Equivalence class NR_4.0_01088.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8VVQ|1|SA (rep) | Transfer RNA | P-site tRNA | Bos taurus | Eukarya | RF00005 | Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets | Electron microscopy | 2.7 | 76 | 2025-07-30 |
| 2 | 8VVP|1|SA | Transfer RNA | P-site tRNA | Bos taurus | Eukarya | RF00005 | Codon sampling state obtained from Anisomycin-treated mammalian ribosomes | Electron microscopy | 2.9 | 76 | 2025-07-30 |
| 3 | 8VVR|1|SA | Transfer RNA | P-site tRNA | Bos taurus | Eukarya | RF00005 | Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes | Electron microscopy | 3.1 | 76 | 2025-07-30 |
| 4 | 8VVS|1|SA | Transfer RNA | P-site tRNA | Bos taurus | Eukarya | RF00005 | Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes | Electron microscopy | 3.1 | 76 | 2025-07-30 |
| 5 | 8VVU|1|SA | Transfer RNA | P-site tRNA | Bos taurus | Eukarya | RF00005 | Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA | Electron microscopy | 3.8 | 76 | 2025-07-30 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 8VVU|1|SA | Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA | ELECTRON MICROSCOPY | 3.8 | 76 | |
| 2 | 8VVR|1|SA | Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes | ELECTRON MICROSCOPY | 3.1 | 76 | |
| 3 | 8VVS|1|SA | Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes | ELECTRON MICROSCOPY | 3.1 | 76 | |
| 4 | 8VVP|1|SA | Codon sampling state obtained from Anisomycin-treated mammalian ribosomes | ELECTRON MICROSCOPY | 2.9 | 76 | |
| 5 | 8VVQ|1|SA | Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets | ELECTRON MICROSCOPY | 2.7 | 76 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: