NR_3.5_93855.19

Members (43)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	7QI4\|1\|AA (rep)	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome at 2.2 A resolution	Electron microscopy	2.21	954	2022-07-13
2	8RRI\|1\|AA	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with antibiotic tigecycline	Electron microscopy	2.4	954	2025-03-12
3	7P2E\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin	Electron microscopy	2.4	955	2022-07-27
4	6ZM6\|1\|AA	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA	Electron microscopy	2.59	954	2021-01-13
5	7QI5\|1\|AA	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution	Electron microscopy	2.63	954	2023-07-05
6	7PNX\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a	Electron microscopy	2.76	951	2022-06-15
7	8ANY\|1\|AA	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA	Electron microscopy	2.85	954	2023-08-16
8	8CSS\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial small subunit assembly intermediate (State D)	Electron microscopy	2.36	846	2022-12-14
9	6ZM5\|1\|AA	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide	Electron microscopy	2.89	954	2021-01-13
10	7QI6\|1\|AA	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution	Electron microscopy	2.98	954	2023-05-17
11	7PO3\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome small subunit	Electron microscopy	2.92	955	2022-06-15
12	7PO1\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Initiation complex of human mitochondrial ribosome small subunit with IF3	Electron microscopy	2.92	955	2022-06-15
13	7PO0\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3	Electron microscopy	2.9	951	2022-06-15
14	6RW4\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3	Electron microscopy	2.97	955	2020-06-03
15	8OIS\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA	Electron microscopy	3	955	2023-06-14
16	6VMI\|1\|AA	Small subunit ribosomal RNA	12s rRNA	Homo sapiens	Mitochondria	RF00177	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)	Electron microscopy	2.96	944	2020-08-05
17	8K2A\|1\|S1	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Cryo-EM structure of the human 55S mitoribosome with Tigecycline	Electron microscopy	2.9	928	2024-07-10
18	6VLZ\|1\|AA	Small subunit ribosomal RNA	12s rRNA	Homo sapiens	Mitochondria	RF00177	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)	Electron microscopy	2.97	944	2020-08-05
19	8CSR\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial small subunit assembly intermediate (State C)	Electron microscopy	2.54	853	2022-12-14
20	8QRN\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Eukarya	RF00177	mt-SSU in GTPBP8 knock-out cells, state 4	Electron microscopy	2.98	955	2024-06-26
21	8OIR\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	55S human mitochondrial ribosome with mtRF1 and P-site tRNA	Electron microscopy	3.1	955	2023-06-14
22	8QRM\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Eukarya	RF00177	mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3	Electron microscopy	3.05	955	2024-06-26
23	7PO2\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Initiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNA	Electron microscopy	3.09	955	2022-06-15
24	7PNY\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation b	Electron microscopy	3.06	951	2022-06-15
25	9G5D\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Assembly intermediate of human mitochondrial ribosome small subunit (State C)	Electron microscopy	3	917	2025-04-23
26	7PNZ\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation c	Electron microscopy	3.09	951	2022-06-15
27	6RW5\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3	Electron microscopy	3.14	955	2020-06-03
28	8CST\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial small subunit assembly intermediate (State E)	Electron microscopy	2.85	888	2022-12-14
29	8CSQ\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial small subunit assembly intermediate (State B)	Electron microscopy	2.54	802	2022-12-14
30	9G5C\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Assembly intermediate of human mitochondrial ribosome small subunit (State B)	Electron microscopy	3	890	2025-04-23
31	8XT0\|1\|S1	Small subunit ribosomal RNA	12s rRNA	Homo sapiens	Mitochondria	RF00177	Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline	Electron microscopy	3.2	928	2024-07-10
32	9HFM\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Translation-initiation state of human mitochondrial ribosome small subunit (State D)	Electron microscopy	3	896	2025-04-23
33	9HFO\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Translation-initiation state of human mitochondrial ribosome small subunit (State G)	Electron microscopy	3.1	909	2025-04-23
34	8QRL\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Eukarya	RF00177	mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2	Electron microscopy	3.34	951	2024-06-26
35	8XT2\|1\|S1	Small subunit ribosomal RNA	12s rRNA	Homo sapiens	Mitochondria	RF00177	Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline	Electron microscopy	3.3	928	2024-07-10
36	8CSU\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial small subunit assembly intermediate (State C*)	Electron microscopy	3.03	881	2022-12-14
37	7L08\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.	Electron microscopy	3.49	944	2021-05-12
38	8CSP\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial small subunit assembly intermediate (State A)	Electron microscopy	2.66	737	2022-12-14
39	9G5E\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Translation-initiation state of human mitochondrial ribosome small subunit (State F)	Electron microscopy	3.2	896	2025-04-23
40	9HFN\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Translation-initiation state of human mitochondrial ribosome small subunit (State E)	Electron microscopy	3.3	896	2025-04-23
41	6ZSC\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with E-site tRNA	Electron microscopy	3.5	927	2020-09-16
42	9G5B\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Assembly intermediate of human mitochondrial ribosome small subunit (State A)	Electron microscopy	3.2	816	2025-04-23
43	3J9M\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Structure of the human mitochondrial ribosome (class 1)	Electron microscopy	3.5	923	2015-04-15

Release history

Release	3.384	3.385	3.386	3.387	3.388	3.389	3.390	3.391	3.392	3.393	3.394	3.395
Date	2025-04-23	2025-04-30	2025-05-07	2025-05-14	2025-05-21	2025-05-28	2025-06-04	2025-06-11	2025-06-18	2025-06-25	2025-07-02	2025-07-09

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	7PNY\|1\|A	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation b	ELECTRON MICROSCOPY	3.06	951
2	6VLZ\|1\|AA	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)	ELECTRON MICROSCOPY	2.97	944
3	6VMI\|1\|AA	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)	ELECTRON MICROSCOPY	2.96	944
4	7L08\|1\|AA	Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.	ELECTRON MICROSCOPY	3.49	944
5	3J9M\|1\|AA	Structure of the human mitochondrial ribosome (class 1)	ELECTRON MICROSCOPY	3.5	923
6	8K2A\|1\|S1	Cryo-EM structure of the human 55S mitoribosome with Tigecycline	ELECTRON MICROSCOPY	2.9	928
7	8XT2\|1\|S1	Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline	ELECTRON MICROSCOPY	3.3	928
8	8XT0\|1\|S1	Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline	ELECTRON MICROSCOPY	3.2	928
9	6ZSC\|1\|AA	Human mitochondrial ribosome in complex with E-site tRNA	ELECTRON MICROSCOPY	3.5	927
10	8RRI\|1\|AA	Human mitochondrial ribosome in complex with antibiotic tigecycline	ELECTRON MICROSCOPY	2.4	954
11	6ZM5\|1\|AA	Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide	ELECTRON MICROSCOPY	2.89	954
12	6ZM6\|1\|AA	Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA	ELECTRON MICROSCOPY	2.59	954
13	7QI5\|1\|AA	Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution	ELECTRON MICROSCOPY	2.63	954
14	8ANY\|1\|AA	Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA	ELECTRON MICROSCOPY	2.85	954
15	7QI4\|1\|AA	Human mitochondrial ribosome at 2.2 A resolution	ELECTRON MICROSCOPY	2.21	954
16	7QI6\|1\|AA	Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution	ELECTRON MICROSCOPY	2.98	954
17	8OIR\|1\|AA	55S human mitochondrial ribosome with mtRF1 and P-site tRNA	ELECTRON MICROSCOPY	3.1	955
18	8OIS\|1\|AA	28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA	ELECTRON MICROSCOPY	3	955
19	9G5E\|1\|A	Translation-initiation state of human mitochondrial ribosome small subunit (State F)	ELECTRON MICROSCOPY	3.2	896
20	9HFN\|1\|A	Translation-initiation state of human mitochondrial ribosome small subunit (State E)	ELECTRON MICROSCOPY	3.3	896
21	9HFM\|1\|A	Translation-initiation state of human mitochondrial ribosome small subunit (State D)	ELECTRON MICROSCOPY	3	896
22	7PO1\|1\|A	Initiation complex of human mitochondrial ribosome small subunit with IF3	ELECTRON MICROSCOPY	2.92	955
23	7PO3\|1\|A	Human mitochondrial ribosome small subunit	ELECTRON MICROSCOPY	2.92	955
24	9HFO\|1\|A	Translation-initiation state of human mitochondrial ribosome small subunit (State G)	ELECTRON MICROSCOPY	3.1	909
25	7PO2\|1\|A	Initiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNA	ELECTRON MICROSCOPY	3.09	955
26	8QRN\|1\|A	mt-SSU in GTPBP8 knock-out cells, state 4	ELECTRON MICROSCOPY	2.98	955
27	6RW5\|1\|A	Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3	ELECTRON MICROSCOPY	3.14	955
28	8QRM\|1\|A	mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3	ELECTRON MICROSCOPY	3.05	955
29	6RW4\|1\|A	Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3	ELECTRON MICROSCOPY	2.97	955
30	7P2E\|1\|A	Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin	ELECTRON MICROSCOPY	2.4	955
31	7PNZ\|1\|A	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation c	ELECTRON MICROSCOPY	3.09	951
32	7PO0\|1\|A	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3	ELECTRON MICROSCOPY	2.9	951
33	8QRL\|1\|A	mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2	ELECTRON MICROSCOPY	3.34	951
34	7PNX\|1\|A	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a	ELECTRON MICROSCOPY	2.76	951
35	9G5D\|1\|A	Assembly intermediate of human mitochondrial ribosome small subunit (State C)	ELECTRON MICROSCOPY	3	917
36	9G5B\|1\|A	Assembly intermediate of human mitochondrial ribosome small subunit (State A)	ELECTRON MICROSCOPY	3.2	816
37	9G5C\|1\|A	Assembly intermediate of human mitochondrial ribosome small subunit (State B)	ELECTRON MICROSCOPY	3	890
38	8CST\|1\|A	Human mitochondrial small subunit assembly intermediate (State E)	ELECTRON MICROSCOPY	2.85	888
39	8CSS\|1\|A	Human mitochondrial small subunit assembly intermediate (State D)	ELECTRON MICROSCOPY	2.36	846
40	8CSR\|1\|A	Human mitochondrial small subunit assembly intermediate (State C)	ELECTRON MICROSCOPY	2.54	853
41	8CSU\|1\|A	Human mitochondrial small subunit assembly intermediate (State C*)	ELECTRON MICROSCOPY	3.03	881
42	8CSQ\|1\|A	Human mitochondrial small subunit assembly intermediate (State B)	ELECTRON MICROSCOPY	2.54	802
43	8CSP\|1\|A	Human mitochondrial small subunit assembly intermediate (State A)	ELECTRON MICROSCOPY	2.66	737

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_3.5_93855.19 Current

Release history

Parents

Children