Equivalence class NR_3.5_91171.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8JDK|1|F (rep) | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF00002 | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU) | Electron microscopy | 2.26 | 2023-12-06 |
| 2 | 8JDL|1|F | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF00002 | Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state) | Electron microscopy | 2.42 | 2023-12-06 |
| 3 | 8JDJ|1|F | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF00002 | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU) | Electron microscopy | 2.5 | 2023-12-06 |
| 4 | 8JDM|1|F | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF00002 | Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state) | Electron microscopy | 2.67 | 2023-12-06 |
| 5 | 8BF9|1|8 | 5.8S ribosomal RNA | RNA (156-MER) | Ovis aries | Eukarya | RF00002 | Molecular view of ER membrane remodeling by the Sec61/TRAP translocon. | Electron microscopy | 2.69 | 2023-11-01 |
| 6 | 6SXO|1|L8 | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF00002 | Cryo-EM structure of the human Ebp1-ribosome complex | Electron microscopy | 3.3 | 2020-02-19 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 8BF9|1|8 | Molecular view of ER membrane remodeling by the Sec61/TRAP translocon. | ELECTRON MICROSCOPY | 2.69 | 98 | |
| 2 | 8JDL|1|F | Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state) | ELECTRON MICROSCOPY | 2.42 | 155 | |
| 3 | 8JDM|1|F | Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state) | ELECTRON MICROSCOPY | 2.67 | 155 | |
| 4 | 8JDJ|1|F | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU) | ELECTRON MICROSCOPY | 2.5 | 155 | |
| 5 | 8JDK|1|F | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU) | ELECTRON MICROSCOPY | 2.26 | 155 | |
| 6 | 6SXO|1|L8 | Cryo-EM structure of the human Ebp1-ribosome complex | ELECTRON MICROSCOPY | 3.3 | 58 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: