RNA 3D Hub //

Equivalence class NR_3.5_97731.2 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18OPC|1|Ab (rep)RNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
28OPC|1|AdRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
38OPC|1|AfRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
48OPC|1|AhRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
58OPC|1|AjRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
68OPC|1|AlRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
78OPC|1|AnRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
88OPC|1|ApRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
98OPC|1|ArRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
108OPC|1|AtRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
118OPC|1|AvRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
128OPC|1|AxRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
138OPC|1|AzRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
148OPC|1|BbRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
158OPC|1|BdRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
168OPC|1|BfRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
178OPC|1|BhRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
188OPC|1|BjRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
198OPC|1|BlRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
208OPC|1|BnRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
218OPC|1|BpRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
228OPC|1|BrRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
238OPC|1|BtRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
248OPC|1|BvRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
258OPC|1|BxRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
268OPC|1|BzRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
278OPC|1|CbRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
288OPC|1|CdRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAElectron microscopy2.9952024-01-24
296HXX|1|AaRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
306HXX|1|AbRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
316HXX|1|AcRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
326HXX|1|AdRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
336HXX|1|AeRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
346HXX|1|AfRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
356HXX|1|AgRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
366HXX|1|AhRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
376HXX|1|AiRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
386HXX|1|AjRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
396HXX|1|AkRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
406HXX|1|AlRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
416HXX|1|AmRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
426HXX|1|AnRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
436HXX|1|AoRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
446HXX|1|ApRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
456HXX|1|AqRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
466HXX|1|ArRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
476HXX|1|AsRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
486HXX|1|AtRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
496HXX|1|AuRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
506HXX|1|AvRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
516HXX|1|AwRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
526HXX|1|AxRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
536HXX|1|AyRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
546HXX|1|AzRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
556HXX|1|BaRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
566HXX|1|BbRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
576HXX|1|BcRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
586HXX|1|BdRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
596HXX|1|BeRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
606HXX|1|BfRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
616HXX|1|BgRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
626HXX|1|BhRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
636HXX|1|BiRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07

Release history

Release3.3783.3793.3803.381
Date2025-03-132025-03-192025-03-262025-04-02

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
18OPC|1|AjVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
28OPC|1|BtVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
38OPC|1|AvVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
48OPC|1|AzVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
58OPC|1|BzVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
68OPC|1|AnVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
78OPC|1|BdVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
88OPC|1|BrVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
98OPC|1|BnVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
108OPC|1|AhVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
118OPC|1|ArVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
128OPC|1|BpVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
138OPC|1|AbVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
148OPC|1|BfVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
158OPC|1|CbVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
168OPC|1|BlVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
178OPC|1|AfVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
188OPC|1|BvVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
198OPC|1|AtVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
208OPC|1|BxVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
218OPC|1|BhVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
228OPC|1|AxVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
238OPC|1|BjVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
248OPC|1|AdVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
258OPC|1|AlVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
268OPC|1|CdVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
278OPC|1|BbVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
288OPC|1|ApVirus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.995
296HXX|1|AuPotato virus YELECTRON MICROSCOPY3.45
306HXX|1|BbPotato virus YELECTRON MICROSCOPY3.45
316HXX|1|AaPotato virus YELECTRON MICROSCOPY3.45
326HXX|1|BePotato virus YELECTRON MICROSCOPY3.45
336HXX|1|AwPotato virus YELECTRON MICROSCOPY3.45
346HXX|1|AcPotato virus YELECTRON MICROSCOPY3.45
356HXX|1|AjPotato virus YELECTRON MICROSCOPY3.45
366HXX|1|AiPotato virus YELECTRON MICROSCOPY3.45
376HXX|1|AhPotato virus YELECTRON MICROSCOPY3.45
386HXX|1|AmPotato virus YELECTRON MICROSCOPY3.45
396HXX|1|BcPotato virus YELECTRON MICROSCOPY3.45
406HXX|1|AdPotato virus YELECTRON MICROSCOPY3.45
416HXX|1|AsPotato virus YELECTRON MICROSCOPY3.45
426HXX|1|AfPotato virus YELECTRON MICROSCOPY3.45
436HXX|1|AbPotato virus YELECTRON MICROSCOPY3.45
446HXX|1|AtPotato virus YELECTRON MICROSCOPY3.45
456HXX|1|AlPotato virus YELECTRON MICROSCOPY3.45
466HXX|1|AkPotato virus YELECTRON MICROSCOPY3.45
476HXX|1|BgPotato virus YELECTRON MICROSCOPY3.45
486HXX|1|BaPotato virus YELECTRON MICROSCOPY3.45
496HXX|1|AqPotato virus YELECTRON MICROSCOPY3.45
506HXX|1|AvPotato virus YELECTRON MICROSCOPY3.45
516HXX|1|AnPotato virus YELECTRON MICROSCOPY3.45
526HXX|1|AxPotato virus YELECTRON MICROSCOPY3.45
536HXX|1|BiPotato virus YELECTRON MICROSCOPY3.45
546HXX|1|ArPotato virus YELECTRON MICROSCOPY3.45
556HXX|1|ApPotato virus YELECTRON MICROSCOPY3.45
566HXX|1|AgPotato virus YELECTRON MICROSCOPY3.45
576HXX|1|AzPotato virus YELECTRON MICROSCOPY3.45
586HXX|1|BdPotato virus YELECTRON MICROSCOPY3.45
596HXX|1|AePotato virus YELECTRON MICROSCOPY3.45
606HXX|1|AoPotato virus YELECTRON MICROSCOPY3.45
616HXX|1|BfPotato virus YELECTRON MICROSCOPY3.45
626HXX|1|AyPotato virus YELECTRON MICROSCOPY3.45
636HXX|1|BhPotato virus YELECTRON MICROSCOPY3.45

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2026 BGSU RNA group. Page generated in 0.0192 s