RNA 3D Hub //

Equivalence class NR_3.5_96091.8 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19KDT|1|L5+ 9KDT|1|L8 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNAMus musculus 28S ribosomal RNA, Mus musculus 5.8S ribosomal RNAMus musculusEukaryaRF02543 + RF00002Cryo-EM structure of 80S ribosomeElectron microscopy2.6335502026-05-13
27CPU|1|L5+ 7CPU|1|L8Large subunit ribosomal RNA + 5.8S ribosomal RNAMus musculus 28S ribosomal RNA, Mus musculus 5.8S ribosomal RNAMus musculusEukaryaRF02543 + RF00002Cryo-EM structure of 80S ribosome from mouse kidneyElectron microscopy2.8236952022-02-02
39KDW|1|L5+ 9KDW|1|L8Large subunit ribosomal RNA + 5.8S ribosomal RNAMus musculus 28S ribosomal RNA, Mus musculus 5.8S ribosomal RNAMus musculusEukaryaRF02543 + RF00002Cryo-EM structure of 80S ribosomeElectron microscopy2.6735502026-05-13
49H4N|1|A2+ 9H4N|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAMus musculusEukaryaRF02543 + RF00002RPL13 (eL13)-mutant 80S ribosome from mouseElectron microscopy2.4637652025-11-05
59KDU|1|L5+ 9KDU|1|L8Large subunit ribosomal RNA + 5.8S ribosomal RNAMus musculus 28S ribosomal RNA, Mus musculus 5.8S ribosomal RNAMus musculusEukaryaRF02543 + RF00002Cryo-EM structure of 80S ribosomeElectron microscopy2.9635432026-05-13
67CPV|1|L5+ 7CPV|1|L8Large subunit ribosomal RNA + 5.8S ribosomal RNAMus musculus 28S ribosomal RNA, Mus musculus 5.8S ribosomal RNAMus musculusEukaryaRF02543 + RF00002Cryo-EM structure of 80S ribosome from mouse testisElectron microscopy3.0336972022-02-02
79QQP|1|A2+ 9QQP|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAMus musculusEukaryaRF02543 + RF00002Mouse Ribosome rotated-2 PRE stateElectron microscopy2.836682026-04-15
89QOH|1|A2+ 9QOH|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAMus musculusEukaryaRF02543 + RF00002Mouse Ribosome POST translocation stateElectron microscopy2.7837712026-04-08
99QWT|1|A2+ 9QWT|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAMus musculusEukaryaRF02543 + RF00002Mouse Ribosome RPS15 (uS19) P131S rotated-2 PRE stateElectron microscopy3.136682026-04-29
107LS2|1|A2+ 7LS2|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAMus musculusEukaryaRF02543 + RF0000280S ribosome from mouse bound to eEF2 (Class I)Electron microscopy3.138622021-11-03
119QQL|1|A2+ 9QQL|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAMus musculusEukaryaRF02543 + RF00002Mouse RPS15 P131 Mutant Ribosome POST translocation stateElectron microscopy3.0937712026-04-15
129KDV|1|L5+ 9KDV|1|L8Large subunit ribosomal RNA + 5.8S ribosomal RNAMus musculus 28S ribosomal RNA, Mus musculus 5.8S ribosomal RNAMus musculusEukaryaRF02543 + RF00002Cryo-EM structure of 80S ribosomeElectron microscopy3.3335502026-05-13
136SWA|1|q+ 6SWA|1|rLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA (3612-MER), 5.8S ribosomal RNA (157-MER)Mus musculusEukaryaRF02543 + RF00002Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1Electron microscopy3.137692020-09-30
149QSA|1|A2+ 9QSA|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAMus musculusEukaryaRF02543 + RF00002Mouse Ribosome rotated-1 PRE stateElectron microscopy3.436672026-04-15
157LS1|1|A2+ 7LS1|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAMus musculusEukaryaRF02543 + RF0000280S ribosome from mouse bound to eEF2 (Class II)Electron microscopy3.338632021-11-03

Release history

Release4.39
Date2026-05-13

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
19KDU|1|L5+ 9KDU|1|L8Cryo-EM structure of 80S ribosomeELECTRON MICROSCOPY2.963543
29KDT|1|L5+ 9KDT|1|L8Cryo-EM structure of 80S ribosomeELECTRON MICROSCOPY2.633550
39KDV|1|L5+ 9KDV|1|L8Cryo-EM structure of 80S ribosomeELECTRON MICROSCOPY3.333550
49KDW|1|L5+ 9KDW|1|L8Cryo-EM structure of 80S ribosomeELECTRON MICROSCOPY2.673550
57CPV|1|L5+ 7CPV|1|L8Cryo-EM structure of 80S ribosome from mouse testisELECTRON MICROSCOPY3.033697
67CPU|1|L5+ 7CPU|1|L8Cryo-EM structure of 80S ribosome from mouse kidneyELECTRON MICROSCOPY2.823695
79QQL|1|A2+ 9QQL|1|C2Mouse RPS15 P131 Mutant Ribosome POST translocation stateELECTRON MICROSCOPY3.093771
89QOH|1|A2+ 9QOH|1|C2Mouse Ribosome POST translocation stateELECTRON MICROSCOPY2.783771
99QQP|1|A2+ 9QQP|1|C2Mouse Ribosome rotated-2 PRE stateELECTRON MICROSCOPY2.83668
109QWT|1|A2+ 9QWT|1|C2Mouse Ribosome RPS15 (uS19) P131S rotated-2 PRE stateELECTRON MICROSCOPY3.13668
119QSA|1|A2+ 9QSA|1|C2Mouse Ribosome rotated-1 PRE stateELECTRON MICROSCOPY3.43667
129H4N|1|A2+ 9H4N|1|C2RPL13 (eL13)-mutant 80S ribosome from mouseELECTRON MICROSCOPY2.463765
137LS2|1|A2+ 7LS2|1|C280S ribosome from mouse bound to eEF2 (Class I)ELECTRON MICROSCOPY3.13862
147LS1|1|A2+ 7LS1|1|C280S ribosome from mouse bound to eEF2 (Class II)ELECTRON MICROSCOPY3.33863
156SWA|1|q+ 6SWA|1|rMus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1ELECTRON MICROSCOPY3.13769

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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