
514U50|1|5+ 4U50|1|8Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
524U53|1|5+ 4U53|1|8Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33308
534U51|1|5+ 4U51|1|8Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
544U6F|1|5+ 4U6F|1|8Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13308
555DGE|1|5+ 5DGE|1|8Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.453308
565DGV|1|5+ 5DGV|1|8Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.13307
575TGM|1|5+ 5TGM|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.53308
585DGF|1|5+ 5DGF|1|8Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.33327
595DAT|1|5+ 5DAT|1|8Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.153327
605DC3|1|5+ 5DC3|1|8Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253327
615OBM|1|5+ 5OBM|1|8Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.43292
626SV4|1|ZQ+ 6SV4|1|ZSThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.33284
636SV4|1|YQ+ 6SV4|1|YSThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.33284
646SV4|1|BQ+ 6SV4|1|BSThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.33284
658ZHC|1|LA+ 8ZHC|1|LCpre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNVELECTRON MICROSCOPY2.33342
668ZGR|1|LA+ 8ZGR|1|LC80S ribosome with A/A tRNA and mRNA of WNVELECTRON MICROSCOPY2.73342
678ZHB|1|LA+ 8ZHB|1|LC80S ribosome with A/A P/E tRNA and mRNA of WNVELECTRON MICROSCOPY2.63342
688ZH3|1|LA+ 8ZH3|1|LC80S ribosome with A/P-P/E tRNA and mRNA of WNVELECTRON MICROSCOPY2.73342
697MPJ|1|A1+ 7MPJ|1|A4Stm1 bound vacant 80S structure isolated from nop1-D243AELECTRON MICROSCOPY2.73295
707MPI|1|A1+ 7MPI|1|A4Stm1 bound vacant 80S structure isolated from cbf5-D95AELECTRON MICROSCOPY3.053295
717N8B|1|A1+ 7N8B|1|A4Cycloheximide bound vacant 80S structure isolated from cbf5-D95AELECTRON MICROSCOPY3.053314
728EVT|1|A1+ 8EVT|1|A4Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite mapELECTRON MICROSCOPY2.23350
737B7D|1|LA+ 7B7D|1|LCYeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsELECTRON MICROSCOPY3.33381
748BN3|1|1+ 8BN3|1|4Yeast 80S, ES7s delta, eIF5A, Stm1 containingELECTRON MICROSCOPY2.43301
756TNU|1|BQ+ 6TNU|1|BSYeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.13342
768UT0|1|A+ 8UT0|1|CEukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNAELECTRON MICROSCOPY3.223342
778UTI|1|A+ 8UTI|1|CEukaryotic 80S ribosome with Reh1 and A/P site tRNAELECTRON MICROSCOPY3.133202
788T3A|1|A1+ 8T3A|1|A4Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2ELECTRON MICROSCOPY2.863372
798CGN|1|AA+ 8CGN|1|CCNon-rotated 80S S. cerevisiae ribosome with ligandsELECTRON MICROSCOPY2.283355
808CIV|1|AA+ 8CIV|1|CCTranslocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.473355
818CEH|1|AA+ 8CEH|1|CCTranslocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.053355
828CDR|1|AA+ 8CDR|1|CCTranslocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.043355
838CG8|1|AA+ 8CG8|1|CCTranslocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.573355
848Z70|1|A+ 8Z70|1|CState 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decodingELECTRON MICROSCOPY3.23345
857OSM|1|25S+ 7OSM|1|58SIntermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION33320
867OSA|1|25S+ 7OSA|1|58SPre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION33338
878CKU|1|AA+ 8CKU|1|CCTranslocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarinELECTRON MICROSCOPY3.113348
888CF5|1|AA+ 8CF5|1|CCTranslocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.713348
898CCS|1|AA+ 8CCS|1|CC80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complexELECTRON MICROSCOPY1.973348
908CDL|1|AA+ 8CDL|1|CC80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complexELECTRON MICROSCOPY2.723348
919F9S|1|M1+ 9F9S|1|M2Yeast SDD1 Disome with Mbf1ELECTRON MICROSCOPY2.93348
928XU8|1|A+ 8XU8|1|CState 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferationELECTRON MICROSCOPY3.43347
936Z6J|1|C1+ 6Z6J|1|C3Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionELECTRON MICROSCOPY3.43284
946Z6K|1|C1+ 6Z6K|1|C3Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesELECTRON MICROSCOPY3.43284
958K2D|1|C1+ 8K2D|1|C3Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5AELECTRON MICROSCOPY3.23345
968T2X|1|A1+ 8T2X|1|A4Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PREELECTRON MICROSCOPY2.463374
978T2Y|1|A1+ 8T2Y|1|A4Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PREELECTRON MICROSCOPY2.23317
988T30|1|A1+ 8T30|1|A4Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotatedELECTRON MICROSCOPY2.883317
996HD7|1|1+ 6HD7|1|4Cryo-EM structure of the ribosome-NatA complexELECTRON MICROSCOPY3.43493
1008ZGY|1|LA+ 8ZGY|1|LC80S ribosome with P/E tRNA and mRNA of WNVELECTRON MICROSCOPY2.83342
1017ZW0|1|LA+ 7ZW0|1|LDFAP-80S Complex - Rotated stateELECTRON MICROSCOPY2.43375
1025H4P|1|1+ 5H4P|1|4Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1ELECTRON MICROSCOPY3.073249
1037TOP|1|A25S+ 7TOP|1|A58SYeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20ELECTRON MICROSCOPY2.43352
1047TOO|1|A25S+ 7TOO|1|A58SYeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20ELECTRON MICROSCOPY2.73352
1058P8M|1|A+ 8P8M|1|LDYeast 60S ribosomal subunit, RPL39 deletionELECTRON MICROSCOPY2.663193
1068PFR|1|A+ 8PFR|1|LDMouse RPL39L integrated into the yeast 60S ribosomal subunitELECTRON MICROSCOPY2.153196
1078P8N|1|A+ 8P8N|1|LDMouse RPL39 integrated into the yeast 60S ribosomal subunitELECTRON MICROSCOPY2.153200
1088P8U|1|A+ 8P8U|1|LDYeast 60S ribosomal subunitELECTRON MICROSCOPY2.233203
1098AAF|1|f+ 8AAF|1|iYeast RQC complex in state GELECTRON MICROSCOPY2.53374
1108AGT|1|f+ 8AGT|1|iYeast RQC complex in state FELECTRON MICROSCOPY2.63374
1118AGZ|1|f+ 8AGZ|1|iYeast RQC complex in state with the RING domain of Ltn1 in the OUT positionELECTRON MICROSCOPY2.63374
1128AGX|1|f+ 8AGX|1|iYeast RQC complex in state with the RING domain of Ltn1 in the IN positionELECTRON MICROSCOPY2.43374
1138AGU|1|f+ 8AGU|1|iYeast RQC complex in state EELECTRON MICROSCOPY2.73374
1148AGV|1|f+ 8AGV|1|iYeast RQC complex in state HELECTRON MICROSCOPY2.63374
1156Q8Y|1|BQ+ 6Q8Y|1|BSCryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexELECTRON MICROSCOPY3.13319
1167AZY|1|E+ 7AZY|1|GContext-specific inhibition of eukaryotic translation by macrolide antibioticsELECTRON MICROSCOPY2.8773319
1175NDV|1|1+ 5NDV|1|4Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33235
1185OBM|1|1+ 5OBM|1|4Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.43256
1198PNN|1|1+ 8PNN|1|480S yeast ribosome in complex with BromolissoclimideX-RAY DIFFRACTION2.93307
1208P4V|1|1+ 8P4V|1|480S yeast ribosome in complex with HaterumaimideQX-RAY DIFFRACTION3.163307
1215FCI|1|1+ 5FCI|1|4Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.43307
1225TGM|1|1+ 5TGM|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.53307
1235TGA|1|1+ 5TGA|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.33307
1245FCJ|1|1+ 5FCJ|1|4Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.13307
1256HHQ|1|1+ 6HHQ|1|4Crystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
1268P9A|1|1+ 8P9A|1|480S yeast ribosome in complex with MethyllissoclimideX-RAY DIFFRACTION2.93307
1278P85|1|1+ 8P85|1|480S yeast ribosome in complex with FluorolissoclimideX-RAY DIFFRACTION2.93292
1285MEI|1|1+ 5MEI|1|4Crystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.53307
1295ON6|1|1+ 5ON6|1|4Crystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.13307
1304U56|1|1+ 4U56|1|4Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453307
1314U52|1|1+ 4U52|1|4Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
1324U50|1|1+ 4U50|1|4Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
1334U53|1|1+ 4U53|1|4Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33307
1344U4Z|1|1+ 4U4Z|1|4Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
1354U55|1|1+ 4U55|1|4Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
1364U4N|1|1+ 4U4N|1|4Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
1375I4L|1|1+ 5I4L|1|4Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
1384U51|1|1+ 4U51|1|4Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
1394U4U|1|1+ 4U4U|1|4Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
1404U4Q|1|1+ 4U4Q|1|4Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
1414U6F|1|1+ 4U6F|1|4Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
1424U3N|1|1+ 4U3N|1|4Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
1435LYB|1|1+ 5LYB|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.253307
1444V88|1|A1+ 4V88|1|A4The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33307
1454U4R|1|1+ 4U4R|1|4Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83307
1464U3U|1|1+ 4U3U|1|4Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93307
1474U3M|1|1+ 4U3M|1|4Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
1484U4Y|1|1+ 4U4Y|1|4Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
1495TBW|1|1+ 5TBW|1|4Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
1505DC3|1|1+ 5DC3|1|4Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253307
1515DGE|1|1+ 5DGE|1|4Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.453307
1525DGV|1|1+ 5DGV|1|4Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.13306
1535DGF|1|1+ 5DGF|1|4Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.33307
1545DAT|1|1+ 5DAT|1|4Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.153307
1556S47|1|AA+ 6S47|1|ACSaccharomyces cerevisiae 80S ribosome bound with ABCF protein New1ELECTRON MICROSCOPY3.283307
1568K82|1|C1+ 8K82|1|C3Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNAELECTRON MICROSCOPY33362
1576TB3|1|BQ+ 6TB3|1|BSyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.83381
1586SNT|1|1+ 6SNT|1|3Yeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.83342
1596T4Q|1|C1+ 6T4Q|1|C3Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.63342
1606T7T|1|C1+ 6T7T|1|C3Structure of yeast 80S ribosome stalled on poly(A) tract.ELECTRON MICROSCOPY3.13342
1616T7I|1|C1+ 6T7I|1|C3Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.ELECTRON MICROSCOPY3.23342
1628BIP|1|1+ 8BIP|1|C3Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complexELECTRON MICROSCOPY3.13459
1637ZPQ|1|5+ 7ZPQ|1|3Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)ELECTRON MICROSCOPY3.473342
1649F9S|1|L1+ 9F9S|1|L2Yeast SDD1 Disome with Mbf1ELECTRON MICROSCOPY2.93274
1657ZUX|1|5+ 7ZUX|1|3Collided ribosome in a disome unit from S. cerevisiaeELECTRON MICROSCOPY2.53321
1667RR5|1|C1+ 7RR5|1|C3Structure of ribosomal complex bound with Rbg1/Tma46ELECTRON MICROSCOPY3.233379
1675T62|1|A+ 5T62|1|CNmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexELECTRON MICROSCOPY3.13362
1686XIR|1|1+ 6XIR|1|4Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.23271
1696N8O|1|A+ 6N8O|1|CCryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.53359
1706QTZ|1|A+ 6QTZ|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.53302
1716RI5|1|A+ 6RI5|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.33303
1725APO|1|5+ 5APO|1|8Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.413270
1736RZZ|1|A+ 6RZZ|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.23302
1746QIK|1|A+ 6QIK|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.13302
1756N8M|1|A+ 6N8M|1|CCryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.53361
1768HFR|1|1e+ 8HFR|1|3nNPC-trapped pre-60S particleELECTRON MICROSCOPY2.643430
1776N8J|1|1+ 6N8J|1|3Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunitELECTRON MICROSCOPY3.53205
1787OF1|1|1+ 7OF1|1|2Nog1-TAP associated immature ribosomal particle population A from S. cerevisiaeELECTRON MICROSCOPY3.12945
1796YLG|1|1+ 6YLG|1|2Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)ELECTRON MICROSCOPY33193
1806YLH|1|1+ 6YLH|1|2Rix1-Rea1 pre-60S particle - full composite structureELECTRON MICROSCOPY3.13193
1817U0H|1|1+ 7U0H|1|2State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall modelELECTRON MICROSCOPY2.762880
1827UQB|1|1+ 7UQB|1|2Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4ELECTRON MICROSCOPY2.433149
1837V08|1|1+ 7V08|1|2Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainELECTRON MICROSCOPY2.363144
1847UQZ|1|1+ 7UQZ|1|2Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainELECTRON MICROSCOPY2.443144
1857UOO|1|1+ 7UOO|1|2Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateELECTRON MICROSCOPY2.343149
1867BTB|1|1+ 7BTB|1|2Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)ELECTRON MICROSCOPY3.223216
1873JCT|1|1+ 3JCT|1|2Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.083216
1887OH3|1|1+ 7OH3|1|2Nog1-TAP associated immature ribosomal particle population B from S. cerevisiaeELECTRON MICROSCOPY3.43168
1897OHQ|1|1+ 7OHQ|1|2Nog1-TAP associated immature ribosomal particle population C from S. cerevisiaeELECTRON MICROSCOPY3.13211
1907UG6|1|1+ 7UG6|1|2Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922ELECTRON MICROSCOPY2.93216
1916M62|1|1+ 6M62|1|2Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.ELECTRON MICROSCOPY3.23130
1927BT6|1|1+ 7BT6|1|2Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)ELECTRON MICROSCOPY3.123120
1937OHX|1|1+ 7OHX|1|2Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population AELECTRON MICROSCOPY3.31709
1948V83|1|1+ 8V83|1|260S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)ELECTRON MICROSCOPY2.532165
1958V84|1|1+ 8V84|1|260S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)ELECTRON MICROSCOPY2.72120
1967OHW|1|1+ 7OHW|1|2Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population BELECTRON MICROSCOPY3.51788
1978V87|1|1+ 8V87|1|260S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)ELECTRON MICROSCOPY2.662644
1987R7A|1|1+ 7R7A|1|2State E1 nucleolar 60S ribosome biogenesis intermediate - Composite modelELECTRON MICROSCOPY3.042729
1997NAC|1|1+ 7NAC|1|2State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite modelELECTRON MICROSCOPY3.042819
2006ELZ|1|1+ 6ELZ|1|2State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmesELECTRON MICROSCOPY3.32615

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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