Equivalence class NR_4.0_03510.22 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V88|1|A6 (rep) | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 1795 | 2014-07-09 |
| 2 | 5TBW|1|sR | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1783 | 2017-07-26 |
| 3 | 4V88|1|A2 | Small subunit ribosomal RNA | 18S RIBOSOMAL RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 1781 | 2014-07-09 |
| 4 | 5TBW|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1781 | 2017-07-26 |
| 5 | 6HHQ|1|sR | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1783 | 2019-02-20 |
| 6 | 5OBM|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-ray diffraction | 3.4 | 1739 | 2017-12-13 |
| 7 | 5I4L|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1795 | 2016-06-22 |
| 8 | 5MEI|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-ray diffraction | 3.5 | 1783 | 2017-06-28 |
| 9 | 5NDW|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome | X-ray diffraction | 3.7 | 1736 | 2017-12-13 |
| 10 | 5LYB|1|6 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 1795 | 2016-11-23 |
| 11 | 5I4L|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1781 | 2016-06-22 |
| 12 | 5OBM|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-ray diffraction | 3.4 | 1712 | 2017-12-13 |
| 13 | 5MEI|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-ray diffraction | 3.5 | 1781 | 2017-06-28 |
| 14 | 5ON6|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of haemanthamine bound to the 80S ribosome | X-ray diffraction | 3.1 | 1783 | 2018-02-28 |
| 15 | 5NDW|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome | X-ray diffraction | 3.7 | 1770 | 2017-12-13 |
| 16 | 6HHQ|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1781 | 2019-02-20 |
| 17 | 5LYB|1|2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 1781 | 2016-11-23 |
| 18 | 5NDV|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 1683 | 2017-12-13 |
| 19 | 5NDV|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 1712 | 2017-12-13 |
| 20 | 5ON6|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of haemanthamine bound to the 80S ribosome | X-ray diffraction | 3.1 | 1781 | 2018-02-28 |
| 21 | 5NDG|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of geneticin (G418) bound to the yeast 80S ribosome | X-ray diffraction | 3.7 | 1700 | 2017-12-13 |
| 22 | 5NDG|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of geneticin (G418) bound to the yeast 80S ribosome | X-ray diffraction | 3.7 | 1688 | 2017-12-13 |
| 23 | 5TGM|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 1795 | 2017-01-18 |
| 24 | 5TGM|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 1781 | 2017-01-18 |
| 25 | 4V7R|1|A1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Yeast 80S ribosome. | X-ray diffraction | 4 | 1789 | 2014-07-09 |
| 26 | 4V7R|1|C1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Yeast 80S ribosome. | X-ray diffraction | 4 | 1789 | 2014-07-09 |
| 27 | 5DAT|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 1795 | 2016-08-31 |
| 28 | 5TGA|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 1795 | 2016-11-23 |
| 29 | 5DGE|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-ray diffraction | 3.45 | 1795 | 2017-01-25 |
| 30 | 5DGV|1|6 | Small subunit ribosomal RNA | Saccharomyces cerevisiae S288c RDN37-1 miscRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 1795 | 2016-12-14 |
| 31 | 5DGF|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 1795 | 2016-12-14 |
| 32 | 5DC3|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 1795 | 2016-06-01 |
| 33 | 5DAT|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 1781 | 2016-08-31 |
| 34 | 5TGA|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 1781 | 2016-11-23 |
| 35 | 5DGV|1|2 | Small subunit ribosomal RNA | Saccharomyces cerevisiae S288c RDN37-1 miscRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 1781 | 2016-12-14 |
| 36 | 5DGE|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-ray diffraction | 3.45 | 1781 | 2017-01-25 |
| 37 | 5DGF|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 1781 | 2016-12-14 |
| 38 | 5DC3|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 1781 | 2016-06-01 |
| 39 | 4U4R|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 1795 | 2014-10-22 |
| 40 | 4U4R|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 1750 | 2014-10-22 |
| 41 | 4U3U|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 1795 | 2014-10-22 |
| 42 | 4U3U|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 1750 | 2014-10-22 |
| 43 | 4U3M|1|6 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1795 | 2014-10-22 |
| 44 | 4U4Q|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1795 | 2014-10-22 |
| 45 | 4U4U|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1795 | 2014-10-22 |
| 46 | 4U52|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1795 | 2014-10-22 |
| 47 | 4U3M|1|2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1750 | 2014-10-22 |
| 48 | 4U52|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1750 | 2014-10-22 |
| 49 | 4U4U|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1750 | 2014-10-22 |
| 50 | 4U6F|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1795 | 2014-10-22 |
| 51 | 4U4Q|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1750 | 2014-10-22 |
| 52 | 4U4N|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1795 | 2014-10-22 |
| 53 | 4U6F|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1781 | 2014-10-22 |
| 54 | 4U4Z|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1795 | 2014-10-22 |
| 55 | 4U4Y|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1795 | 2014-10-22 |
| 56 | 4U3N|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1795 | 2014-10-22 |
| 57 | 4U4Z|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1750 | 2014-10-22 |
| 58 | 4U55|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1795 | 2014-10-22 |
| 59 | 5M1J|1|22 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | Electron microscopy | 3.3 | 1781 | 2017-01-18 |
| 60 | 4U4N|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1750 | 2014-10-22 |
| 61 | 4U50|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1795 | 2014-10-22 |
| 62 | 4U51|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1795 | 2014-10-22 |
| 63 | 4U3N|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1750 | 2014-10-22 |
| 64 | 4U4Y|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1750 | 2014-10-22 |
| 65 | 4U51|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1750 | 2014-10-22 |
| 66 | 4U55|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1750 | 2014-10-22 |
| 67 | 6FAI|1|2 | Small subunit ribosomal RNA | 20S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit | Electron microscopy | 3.4 | 1775 | 2018-02-28 |
| 68 | 4U50|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1750 | 2014-10-22 |
| 69 | 5JUP|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | Electron microscopy | 3.5 | 1781 | 2016-10-05 |
| 70 | 4U53|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 1795 | 2014-10-22 |
| 71 | 4U53|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 1750 | 2014-10-22 |
| 72 | 4U56|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 1795 | 2014-10-22 |
| 73 | 4U56|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 1750 | 2014-10-22 |
| 74 | 5MC6|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae | Electron microscopy | 3.8 | 1767 | 2017-01-18 |
| 75 | 6EML|1|2 | Small subunit ribosomal RNA | pre-18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae | Electron microscopy | 3.6 | 1675 | 2017-11-29 |
| 76 | 5JUO|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit) | Electron microscopy | 4 | 1781 | 2016-10-05 |
| 77 | 5JUT|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit) | Electron microscopy | 4 | 1781 | 2016-10-05 |
| 78 | 5JUU|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit) | Electron microscopy | 4 | 1781 | 2016-10-05 |
| 79 | 6GQB|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin) | Electron microscopy | 3.9 | 1776 | 2018-07-11 |
| 80 | 6GQV|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP) | Electron microscopy | 4 | 1776 | 2018-07-11 |
| 81 | 4U4O|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-ray diffraction | 3.6 | 1791 | 2014-10-22 |
| 82 | 4U4O|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-ray diffraction | 3.6 | 1750 | 2014-10-22 |
| 83 | 5LL6|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation | Electron microscopy | 3.9 | 1325 | 2017-04-12 |
| 84 | 5WLC|1|L1+ 5WLC|1|L0+ 5WLC|1|L2 | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | The complete structure of the small subunit processome | Electron microscopy | 3.8 | 1682 | 2017-09-27 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_03510.22 | NR_4.0_03510.21 | 3.62 | (82) 4U3M|1|2, 4U3M|1|6, 4U3N|1|2, 4U3N|1|6, 4U3U|1|2, 4U3U|1|6, 4U4N|1|2, 4U4N|1|6, 4U4O|1|2, 4U4O|1|6, 4U4Q|1|2, 4U4Q|1|6, 4U4R|1|2, 4U4R|1|6, 4U4U|1|2, 4U4U|1|6, 4U4Y|1|2, 4U4Y|1|6, 4U4Z|1|2, 4U4Z|1|6, 4U50|1|2, 4U50|1|6, 4U51|1|2, 4U51|1|6, 4U52|1|2, 4U52|1|6, 4U53|1|2, 4U53|1|6, 4U55|1|2, 4U55|1|6, 4U56|1|2, 4U56|1|6, 4U6F|1|2, 4U6F|1|6, 4V7R|1|A1, 4V7R|1|C1, 4V88|1|A2, 4V88|1|A6, 5DAT|1|2, 5DAT|1|6, 5DC3|1|2, 5DC3|1|6, 5DGE|1|2, 5DGE|1|6, 5DGF|1|2, 5DGF|1|6, 5DGV|1|2, 5DGV|1|6, 5I4L|1|2, 5I4L|1|6, 5JUO|1|A, 5JUP|1|A, 5JUT|1|A, 5JUU|1|A, 5LL6|1|2, 5LYB|1|2, 5LYB|1|6, 5M1J|1|22, 5MC6|1|2, 5MEI|1|6, 5MEI|1|A, 5NDG|1|2, 5NDG|1|6, 5NDV|1|2, 5NDV|1|6, 5NDW|1|2, 5NDW|1|6, 5OBM|1|2, 5OBM|1|6, 5ON6|1|6, 5ON6|1|A, 5TBW|1|A, 5TBW|1|sR, 5TGA|1|2, 5TGA|1|6, 5TGM|1|2, 5TGM|1|6, 5WLC|1|L1+5WLC|1|L0+5WLC|1|L2, 6EML|1|2, 6FAI|1|2, 6GQB|1|2, 6GQV|1|2 | (2) 6HHQ|1|A, 6HHQ|1|sR | (0) |
Children
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 4V7R|1|C1 | Yeast 80S ribosome. | X-RAY DIFFRACTION | 4 | 1789 | |
| 2 | 5NDG|1|6 | Crystal structure of geneticin (G418) bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.7 | 1700 | |
| 3 | 5NDW|1|6 | Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.7 | 1736 | |
| 4 | 5OBM|1|6 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.4 | 1739 | |
| 5 | 5DAT|1|6 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 1795 | |
| 6 | 5DC3|1|6 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 1795 | |
| 7 | 5DGE|1|6 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 1795 | |
| 8 | 5DGF|1|6 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 1795 | |
| 9 | 5DGV|1|6 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 10 | 5TGM|1|6 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 1795 | |
| 11 | 4U56|1|6 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 1795 | |
| 12 | 4U52|1|6 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 | |
| 13 | 4U51|1|6 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 14 | 4U55|1|6 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 15 | 4U4Z|1|6 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 16 | 5MEI|1|6 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 1783 | |
| 17 | 5ON6|1|6 | Crystal structure of haemanthamine bound to the 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1783 | |
| 18 | 6HHQ|1|sR | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1783 | |
| 19 | 5TBW|1|sR | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1783 | |
| 20 | 4U4Y|1|6 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 21 | 4U3M|1|6 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 | |
| 22 | 4U4R|1|6 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1795 | |
| 23 | 4U3U|1|6 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1795 | |
| 24 | 4U6F|1|6 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 25 | 4U3N|1|6 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 26 | 5TGA|1|6 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 1795 | |
| 27 | 5LYB|1|6 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 1795 | |
| 28 | 4V88|1|A6 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1795 | |
| 29 | 5I4L|1|6 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 30 | 4U4N|1|6 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 31 | 4U4U|1|6 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 | |
| 32 | 4U4Q|1|6 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 | |
| 33 | 4U50|1|6 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 34 | 4U53|1|6 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1795 | |
| 35 | 4U4O|1|6 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.6 | 1791 | |
| 36 | 5NDV|1|6 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1683 | |
| 37 | 4V7R|1|A1 | Yeast 80S ribosome. | X-RAY DIFFRACTION | 4 | 1789 | |
| 38 | 5NDV|1|2 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1712 | |
| 39 | 5NDG|1|2 | Crystal structure of geneticin (G418) bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.7 | 1688 | |
| 40 | 5NDW|1|2 | Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.7 | 1770 | |
| 41 | 5OBM|1|2 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.4 | 1712 | |
| 42 | 4U4O|1|2 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.6 | 1750 | |
| 43 | 5DAT|1|2 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 1781 | |
| 44 | 5DGF|1|2 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 1781 | |
| 45 | 5DGE|1|2 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 1781 | |
| 46 | 5DC3|1|2 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 1781 | |
| 47 | 5DGV|1|2 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 1781 | |
| 48 | 5LYB|1|2 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 1781 | |
| 49 | 4V88|1|A2 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1781 | |
| 50 | 5TGA|1|2 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 1781 | |
| 51 | 5I4L|1|2 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 | |
| 52 | 4U4Q|1|2 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 | |
| 53 | 4U4U|1|2 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 | |
| 54 | 4U4N|1|2 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1750 | |
| 55 | 4U3N|1|2 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 56 | 4U6F|1|2 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 | |
| 57 | 4U3U|1|2 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1750 | |
| 58 | 4U4R|1|2 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1750 | |
| 59 | 4U3M|1|2 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 | |
| 60 | 4U4Y|1|2 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 61 | 4U4Z|1|2 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1750 | |
| 62 | 4U53|1|2 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1750 | |
| 63 | 4U50|1|2 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 64 | 4U51|1|2 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 65 | 4U55|1|2 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 66 | 4U52|1|2 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 | |
| 67 | 5ON6|1|A | Crystal structure of haemanthamine bound to the 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 | |
| 68 | 5MEI|1|A | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 1781 | |
| 69 | 6HHQ|1|A | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 | |
| 70 | 5TBW|1|A | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1781 | |
| 71 | 4U56|1|2 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 1750 | |
| 72 | 5TGM|1|2 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 1781 | |
| 73 | 5JUP|1|A | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | ELECTRON MICROSCOPY | 3.5 | 1781 | |
| 74 | 5JUT|1|A | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit) | ELECTRON MICROSCOPY | 4 | 1781 | |
| 75 | 5JUO|1|A | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit) | ELECTRON MICROSCOPY | 4 | 1781 | |
| 76 | 6GQV|1|2 | Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP) | ELECTRON MICROSCOPY | 4 | 1776 | |
| 77 | 6GQB|1|2 | Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin) | ELECTRON MICROSCOPY | 3.9 | 1776 | |
| 78 | 5M1J|1|22 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | ELECTRON MICROSCOPY | 3.3 | 1781 | |
| 79 | 5JUU|1|A | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit) | ELECTRON MICROSCOPY | 4 | 1781 | |
| 80 | 5MC6|1|2 | Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae | ELECTRON MICROSCOPY | 3.8 | 1767 | |
| 81 | 5LL6|1|2 | Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation | ELECTRON MICROSCOPY | 3.9 | 1325 | |
| 82 | 6EML|1|2 | Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae | ELECTRON MICROSCOPY | 3.6 | 1675 | |
| 83 | 6FAI|1|2 | Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit | ELECTRON MICROSCOPY | 3.4 | 1775 | |
| 84 | 5WLC|1|L1+ 5WLC|1|L0+ 5WLC|1|L2 | The complete structure of the small subunit processome | ELECTRON MICROSCOPY | 3.8 | 1682 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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