RNA 3D Hub //

Equivalence class NR_3.5_96169.4 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17UVZ|1|A (rep)Large subunit ribosomal RNA23s ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF02541A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNAElectron microscopy2.2127302023-04-19
27UW1|1|ALarge subunit ribosomal RNA23s ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF02541A. baumannii 70S ribosome-Streptothricin-D complexElectron microscopy2.2127262023-04-19
37UVX|1|ALarge subunit ribosomal RNA23s ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF02541A. baumannii 70S ribosome-Streptothricin-F complexElectron microscopy2.3527152023-04-19
47UVW|1|ALarge subunit ribosomal RNA23s ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF02541A. baumannii ribosome: 70S with E-site tRNAElectron microscopy2.3727192023-04-19
57UVY|1|ALarge subunit ribosomal RNA23s ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF02541A. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNAElectron microscopy2.3927242023-04-19
67RYG|1|ALarge subunit ribosomal RNA23S ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF02541A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70SElectron microscopy2.3826852022-02-02
77RYH|1|ALarge subunit ribosomal RNA23S ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF02541A. baumannii Ribosome-TP-6076 complex: Empty 70SElectron microscopy2.4326852022-02-02
87M4Y|1|ALarge subunit ribosomal RNA23s ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF02541A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNAElectron microscopy2.527302021-05-19
97UVV|1|ALarge subunit ribosomal RNA23s ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF02541A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNAElectron microscopy2.527242023-04-19
107M4W|1|ALarge subunit ribosomal RNA23s ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF02541A. baumannii Ribosome-Eravacycline complex: 70S EmptyElectron microscopy2.5527302021-05-19
116YSI|1|1Large subunit ribosomal RNA23S ribosomal RNAAcinetobacter baumanniiBacteriaRF02541Acinetobacter baumannii ribosome-tigecycline complex - 50S subunitElectron microscopy2.526722020-09-16
127M4V|1|ALarge subunit ribosomal RNA23s ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF02541A. baumannii Ribosome-Eravacycline complex: 50SElectron microscopy2.5427322021-05-19
137M4X|1|ALarge subunit ribosomal RNA23s ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF02541A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNAElectron microscopy2.6627302021-05-19
146V3A|1|AN1Large subunit ribosomal RNA23s ribosomal RNAAcinetobacter baumanniiBacteriaRF02541Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNAElectron microscopy2.8228922020-02-05
157RYF|1|ALarge subunit ribosomal RNA23S ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF02541A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70SElectron microscopy2.6526852022-02-02
166YHS|1|1Large subunit ribosomal RNA23S ribosomal RNAAcinetobacter baumanniiBacteriaRF02541Acinetobacter baumannii ribosome-amikacin complex - 50S subunitElectron microscopy2.726722020-09-16
176V3B|1|AN1Large subunit ribosomal RNA23s ribosomal RNAAcinetobacter baumanniiBacteriaRF02541Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty stateElectron microscopy2.9128922020-02-05
186V3D|1|AN1Large subunit ribosomal RNA23s ribosomal RNAAcinetobacter baumanniiBacteriaRF02541Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunitElectron microscopy2.9528922020-02-05
197M4Z|1|ALarge subunit ribosomal RNA23s ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF02541A. baumannii Ribosome-Eravacycline complex: 70S with hpfElectron microscopy2.9227302021-05-19
206V39|1|AN1Large subunit ribosomal RNA23s ribosomal RNAAcinetobacter baumanniiBacteriaRF02541Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNAElectron microscopy3.0428922020-02-05

Release history

Release3.3783.3793.3803.3813.3823.3833.384
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
16YSI|1|1Acinetobacter baumannii ribosome-tigecycline complex - 50S subunitELECTRON MICROSCOPY2.52672
26YHS|1|1Acinetobacter baumannii ribosome-amikacin complex - 50S subunitELECTRON MICROSCOPY2.72672
37M4Z|1|AA. baumannii Ribosome-Eravacycline complex: 70S with hpfELECTRON MICROSCOPY2.922730
47M4X|1|AA. baumannii Ribosome-Eravacycline complex: 70S with P-tRNAELECTRON MICROSCOPY2.662730
57M4W|1|AA. baumannii Ribosome-Eravacycline complex: 70S EmptyELECTRON MICROSCOPY2.552730
67M4Y|1|AA. baumannii Ribosome-Eravacycline complex: 70S with E-tRNAELECTRON MICROSCOPY2.52730
77UVV|1|AA. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNAELECTRON MICROSCOPY2.52724
87UVY|1|AA. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNAELECTRON MICROSCOPY2.392724
97UW1|1|AA. baumannii 70S ribosome-Streptothricin-D complexELECTRON MICROSCOPY2.212726
107UVZ|1|AA. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNAELECTRON MICROSCOPY2.212730
117UVW|1|AA. baumannii ribosome: 70S with E-site tRNAELECTRON MICROSCOPY2.372719
127UVX|1|AA. baumannii 70S ribosome-Streptothricin-F complexELECTRON MICROSCOPY2.352715
137M4V|1|AA. baumannii Ribosome-Eravacycline complex: 50SELECTRON MICROSCOPY2.542732
147RYG|1|AA. baumannii Ribosome-TP-6076 complex: E-site tRNA 70SELECTRON MICROSCOPY2.382685
157RYH|1|AA. baumannii Ribosome-TP-6076 complex: Empty 70SELECTRON MICROSCOPY2.432685
167RYF|1|AA. baumannii Ribosome-TP-6076 complex: P-site tRNA 70SELECTRON MICROSCOPY2.652685
176V39|1|AN1Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNAELECTRON MICROSCOPY3.042892
186V3D|1|AN1Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunitELECTRON MICROSCOPY2.952892
196V3B|1|AN1Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty stateELECTRON MICROSCOPY2.912892
206V3A|1|AN1Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNAELECTRON MICROSCOPY2.822892

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.4278 s