RNA 3D Hub //

Equivalence class NR_3.5_97539.5 Obsolete

Showing 1 to 15 of 15 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18FR8|1|a (rep)Small subunit ribosomal RNA16S rRNA (1511-MER)Mycolicibacterium smegmatis MC2 155BacteriaRF00177Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complexElectron microscopy2.7615112023-05-17
28WHX|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.Electron microscopy2.815152024-02-28
38WIF|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.Electron microscopy2.915172024-02-28
48V9L|1|aSmall subunit ribosomal RNA16S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)Electron microscopy315112024-02-07
58V9K|1|aSmall subunit ribosomal RNA16S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)Electron microscopy3.115112024-02-07
68V9J|1|aSmall subunit ribosomal RNA16S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)Electron microscopy3.115112024-02-07
75ZEB|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177M. Smegmatis P/P state 70S ribosome structureElectron microscopy3.415062018-09-26
85ZEP|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177M. smegmatis hibernating state 70S ribosome structureElectron microscopy3.415062018-09-26
96DZI|1|hSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexElectron microscopy3.4615112018-09-26
108WID|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.Electron microscopy3.515152024-02-28
118WIB|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.Electron microscopy3.515152024-02-28
128WI9|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.Electron microscopy3.515152024-02-28
138WI7|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.Electron microscopy3.515152024-02-28
145O5J|1|ASmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177Structure of the 30S small ribosomal subunit from Mycobacterium smegmatisElectron microscopy3.4515112017-07-12
155XYU|1|ASmall subunit ribosomal RNA16S RNAMycolicibacterium smegmatisBacteriaRF00177Small subunit of Mycobacterium smegmatis ribosomeElectron microscopy3.4513792017-09-27

Release history

Release3.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.362
Date2024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-20

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 15 of 15 entries
#SViewPDBTitleMethodResolution#NTs
15XYU|1|ASmall subunit of Mycobacterium smegmatis ribosomeELECTRON MICROSCOPY3.451379
28FR8|1|aStructure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complexELECTRON MICROSCOPY2.761511
35ZEB|1|aM. Smegmatis P/P state 70S ribosome structureELECTRON MICROSCOPY3.41506
45ZEP|1|aM. smegmatis hibernating state 70S ribosome structureELECTRON MICROSCOPY3.41506
55O5J|1|AStructure of the 30S small ribosomal subunit from Mycobacterium smegmatisELECTRON MICROSCOPY3.451511
68WHX|1|aCryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.ELECTRON MICROSCOPY2.81515
78WIF|1|aCryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.ELECTRON MICROSCOPY2.91517
88WID|1|aCryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.ELECTRON MICROSCOPY3.51515
98WIB|1|aCryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.ELECTRON MICROSCOPY3.51515
108WI9|1|aCryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.ELECTRON MICROSCOPY3.51515
118WI7|1|aCryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.ELECTRON MICROSCOPY3.51515
126DZI|1|hCryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexELECTRON MICROSCOPY3.461511
138V9K|1|aCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)ELECTRON MICROSCOPY3.11511
148V9L|1|aCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)ELECTRON MICROSCOPY31511
158V9J|1|aCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)ELECTRON MICROSCOPY3.11511

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

5XYU|1|A:5XYU|1|A = 05XYU|1|A:8FR8|1|a = 0.06205XYU|1|A:5ZEB|1|a = 0.04375XYU|1|A:5ZEP|1|a = 0.04365XYU|1|A:5O5J|1|A = 0.04365XYU|1|A:8WHX|1|a = 0.05415XYU|1|A:8WIF|1|a = 0.05375XYU|1|A:8WID|1|a = 0.05365XYU|1|A:8WIB|1|a = 0.05365XYU|1|A:8WI9|1|a = 0.05445XYU|1|A:8WI7|1|a = 0.05445XYU|1|A:6DZI|1|h = 0.05205XYU|1|A:8V9K|1|a = 0.18875XYU|1|A:8V9L|1|a = 0.18865XYU|1|A:8V9J|1|a = 0.19078FR8|1|a:5XYU|1|A = 0.06208FR8|1|a:8FR8|1|a = 08FR8|1|a:5ZEB|1|a = 0.03908FR8|1|a:5ZEP|1|a = 0.03908FR8|1|a:5O5J|1|A = 0.03828FR8|1|a:8WHX|1|a = 0.03968FR8|1|a:8WIF|1|a = 0.04018FR8|1|a:8WID|1|a = 0.04078FR8|1|a:8WIB|1|a = 0.04078FR8|1|a:8WI9|1|a = 0.04188FR8|1|a:8WI7|1|a = 0.04188FR8|1|a:6DZI|1|h = 0.04828FR8|1|a:8V9K|1|a = 0.17728FR8|1|a:8V9L|1|a = 0.17518FR8|1|a:8V9J|1|a = 0.17615ZEB|1|a:5XYU|1|A = 0.04375ZEB|1|a:8FR8|1|a = 0.03905ZEB|1|a:5ZEB|1|a = 05ZEB|1|a:5ZEP|1|a = 0.00165ZEB|1|a:5O5J|1|A = 0.00915ZEB|1|a:8WHX|1|a = 0.02695ZEB|1|a:8WIF|1|a = 0.02655ZEB|1|a:8WID|1|a = 0.02655ZEB|1|a:8WIB|1|a = 0.02685ZEB|1|a:8WI9|1|a = 0.02795ZEB|1|a:8WI7|1|a = 0.02795ZEB|1|a:6DZI|1|h = 0.02955ZEB|1|a:8V9K|1|a = 0.16615ZEB|1|a:8V9L|1|a = 0.16575ZEB|1|a:8V9J|1|a = 0.16725ZEP|1|a:5XYU|1|A = 0.04365ZEP|1|a:8FR8|1|a = 0.03905ZEP|1|a:5ZEB|1|a = 0.00165ZEP|1|a:5ZEP|1|a = 05ZEP|1|a:5O5J|1|A = 0.00915ZEP|1|a:8WHX|1|a = 0.02695ZEP|1|a:8WIF|1|a = 0.02655ZEP|1|a:8WID|1|a = 0.02655ZEP|1|a:8WIB|1|a = 0.02685ZEP|1|a:8WI9|1|a = 0.02795ZEP|1|a:8WI7|1|a = 0.02795ZEP|1|a:6DZI|1|h = 0.02965ZEP|1|a:8V9K|1|a = 0.16615ZEP|1|a:8V9L|1|a = 0.16575ZEP|1|a:8V9J|1|a = 0.16725O5J|1|A:5XYU|1|A = 0.04365O5J|1|A:8FR8|1|a = 0.03825O5J|1|A:5ZEB|1|a = 0.00915O5J|1|A:5ZEP|1|a = 0.00915O5J|1|A:5O5J|1|A = 05O5J|1|A:8WHX|1|a = 0.02435O5J|1|A:8WIF|1|a = 0.02395O5J|1|A:8WID|1|a = 0.02425O5J|1|A:8WIB|1|a = 0.02425O5J|1|A:8WI9|1|a = 0.02535O5J|1|A:8WI7|1|a = 0.02535O5J|1|A:6DZI|1|h = 0.02825O5J|1|A:8V9K|1|a = 0.16535O5J|1|A:8V9L|1|a = 0.16495O5J|1|A:8V9J|1|a = 0.16648WHX|1|a:5XYU|1|A = 0.05418WHX|1|a:8FR8|1|a = 0.03968WHX|1|a:5ZEB|1|a = 0.02698WHX|1|a:5ZEP|1|a = 0.02698WHX|1|a:5O5J|1|A = 0.02438WHX|1|a:8WHX|1|a = 08WHX|1|a:8WIF|1|a = 0.00388WHX|1|a:8WID|1|a = 0.00568WHX|1|a:8WIB|1|a = 0.00568WHX|1|a:8WI9|1|a = 0.00718WHX|1|a:8WI7|1|a = 0.00718WHX|1|a:6DZI|1|h = 0.02728WHX|1|a:8V9K|1|a = 0.16008WHX|1|a:8V9L|1|a = 0.15938WHX|1|a:8V9J|1|a = 0.16058WIF|1|a:5XYU|1|A = 0.05378WIF|1|a:8FR8|1|a = 0.04018WIF|1|a:5ZEB|1|a = 0.02658WIF|1|a:5ZEP|1|a = 0.02658WIF|1|a:5O5J|1|A = 0.02398WIF|1|a:8WHX|1|a = 0.00388WIF|1|a:8WIF|1|a = 08WIF|1|a:8WID|1|a = 0.00458WIF|1|a:8WIB|1|a = 0.00458WIF|1|a:8WI9|1|a = 0.00658WIF|1|a:8WI7|1|a = 0.00668WIF|1|a:6DZI|1|h = 0.02708WIF|1|a:8V9K|1|a = 0.15948WIF|1|a:8V9L|1|a = 0.15878WIF|1|a:8V9J|1|a = 0.16008WID|1|a:5XYU|1|A = 0.05368WID|1|a:8FR8|1|a = 0.04078WID|1|a:5ZEB|1|a = 0.02658WID|1|a:5ZEP|1|a = 0.02658WID|1|a:5O5J|1|A = 0.02428WID|1|a:8WHX|1|a = 0.00568WID|1|a:8WIF|1|a = 0.00458WID|1|a:8WID|1|a = 08WID|1|a:8WIB|1|a = 0.00198WID|1|a:8WI9|1|a = 0.00588WID|1|a:8WI7|1|a = 0.00588WID|1|a:6DZI|1|h = 0.02668WID|1|a:8V9K|1|a = 0.15958WID|1|a:8V9L|1|a = 0.15898WID|1|a:8V9J|1|a = 0.16018WIB|1|a:5XYU|1|A = 0.05368WIB|1|a:8FR8|1|a = 0.04078WIB|1|a:5ZEB|1|a = 0.02688WIB|1|a:5ZEP|1|a = 0.02688WIB|1|a:5O5J|1|A = 0.02428WIB|1|a:8WHX|1|a = 0.00568WIB|1|a:8WIF|1|a = 0.00458WIB|1|a:8WID|1|a = 0.00198WIB|1|a:8WIB|1|a = 08WIB|1|a:8WI9|1|a = 0.00568WIB|1|a:8WI7|1|a = 0.00568WIB|1|a:6DZI|1|h = 0.02678WIB|1|a:8V9K|1|a = 0.15958WIB|1|a:8V9L|1|a = 0.15888WIB|1|a:8V9J|1|a = 0.16018WI9|1|a:5XYU|1|A = 0.05448WI9|1|a:8FR8|1|a = 0.04188WI9|1|a:5ZEB|1|a = 0.02798WI9|1|a:5ZEP|1|a = 0.02798WI9|1|a:5O5J|1|A = 0.02538WI9|1|a:8WHX|1|a = 0.00718WI9|1|a:8WIF|1|a = 0.00658WI9|1|a:8WID|1|a = 0.00588WI9|1|a:8WIB|1|a = 0.00568WI9|1|a:8WI9|1|a = 08WI9|1|a:8WI7|1|a = 0.00128WI9|1|a:6DZI|1|h = 0.02688WI9|1|a:8V9K|1|a = 0.15928WI9|1|a:8V9L|1|a = 0.15868WI9|1|a:8V9J|1|a = 0.15988WI7|1|a:5XYU|1|A = 0.05448WI7|1|a:8FR8|1|a = 0.04188WI7|1|a:5ZEB|1|a = 0.02798WI7|1|a:5ZEP|1|a = 0.02798WI7|1|a:5O5J|1|A = 0.02538WI7|1|a:8WHX|1|a = 0.00718WI7|1|a:8WIF|1|a = 0.00668WI7|1|a:8WID|1|a = 0.00588WI7|1|a:8WIB|1|a = 0.00568WI7|1|a:8WI9|1|a = 0.00128WI7|1|a:8WI7|1|a = 08WI7|1|a:6DZI|1|h = 0.02688WI7|1|a:8V9K|1|a = 0.15928WI7|1|a:8V9L|1|a = 0.15868WI7|1|a:8V9J|1|a = 0.15986DZI|1|h:5XYU|1|A = 0.05206DZI|1|h:8FR8|1|a = 0.04826DZI|1|h:5ZEB|1|a = 0.02956DZI|1|h:5ZEP|1|a = 0.02966DZI|1|h:5O5J|1|A = 0.02826DZI|1|h:8WHX|1|a = 0.02726DZI|1|h:8WIF|1|a = 0.02706DZI|1|h:8WID|1|a = 0.02666DZI|1|h:8WIB|1|a = 0.02676DZI|1|h:8WI9|1|a = 0.02686DZI|1|h:8WI7|1|a = 0.02686DZI|1|h:6DZI|1|h = 06DZI|1|h:8V9K|1|a = 0.16166DZI|1|h:8V9L|1|a = 0.16136DZI|1|h:8V9J|1|a = 0.16278V9K|1|a:5XYU|1|A = 0.18878V9K|1|a:8FR8|1|a = 0.17728V9K|1|a:5ZEB|1|a = 0.16618V9K|1|a:5ZEP|1|a = 0.16618V9K|1|a:5O5J|1|A = 0.16538V9K|1|a:8WHX|1|a = 0.16008V9K|1|a:8WIF|1|a = 0.15948V9K|1|a:8WID|1|a = 0.15958V9K|1|a:8WIB|1|a = 0.15958V9K|1|a:8WI9|1|a = 0.15928V9K|1|a:8WI7|1|a = 0.15928V9K|1|a:6DZI|1|h = 0.16168V9K|1|a:8V9K|1|a = 08V9K|1|a:8V9L|1|a = 0.02728V9K|1|a:8V9J|1|a = 0.03008V9L|1|a:5XYU|1|A = 0.18868V9L|1|a:8FR8|1|a = 0.17518V9L|1|a:5ZEB|1|a = 0.16578V9L|1|a:5ZEP|1|a = 0.16578V9L|1|a:5O5J|1|A = 0.16498V9L|1|a:8WHX|1|a = 0.15938V9L|1|a:8WIF|1|a = 0.15878V9L|1|a:8WID|1|a = 0.15898V9L|1|a:8WIB|1|a = 0.15888V9L|1|a:8WI9|1|a = 0.15868V9L|1|a:8WI7|1|a = 0.15868V9L|1|a:6DZI|1|h = 0.16138V9L|1|a:8V9K|1|a = 0.02728V9L|1|a:8V9L|1|a = 08V9L|1|a:8V9J|1|a = 0.01708V9J|1|a:5XYU|1|A = 0.19078V9J|1|a:8FR8|1|a = 0.17618V9J|1|a:5ZEB|1|a = 0.16728V9J|1|a:5ZEP|1|a = 0.16728V9J|1|a:5O5J|1|A = 0.16648V9J|1|a:8WHX|1|a = 0.16058V9J|1|a:8WIF|1|a = 0.16008V9J|1|a:8WID|1|a = 0.16018V9J|1|a:8WIB|1|a = 0.16018V9J|1|a:8WI9|1|a = 0.15988V9J|1|a:8WI7|1|a = 0.15988V9J|1|a:6DZI|1|h = 0.16278V9J|1|a:8V9K|1|a = 0.03008V9J|1|a:8V9L|1|a = 0.01708V9J|1|a:8V9J|1|a = 05XYU|1|A8FR8|1|a5ZEB|1|a5ZEP|1|a5O5J|1|A8WHX|1|a8WIF|1|a8WID|1|a8WIB|1|a8WI9|1|a8WI7|1|a6DZI|1|h8V9K|1|a8V9L|1|a8V9J|1|aDiscrepancy0.000.050.100.15

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