Equivalence class NR_3.5_90840.6 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8G9Z|1|E (rep) | Selenocysteine transfer RNA | RNA (90-MER) | Homo sapiens | Eukarya | RF01852 | High-resolution crystal structure of the human selenomethionine-derived SepSecS-tRNASec complex | X-ray diffraction | 2.07 | 2023-04-05 |
| 2 | 4ZDO|1|E | Selenocysteine transfer RNA | selenocysteine tRNA | Homo sapiens | Eukarya | RF01852 | The crystal structure of T325S mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec) | X-ray diffraction | 2.65 | 2016-04-20 |
| 3 | 3A3A|1|A | Selenocysteine transfer RNA | selenocysteine tRNA | Homo sapiens | Eukarya | RF01852 | Crystal structure of human selenocystine tRNA | X-ray diffraction | 3.1 | 2009-08-11 |
| 4 | 4ZDP|1|E | Selenocysteine transfer RNA | selenocysteine tRNA | Homo sapiens | Eukarya | RF01852 | The crystal structure of Y334C mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec) | X-ray diffraction | 2.7 | 2016-04-20 |
| 5 | 4RQF|1|C | Selenocysteine transfer RNA | selenocysteine tRNA | Homo sapiens | Eukarya | RF01852 | human Seryl-tRNA synthetase dimer complexed with one molecule of tRNAsec | X-ray diffraction | 3.5 | 2015-11-04 |
| 6 | 3HL2|1|E | Selenocysteine transfer RNA | tRNASec | Homo sapiens | Eukarya | RF01852 | The crystal structure of the human SepSecS-tRNASec complex | X-ray diffraction | 2.81 | 2009-10-06 |
| 7 | 7ZJW|1|F | Selenocysteine transfer RNA | human Ser-tRNA-Sec | Homo sapiens | Eukarya | RF01852 | Rabbit 80S ribosome as it decodes the Sec-UGA codon | Electron microscopy | 2.8 | 2022-10-19 |
Release history
| Release | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 8G9Z|1|E | High-resolution crystal structure of the human selenomethionine-derived SepSecS-tRNASec complex | X-RAY DIFFRACTION | 2.07 | 174 | |
| 2 | 4ZDO|1|E | The crystal structure of T325S mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec) | X-RAY DIFFRACTION | 2.65 | 150 | |
| 3 | 4ZDP|1|E | The crystal structure of Y334C mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec) | X-RAY DIFFRACTION | 2.7 | 148 | |
| 4 | 3HL2|1|E | The crystal structure of the human SepSecS-tRNASec complex | X-RAY DIFFRACTION | 2.81 | 164 | |
| 5 | 3A3A|1|A | Crystal structure of human selenocystine tRNA | X-RAY DIFFRACTION | 3.1 | 86 | |
| 6 | 4RQF|1|C | human Seryl-tRNA synthetase dimer complexed with one molecule of tRNAsec | X-RAY DIFFRACTION | 3.5 | 63 | |
| 7 | 7ZJW|1|F | Rabbit 80S ribosome as it decodes the Sec-UGA codon | ELECTRON MICROSCOPY | 2.8 | 90 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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