NR_4.0_03510.67

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	8P9A\|1\|sR (rep)	Small subunit ribosomal RNA	16S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	80S yeast ribosome in complex with Methyllissoclimide	X-ray diffraction	2.9	1783	2024-11-27
2	8P9A\|1\|A	Small subunit ribosomal RNA	16S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	80S yeast ribosome in complex with Methyllissoclimide	X-ray diffraction	2.9	1741	2024-11-27
3	5TBW\|1\|sR	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-ray diffraction	3	1783	2017-07-26
4	4V88\|1\|A6	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	1795	2014-07-09
5	8PNN\|1\|sR	Small subunit ribosomal RNA	16S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	80S yeast ribosome in complex with Bromolissoclimide	X-ray diffraction	2.9	1783	2025-05-28
6	4V88\|1\|A2	Small subunit ribosomal RNA	18S RIBOSOMAL RNA	Saccharomyces cerevisiae	Eukarya	RF01960	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	1781	2014-07-09
7	5TBW\|1\|A	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-ray diffraction	3	1781	2017-07-26
8	8P4V\|1\|sR	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	80S yeast ribosome in complex with HaterumaimideQ	X-ray diffraction	3.16	1783	2024-10-16
9	8PNN\|1\|A	Small subunit ribosomal RNA	16S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	80S yeast ribosome in complex with Bromolissoclimide	X-ray diffraction	2.9	1722	2025-05-28
10	8P4V\|1\|A	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	80S yeast ribosome in complex with HaterumaimideQ	X-ray diffraction	3.16	1781	2024-10-16
11	7OSA\|1\|18S	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-ray diffraction	3	1717	2021-12-08
12	6HHQ\|1\|sR	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-ray diffraction	3.1	1783	2019-02-20
13	5OBM\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-ray diffraction	3.4	1739	2017-12-13
14	5I4L\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	1795	2016-06-22
15	5MEI\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Agelastatin A bound to the 80S ribosome	X-ray diffraction	3.5	1783	2017-06-28
16	5NDW\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-ray diffraction	3.7	1736	2017-12-13
17	5LYB\|1\|6	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-ray diffraction	3.25	1795	2016-11-23
18	5I4L\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	1781	2016-06-22
19	5OBM\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-ray diffraction	3.4	1712	2017-12-13
20	5MEI\|1\|A	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Agelastatin A bound to the 80S ribosome	X-ray diffraction	3.5	1781	2017-06-28
21	7OSM\|1\|18S	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-ray diffraction	3	1732	2021-12-08
22	5ON6\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of haemanthamine bound to the 80S ribosome	X-ray diffraction	3.1	1783	2018-02-28
23	6HHQ\|1\|A	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-ray diffraction	3.1	1781	2019-02-20
24	5NDW\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-ray diffraction	3.7	1770	2017-12-13
25	5LYB\|1\|2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-ray diffraction	3.25	1781	2016-11-23
26	5ON6\|1\|A	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of haemanthamine bound to the 80S ribosome	X-ray diffraction	3.1	1781	2018-02-28
27	5NDV\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-ray diffraction	3.3	1683	2017-12-13
28	5NDV\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-ray diffraction	3.3	1712	2017-12-13
29	5FCJ\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.1	1795	2016-05-11
30	5NDG\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-ray diffraction	3.7	1700	2017-12-13
31	5NDG\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-ray diffraction	3.7	1688	2017-12-13
32	5FCJ\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.1	1781	2016-05-11
33	5TGM\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.5	1795	2017-01-18
34	5TGM\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.5	1781	2017-01-18
35	4V7R\|1\|A1	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Yeast 80S ribosome.	X-ray diffraction	4	1789	2014-07-09
36	4V7R\|1\|C1	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Yeast 80S ribosome.	X-ray diffraction	4	1789	2014-07-09
37	5DAT\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-ray diffraction	3.15	1795	2016-08-31
38	5TGA\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.3	1795	2016-11-23
39	5DGE\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-ray diffraction	3.45	1795	2017-01-25
40	5DGV\|1\|6	Small subunit ribosomal RNA	Saccharomyces cerevisiae S288c RDN37-1 miscRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.1	1795	2016-12-14
41	5DGF\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.3	1795	2016-12-14
42	5DC3\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	1795	2016-06-01
43	5DAT\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-ray diffraction	3.15	1781	2016-08-31
44	5TGA\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.3	1781	2016-11-23
45	5DGV\|1\|2	Small subunit ribosomal RNA	Saccharomyces cerevisiae S288c RDN37-1 miscRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.1	1781	2016-12-14
46	5DGE\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-ray diffraction	3.45	1781	2017-01-25
47	5FCI\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.4	1795	2016-05-11
48	5DGF\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.3	1781	2016-12-14
49	5DC3\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	1781	2016-06-01
50	5FCI\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.4	1781	2016-05-11
51	8T2Y\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE	Electron microscopy	2.2	1782	2024-12-11
52	8CCS\|1\|c	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex	Electron microscopy	1.97	1604	2023-09-20
53	8EVP\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I	Electron microscopy	2.38	1782	2023-09-06
54	8CDR\|1\|c	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.04	1608	2023-09-20
55	8CEH\|1\|c	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.05	1608	2023-09-20
56	7ZW0\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA (RDN18-1)	Saccharomyces cerevisiae W303	Eukarya	RF01960	FAP-80S Complex - Rotated state	Electron microscopy	2.4	1765	2022-10-05
57	8T2Z\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST	Electron microscopy	2.4	1757	2024-12-11
58	8EWC\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II	Electron microscopy	2.45	1782	2023-09-06
59	8T2X\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE	Electron microscopy	2.46	1782	2024-12-11
60	8BN3\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Yeast 80S, ES7s delta, eIF5A, Stm1 containing	Electron microscopy	2.4	1737	2024-01-10
61	8EUB\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I	Electron microscopy	2.52	1782	2023-09-06
62	7ZUX\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Collided ribosome in a disome unit from S. cerevisiae	Electron microscopy	2.5	1769	2023-02-22
63	8ZHC\|1\|S2	Small subunit ribosomal RNA	chain 2 18S rRNA (1799-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF01960	pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV	Electron microscopy	2.3	1771	2025-05-21
64	8CGN\|1\|c	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Non-rotated 80S S. cerevisiae ribosome with ligands	Electron microscopy	2.28	1624	2023-09-20
65	7MPJ\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Stm1 bound vacant 80S structure isolated from nop1-D243A	Electron microscopy	2.7	1781	2022-05-11
66	8EVQ\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I	Electron microscopy	2.72	1782	2023-09-06
67	6LQP\|1\|SA+ 6LQP\|1\|5A+ 6LQP\|1\|3A	Small subunit ribosomal RNA + U3 small nucleolar RNA	18S pre-rRNA, 5' ETS, U3 snoRNA	Saccharomyces cerevisiae	Eukarya	RF01960 + RF01846	Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)	Electron microscopy	3.2	2023	2020-09-16
68	6T4Q\|1\|C2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.	Electron microscopy	2.6	1771	2019-12-25
69	8CIV\|1\|c	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.47	1622	2023-09-20
70	8ZHB\|1\|S2	Small subunit ribosomal RNA	chain 2 18S rRNA (1799-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF01960	80S ribosome with A/A P/E tRNA and mRNA of WNV	Electron microscopy	2.6	1771	2025-05-21
71	8EWB\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III	Electron microscopy	2.87	1782	2023-09-06
72	8T30\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated	Electron microscopy	2.88	1782	2024-12-11
73	6WOO\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP	Electron microscopy	2.9	1780	2020-09-23
74	4U4R\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	1795	2014-10-22
75	8T3A\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2	Electron microscopy	2.86	1757	2024-12-11
76	8CG8\|1\|c	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.57	1608	2023-09-20
77	8ZH3\|1\|S2	Small subunit ribosomal RNA	chain 2 18S rRNA (1771-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF01960	80S ribosome with A/P-P/E tRNA and mRNA of WNV	Electron microscopy	2.7	1771	2025-05-21
78	9F9S\|1\|S1	Small subunit ribosomal RNA	Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)	Saccharomyces cerevisiae	Eukarya	RF01960	Yeast SDD1 Disome with Mbf1	Electron microscopy	2.9	1771	2024-12-04
79	6TB3\|1\|2	Small subunit ribosomal RNA	Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex	Electron microscopy	2.8	1771	2020-04-22
80	6SNT\|1\|2	Small subunit ribosomal RNA	Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Yeast 80S ribosome stalled on SDD1 mRNA.	Electron microscopy	2.8	1771	2020-03-04
81	9F9S\|1\|R1	Small subunit ribosomal RNA	Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)	Saccharomyces cerevisiae	Eukarya	RF01960	Yeast SDD1 Disome with Mbf1	Electron microscopy	2.9	1758	2024-12-04
82	6KE6\|1\|SA+ 6KE6\|1\|5A+ 6KE6\|1\|3A	Small subunit ribosomal RNA + U3 small nucleolar RNA	18S rRNA, 5' ETS, U3 snoRNA	Saccharomyces cerevisiae	Eukarya	RF01960 + RF01846	3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome	Electron microscopy	3.4	2007	2020-08-05
83	4U3U\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	1795	2014-10-22
84	8T3D\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III	Electron microscopy	2.95	1757	2024-12-11
85	8ZGR\|1\|S2	Small subunit ribosomal RNA	chain 2 18S rRNA (1800-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF01960	80S ribosome with A/A tRNA and mRNA of WNV	Electron microscopy	2.7	1771	2025-05-21
86	4U4R\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	1750	2014-10-22
87	8K82\|1\|C2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA	Electron microscopy	3	1771	2024-07-10
88	7A1G\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex	Electron microscopy	3	1771	2020-10-14
89	6ZVI\|1\|h	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Mbf1-ribosome complex	Electron microscopy	3	1758	2020-09-09
90	7N8B\|1\|B5	Small subunit ribosomal RNA	18S RIBOSOMAL RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cycloheximide bound vacant 80S structure isolated from cbf5-D95A	Electron microscopy	3.05	1783	2022-05-11
91	7MPI\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Stm1 bound vacant 80S structure isolated from cbf5-D95A	Electron microscopy	3.05	1781	2022-05-11
92	8CF5\|1\|c	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.71	1604	2023-09-20
93	8CDL\|1\|c	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex	Electron microscopy	2.72	1604	2023-09-20
94	8CAH\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae W303	Eukarya	RF01960	Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex	Electron microscopy	3	1745	2023-05-24
95	8T3E\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV	Electron microscopy	3.04	1757	2024-12-11
96	4U3U\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	1750	2014-10-22
97	8ZGY\|1\|S2	Small subunit ribosomal RNA	chain 2 18S rRNA (1799-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF01960	80S ribosome with P/E tRNA and mRNA of WNV	Electron microscopy	2.8	1771	2025-05-21
98	8T3B\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I	Electron microscopy	3.08	1757	2024-12-11
99	4U3M\|1\|6	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	1795	2014-10-22
100	8T3F\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V	Electron microscopy	3.09	1757	2024-12-11
101	4U4Q\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	1795	2014-10-22
102	4U4U\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	1795	2014-10-22
103	4U52\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	1795	2014-10-22
104	8Z70\|1\|2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF01960	State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding	Electron microscopy	3.2	1771	2024-12-11
105	4U3M\|1\|2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	1750	2014-10-22
106	8UT0\|1\|2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA	Electron microscopy	3.22	1771	2024-11-06
107	7RR5\|1\|C2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of ribosomal complex bound with Rbg1/Tma46	Electron microscopy	3.23	1771	2021-11-10
108	4U6F\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	1795	2014-10-22
109	8C01\|1\|2	Small subunit ribosomal RNA	18S rRNA precursor	Saccharomyces cerevisiae	Eukarya	RF01960	Enp1TAP_A population of yeast small ribosomal subunit precursors	Electron microscopy	2.7	1545	2022-12-28
110	4U4N\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	1795	2014-10-22
111	4U52\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	1750	2014-10-22
112	4U4U\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	1750	2014-10-22
113	4U4Q\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	1750	2014-10-22
114	6Q8Y\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex	Electron microscopy	3.1	1767	2019-03-13
115	4U6F\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	1781	2014-10-22
116	4U4Z\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	1795	2014-10-22
117	7B7D\|1\|2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF01960	Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs	Electron microscopy	3.3	1771	2021-03-10
118	8CAS\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae W303	Eukarya	RF01960	Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)	Electron microscopy	3.3	1763	2023-05-24
119	4U4Y\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	1795	2014-10-22
120	4U3N\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	1795	2014-10-22
121	6XIR\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress	Electron microscopy	3.2	1708	2020-08-26
122	6SV4\|1\|2b	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	The cryo-EM structure of SDD1-stalled collided trisome.	Electron microscopy	3.3	1758	2020-03-04
123	6SV4\|1\|2c	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	The cryo-EM structure of SDD1-stalled collided trisome.	Electron microscopy	3.3	1758	2020-03-04
124	8K2D\|1\|C2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A	Electron microscopy	3.2	1700	2024-07-10
125	4U55\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	1795	2014-10-22
126	6T7T\|1\|C2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of yeast 80S ribosome stalled on poly(A) tract.	Electron microscopy	3.1	1771	2019-12-25
127	4U4Z\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	1750	2014-10-22
128	5M1J\|1\|22	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Nonstop ribosomal complex bound with Dom34 and Hbs1	Electron microscopy	3.3	1781	2017-01-18
129	4U4N\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	1750	2014-10-22
130	8EVT\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map	Electron microscopy	2.2	1173	2023-09-06
131	4U50\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	1795	2014-10-22
132	6T7I\|1\|C2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.	Electron microscopy	3.2	1771	2019-12-25
133	4U51\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	1795	2014-10-22
134	8XU8\|1\|2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF01960	State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation	Electron microscopy	3.4	1767	2024-12-11
135	4U3N\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	1750	2014-10-22
136	8CKU\|1\|c	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin	Electron microscopy	3.11	1604	2023-09-20
137	7ZPQ\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)	Electron microscopy	3.47	1771	2023-02-22
138	8UTI\|1\|E	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Eukaryotic 80S ribosome with Reh1 and A/P site tRNA	Electron microscopy	3.13	1597	2024-11-06
139	4U4Y\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	1750	2014-10-22
140	4U51\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	1750	2014-10-22
141	6S47\|1\|BA	Small subunit ribosomal RNA	18S rRNA (1707-MER)	Saccharomyces cerevisiae	Eukarya	RF01960	Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1	Electron microscopy	3.28	1707	2019-07-24
142	4U55\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	1750	2014-10-22
143	6TNU\|1\|2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.	Electron microscopy	3.1	1771	2020-04-22
144	6LQU\|1\|SA+ 6LQU\|1\|5A+ 6LQU\|1\|3A	Small subunit ribosomal RNA + U3 small nucleolar RNA	18S pre-rRNA, 5' ETS, U3 snoRNA	Saccharomyces cerevisiae	Eukarya	RF01960 + RF01846	Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)	Electron microscopy	3.7	1940	2020-09-16
145	6FAI\|1\|2	Small subunit ribosomal RNA	20S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit	Electron microscopy	3.4	1775	2018-02-28
146	5JUP\|1\|A	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)	Electron microscopy	3.5	1781	2016-10-05
147	6Z6K\|1\|C2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes	Electron microscopy	3.4	1700	2020-07-29
148	6Z6J\|1\|C2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition	Electron microscopy	3.4	1700	2020-07-29
149	4U53\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	1795	2014-10-22
150	4U50\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	1750	2014-10-22
151	6RBD\|1\|2	Small subunit ribosomal RNA	20S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles	Electron microscopy	3.47	1777	2019-06-26
152	8Y0U\|1\|C2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	dormant ribosome with STM1	Electron microscopy	3.59	1771	2024-02-07
153	8Z71\|1\|2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF01960	State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding	Electron microscopy	3.6	1771	2024-12-11
154	6ZQC\|1\|D3+ 6ZQC\|1\|D2+ 6ZQC\|1\|D4	Small subunit ribosomal RNA + U3 small nucleolar RNA	18S rRNA, 5ETS RNA, U3 snoRNA	Saccharomyces cerevisiae	Eukarya	RF01960 + RF01846	Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1	Electron microscopy	3.8	2003	2020-09-23
155	4U53\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	1750	2014-10-22
156	6SV4\|1\|2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	The cryo-EM structure of SDD1-stalled collided trisome.	Electron microscopy	3.3	1758	2020-03-04
157	8C00\|1\|2	Small subunit ribosomal RNA	18S rRNA precursor	Saccharomyces cerevisiae	Eukarya	RF01960	Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21	Electron microscopy	2.9	1425	2022-12-28
158	4U56\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	1795	2014-10-22
159	8BQX\|1\|2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Yeast 80S ribosome in complex with Map1 (conformation 2)	Electron microscopy	3.8	1771	2023-03-22
160	8EVS\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II	Electron microscopy	2.62	1173	2023-09-06
161	6ZQB\|1\|D3+ 6ZQB\|1\|D2+ 6ZQB\|1\|D4	Small subunit ribosomal RNA + U3 small nucleolar RNA	18S rRNA, 5ETS RNA, U3 snoRNA	Saccharomyces cerevisiae	Eukarya	RF01960 + RF01846	Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2	Electron microscopy	3.9	1895	2020-09-23
162	4U56\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	1750	2014-10-22
163	8T3C\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II	Electron microscopy	3.86	1757	2024-12-11
164	7NRC\|1\|S2	Small subunit ribosomal RNA	18S rRNA (1771-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF01960	Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A	Electron microscopy	3.9	1771	2021-05-05
165	8BQD\|1\|2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Yeast 80S ribosome in complex with Map1 (conformation 1)	Electron microscopy	3.9	1771	2023-03-22
166	8YLD\|1\|2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF01960	State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation	Electron microscopy	3.9	1771	2024-12-11
167	8YLR\|1\|2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF01960	State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation	Electron microscopy	3.9	1771	2024-12-11
168	7SUK\|1\|8+ 7SUK\|1\|L0+ 7SUK\|1\|L2	Small subunit ribosomal RNA + U3 small nucleolar RNA	18S pre-rRNA, 5' ETS, U3 snoRNA	Saccharomyces cerevisiae	Eukarya	RF01960 + RF01846	Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells	Electron microscopy	3.99	1849	2022-07-06
169	5MC6\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae	Electron microscopy	3.8	1767	2017-01-18
170	6T83\|1\|2b	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of yeast disome (di-ribosome) stalled on poly(A) tract.	Electron microscopy	4	1771	2019-12-25
171	6T83\|1\|a	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of yeast disome (di-ribosome) stalled on poly(A) tract.	Electron microscopy	4	1758	2019-12-25
172	5JUO\|1\|A	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)	Electron microscopy	4	1781	2016-10-05
173	5JUT\|1\|A	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)	Electron microscopy	4	1781	2016-10-05
174	8EVR\|1\|B5	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II	Electron microscopy	2.87	1173	2023-09-06
175	6RBE\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles	Electron microscopy	3.8	1750	2019-06-26
176	5JUU\|1\|A	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)	Electron microscopy	4	1781	2016-10-05
177	6EML\|1\|2	Small subunit ribosomal RNA	pre-18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae	Electron microscopy	3.6	1675	2017-11-29
178	5WLC\|1\|L1+ 5WLC\|1\|L0+ 5WLC\|1\|L2	Small subunit ribosomal RNA + U3 small nucleolar RNA	18S pre-rRNA, 5' ETS, U3 snoRNA	Saccharomyces cerevisiae	Eukarya	RF01960 + RF01846	The complete structure of the small subunit processome	Electron microscopy	3.8	1682	2017-09-27
179	8CMJ\|1\|c	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin	Electron microscopy	3.79	1608	2023-09-20
180	6GQB\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)	Electron microscopy	3.9	1776	2018-07-11
181	6Y7C\|1\|2	Small subunit ribosomal RNA	20S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)	Electron microscopy	3.8	1735	2020-03-18
182	7D4I\|1\|SA+ 7D4I\|1\|3A+ 7D4I\|1\|5A	Small subunit ribosomal RNA + U3 small nucleolar RNA	18S rRNA, 5' ETS, U3 snoRNA	Saccharomyces cerevisiae S288C	Eukarya	RF01960 + RF01846	Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)	Electron microscopy	4	1671	2021-10-06
183	6LQS\|1\|SA+ 6LQS\|1\|3A+ 6LQS\|1\|5A	Small subunit ribosomal RNA + U3 small nucleolar RNA	18S pre-rRNA, 5' ETS, U3 snoRNA	Saccharomyces cerevisiae	Eukarya	RF01960 + RF01846	Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)	Electron microscopy	3.8	1635	2020-09-16
184	8C83\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex	Electron microscopy	3	1177	2023-05-24
185	6GQV\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)	Electron microscopy	4	1776	2018-07-11
186	6ZQD\|1\|D3+ 6ZQD\|1\|D4+ 6ZQD\|1\|D2	Small subunit ribosomal RNA + U3 small nucleolar RNA	18S rRNA, 5ETS RNA, U3 snoRNA	Saccharomyces cerevisiae	Eukarya	RF01960 + RF01846	Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1	Electron microscopy	3.8	1713	2020-09-23
187	7AJU\|1\|D3+ 7AJU\|1\|D4+ 7AJU\|1\|D2	Small subunit ribosomal RNA + U3 small nucleolar RNA	18S rRNA, 5'ETS RNA, U3 snoRNA	Saccharomyces cerevisiae S288C	Eukarya	RF01960 + RF01846	Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)	Electron microscopy	3.8	1713	2020-12-30
188	4U4O\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-ray diffraction	3.6	1791	2014-10-22
189	7WTR\|1\|C2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3	Electron microscopy	3.5	1298	2022-10-19
190	4U4O\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-ray diffraction	3.6	1750	2014-10-22
191	6ZQG\|1\|D3	Small subunit ribosomal RNA	18S rRNA, U3 snoRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C	Electron microscopy	3.5	1387	2020-09-23
192	7WTN\|1\|C2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2)	Electron microscopy	3.4	1200	2022-10-19
193	7WTL\|1\|C2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D	Electron microscopy	3.3	1102	2022-10-19
194	7WTO\|1\|C2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)	Electron microscopy	3.5	1200	2022-10-19
195	7WTP\|1\|C2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)	Electron microscopy	3.8	1255	2022-10-19
196	7WTQ\|1\|C2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (without Rps2)	Electron microscopy	3.7	1255	2022-10-19
197	5LL6\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation	Electron microscopy	3.9	1325	2017-04-12
198	7WTM\|1\|C2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E	Electron microscopy	3.5	1106	2022-10-19

Release history

Release	3.389
Date	2025-05-28

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	4V7R\|1\|C1	Yeast 80S ribosome.	X-RAY DIFFRACTION	4	1789
2	5NDV\|1\|6	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	1683
3	8P4V\|1\|sR	80S yeast ribosome in complex with HaterumaimideQ	X-RAY DIFFRACTION	3.16	1783
4	8PNN\|1\|sR	80S yeast ribosome in complex with Bromolissoclimide	X-RAY DIFFRACTION	2.9	1783
5	8P9A\|1\|sR	80S yeast ribosome in complex with Methyllissoclimide	X-RAY DIFFRACTION	2.9	1783
6	5MEI\|1\|6	Crystal structure of Agelastatin A bound to the 80S ribosome	X-RAY DIFFRACTION	3.5	1783
7	5ON6\|1\|6	Crystal structure of haemanthamine bound to the 80S ribosome	X-RAY DIFFRACTION	3.1	1783
8	6HHQ\|1\|sR	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1783
9	5TBW\|1\|sR	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1783
10	5DGV\|1\|6	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.1	1795
11	5TGM\|1\|6	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.5	1795
12	4U56\|1\|6	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	1795
13	4U53\|1\|6	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	1795
14	4U50\|1\|6	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1795
15	4U52\|1\|6	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1795
16	5FCJ\|1\|6	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.1	1795
17	5FCI\|1\|6	Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.4	1795
18	4U51\|1\|6	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1795
19	4U55\|1\|6	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1795
20	4U4Z\|1\|6	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1795
21	4U4Q\|1\|6	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1795
22	4U4U\|1\|6	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1795
23	4U4N\|1\|6	Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1795
24	5I4L\|1\|6	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1795
25	5TGA\|1\|6	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.3	1795
26	5LYB\|1\|6	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-RAY DIFFRACTION	3.25	1795
27	4V88\|1\|A6	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	1795
28	4U6F\|1\|6	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1795
29	4U3N\|1\|6	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1795
30	4U3U\|1\|6	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	1795
31	4U4R\|1\|6	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	1795
32	4U3M\|1\|6	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1795
33	4U4Y\|1\|6	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1795
34	5DC3\|1\|6	Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	1795
35	5DGE\|1\|6	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-RAY DIFFRACTION	3.45	1795
36	5DGF\|1\|6	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.3	1795
37	5DAT\|1\|6	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-RAY DIFFRACTION	3.15	1795
38	4U4O\|1\|6	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.6	1791
39	5OBM\|1\|6	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.4	1739
40	5NDG\|1\|6	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	1700
41	5NDW\|1\|6	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	1736
42	8K2D\|1\|C2	Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A	ELECTRON MICROSCOPY	3.2	1700
43	4V7R\|1\|A1	Yeast 80S ribosome.	X-RAY DIFFRACTION	4	1789
44	5NDV\|1\|2	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	1712
45	5OBM\|1\|2	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.4	1712
46	8P4V\|1\|A	80S yeast ribosome in complex with HaterumaimideQ	X-RAY DIFFRACTION	3.16	1781
47	8PNN\|1\|A	80S yeast ribosome in complex with Bromolissoclimide	X-RAY DIFFRACTION	2.9	1722
48	8P9A\|1\|A	80S yeast ribosome in complex with Methyllissoclimide	X-RAY DIFFRACTION	2.9	1741
49	6HHQ\|1\|A	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1781
50	4U56\|1\|2	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	1750
51	5FCI\|1\|2	Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.4	1781
52	5FCJ\|1\|2	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.1	1781
53	5TGM\|1\|2	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.5	1781
54	5MEI\|1\|A	Crystal structure of Agelastatin A bound to the 80S ribosome	X-RAY DIFFRACTION	3.5	1781
55	5ON6\|1\|A	Crystal structure of haemanthamine bound to the 80S ribosome	X-RAY DIFFRACTION	3.1	1781
56	4U52\|1\|2	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1750
57	4U50\|1\|2	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1750
58	4U53\|1\|2	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	1750
59	4U4Z\|1\|2	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1750
60	4U55\|1\|2	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1750
61	4U51\|1\|2	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1750
62	4U4Q\|1\|2	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1750
63	4U4U\|1\|2	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1750
64	4U4N\|1\|2	Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1750
65	5I4L\|1\|2	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1781
66	4U4Y\|1\|2	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1750
67	4U3N\|1\|2	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1750
68	4U3M\|1\|2	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1750
69	4U4R\|1\|2	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	1750
70	4U3U\|1\|2	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	1750
71	4U6F\|1\|2	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1781
72	5TGA\|1\|2	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.3	1781
73	4V88\|1\|A2	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	1781
74	5LYB\|1\|2	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-RAY DIFFRACTION	3.25	1781
75	5DGV\|1\|2	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.1	1781
76	5TBW\|1\|A	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1781
77	5DC3\|1\|2	Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	1781
78	5DGE\|1\|2	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-RAY DIFFRACTION	3.45	1781
79	5DGF\|1\|2	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.3	1781
80	5DAT\|1\|2	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-RAY DIFFRACTION	3.15	1781
81	4U4O\|1\|2	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.6	1750
82	5NDW\|1\|2	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	1770
83	5NDG\|1\|2	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	1688
84	8BN3\|1\|2	Yeast 80S, ES7s delta, eIF5A, Stm1 containing	ELECTRON MICROSCOPY	2.4	1737
85	5JUO\|1\|A	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)	ELECTRON MICROSCOPY	4	1781
86	5JUT\|1\|A	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)	ELECTRON MICROSCOPY	4	1781
87	5JUP\|1\|A	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)	ELECTRON MICROSCOPY	3.5	1781
88	8ZGR\|1\|S2	80S ribosome with A/A tRNA and mRNA of WNV	ELECTRON MICROSCOPY	2.7	1771
89	8Y0U\|1\|C2	dormant ribosome with STM1	ELECTRON MICROSCOPY	3.59	1771
90	8YLR\|1\|2	State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation	ELECTRON MICROSCOPY	3.9	1771
91	8EVQ\|1\|B5	Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I	ELECTRON MICROSCOPY	2.72	1782
92	8EUB\|1\|B5	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I	ELECTRON MICROSCOPY	2.52	1782
93	8CMJ\|1\|c	Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin	ELECTRON MICROSCOPY	3.79	1608
94	8CIV\|1\|c	Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.47	1622
95	8CEH\|1\|c	Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.05	1608
96	8CDR\|1\|c	Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.04	1608
97	8CG8\|1\|c	Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.57	1608
98	8T3A\|1\|B5	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2	ELECTRON MICROSCOPY	2.86	1757
99	8T3B\|1\|B5	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I	ELECTRON MICROSCOPY	3.08	1757
100	7OSM\|1\|18S	Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-RAY DIFFRACTION	3	1732
101	7A1G\|1\|2	Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex	ELECTRON MICROSCOPY	3	1771
102	8CAH\|1\|2	Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex	ELECTRON MICROSCOPY	3	1745
103	6GQV\|1\|2	Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)	ELECTRON MICROSCOPY	4	1776
104	6GQB\|1\|2	Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)	ELECTRON MICROSCOPY	3.9	1776
105	8T30\|1\|B5	Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated	ELECTRON MICROSCOPY	2.88	1782
106	8T3F\|1\|B5	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V	ELECTRON MICROSCOPY	3.09	1757
107	8T3E\|1\|B5	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV	ELECTRON MICROSCOPY	3.04	1757
108	8T3D\|1\|B5	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III	ELECTRON MICROSCOPY	2.95	1757
109	8T3C\|1\|B5	Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II	ELECTRON MICROSCOPY	3.86	1757
110	7MPI\|1\|B5	Stm1 bound vacant 80S structure isolated from cbf5-D95A	ELECTRON MICROSCOPY	3.05	1781
111	7MPJ\|1\|B5	Stm1 bound vacant 80S structure isolated from nop1-D243A	ELECTRON MICROSCOPY	2.7	1781
112	7N8B\|1\|B5	Cycloheximide bound vacant 80S structure isolated from cbf5-D95A	ELECTRON MICROSCOPY	3.05	1783
113	8EVP\|1\|B5	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I	ELECTRON MICROSCOPY	2.38	1782
114	8EWC\|1\|B5	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II	ELECTRON MICROSCOPY	2.45	1782
115	8EVS\|1\|B5	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II	ELECTRON MICROSCOPY	2.62	1173
116	8EVR\|1\|B5	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II	ELECTRON MICROSCOPY	2.87	1173
117	8EVT\|1\|B5	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map	ELECTRON MICROSCOPY	2.2	1173
118	8EWB\|1\|B5	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III	ELECTRON MICROSCOPY	2.87	1782
119	8T2Y\|1\|B5	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE	ELECTRON MICROSCOPY	2.2	1782
120	8T2X\|1\|B5	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE	ELECTRON MICROSCOPY	2.46	1782
121	8T2Z\|1\|B5	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST	ELECTRON MICROSCOPY	2.4	1757
122	8ZHC\|1\|S2	pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV	ELECTRON MICROSCOPY	2.3	1771
123	8ZHB\|1\|S2	80S ribosome with A/A P/E tRNA and mRNA of WNV	ELECTRON MICROSCOPY	2.6	1771
124	8ZH3\|1\|S2	80S ribosome with A/P-P/E tRNA and mRNA of WNV	ELECTRON MICROSCOPY	2.7	1771
125	8ZGY\|1\|S2	80S ribosome with P/E tRNA and mRNA of WNV	ELECTRON MICROSCOPY	2.8	1771
126	6Q8Y\|1\|2	Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex	ELECTRON MICROSCOPY	3.1	1767
127	5MC6\|1\|2	Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae	ELECTRON MICROSCOPY	3.8	1767
128	5LL6\|1\|2	Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation	ELECTRON MICROSCOPY	3.9	1325
129	8UTI\|1\|E	Eukaryotic 80S ribosome with Reh1 and A/P site tRNA	ELECTRON MICROSCOPY	3.13	1597
130	8UT0\|1\|2	Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA	ELECTRON MICROSCOPY	3.22	1771
131	7NRC\|1\|S2	Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A	ELECTRON MICROSCOPY	3.9	1771
132	6TNU\|1\|2	Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.	ELECTRON MICROSCOPY	3.1	1771
133	8BQX\|1\|2	Yeast 80S ribosome in complex with Map1 (conformation 2)	ELECTRON MICROSCOPY	3.8	1771
134	8BQD\|1\|2	Yeast 80S ribosome in complex with Map1 (conformation 1)	ELECTRON MICROSCOPY	3.9	1771
135	8XU8\|1\|2	State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation	ELECTRON MICROSCOPY	3.4	1767
136	7RR5\|1\|C2	Structure of ribosomal complex bound with Rbg1/Tma46	ELECTRON MICROSCOPY	3.23	1771
137	7ZW0\|1\|2	FAP-80S Complex - Rotated state	ELECTRON MICROSCOPY	2.4	1765
138	8CAS\|1\|2	Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)	ELECTRON MICROSCOPY	3.3	1763
139	8C83\|1\|2	Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex	ELECTRON MICROSCOPY	3	1177
140	7ZPQ\|1\|2	Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)	ELECTRON MICROSCOPY	3.47	1771
141	9F9S\|1\|S1	Yeast SDD1 Disome with Mbf1	ELECTRON MICROSCOPY	2.9	1771
142	6T83\|1\|2b	Structure of yeast disome (di-ribosome) stalled on poly(A) tract.	ELECTRON MICROSCOPY	4	1771
143	6T7T\|1\|C2	Structure of yeast 80S ribosome stalled on poly(A) tract.	ELECTRON MICROSCOPY	3.1	1771
144	6T7I\|1\|C2	Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.	ELECTRON MICROSCOPY	3.2	1771
145	6T4Q\|1\|C2	Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.	ELECTRON MICROSCOPY	2.6	1771
146	6SNT\|1\|2	Yeast 80S ribosome stalled on SDD1 mRNA.	ELECTRON MICROSCOPY	2.8	1771
147	6TB3\|1\|2	yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex	ELECTRON MICROSCOPY	2.8	1771
148	8K82\|1\|C2	Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA	ELECTRON MICROSCOPY	3	1771
149	7B7D\|1\|2	Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs	ELECTRON MICROSCOPY	3.3	1771
150	8Z70\|1\|2	State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding	ELECTRON MICROSCOPY	3.2	1771
151	8Z71\|1\|2	State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding	ELECTRON MICROSCOPY	3.6	1771
152	8YLD\|1\|2	State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation	ELECTRON MICROSCOPY	3.9	1771
153	5M1J\|1\|22	Nonstop ribosomal complex bound with Dom34 and Hbs1	ELECTRON MICROSCOPY	3.3	1781
154	6S47\|1\|BA	Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1	ELECTRON MICROSCOPY	3.28	1707
155	6T83\|1\|a	Structure of yeast disome (di-ribosome) stalled on poly(A) tract.	ELECTRON MICROSCOPY	4	1758
156	6SV4\|1\|2	The cryo-EM structure of SDD1-stalled collided trisome.	ELECTRON MICROSCOPY	3.3	1758
157	5JUU\|1\|A	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)	ELECTRON MICROSCOPY	4	1781
158	6WOO\|1\|2	CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP	ELECTRON MICROSCOPY	2.9	1780
159	7OSA\|1\|18S	Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-RAY DIFFRACTION	3	1717
160	8CKU\|1\|c	Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin	ELECTRON MICROSCOPY	3.11	1604
161	8CDL\|1\|c	80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex	ELECTRON MICROSCOPY	2.72	1604
162	8CF5\|1\|c	Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.71	1604
163	8CCS\|1\|c	80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex	ELECTRON MICROSCOPY	1.97	1604
164	8CGN\|1\|c	Non-rotated 80S S. cerevisiae ribosome with ligands	ELECTRON MICROSCOPY	2.28	1624
165	6Z6K\|1\|C2	Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes	ELECTRON MICROSCOPY	3.4	1700
166	6Z6J\|1\|C2	Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition	ELECTRON MICROSCOPY	3.4	1700
167	7ZUX\|1\|2	Collided ribosome in a disome unit from S. cerevisiae	ELECTRON MICROSCOPY	2.5	1769
168	6SV4\|1\|2c	The cryo-EM structure of SDD1-stalled collided trisome.	ELECTRON MICROSCOPY	3.3	1758
169	6SV4\|1\|2b	The cryo-EM structure of SDD1-stalled collided trisome.	ELECTRON MICROSCOPY	3.3	1758
170	6ZVI\|1\|h	Mbf1-ribosome complex	ELECTRON MICROSCOPY	3	1758
171	9F9S\|1\|R1	Yeast SDD1 Disome with Mbf1	ELECTRON MICROSCOPY	2.9	1758
172	6XIR\|1\|2	Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress	ELECTRON MICROSCOPY	3.2	1708
173	6RBE\|1\|2	State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles	ELECTRON MICROSCOPY	3.8	1750
174	6EML\|1\|2	Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae	ELECTRON MICROSCOPY	3.6	1675
175	6Y7C\|1\|2	Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)	ELECTRON MICROSCOPY	3.8	1735
176	8C01\|1\|2	Enp1TAP_A population of yeast small ribosomal subunit precursors	ELECTRON MICROSCOPY	2.7	1545
177	8C00\|1\|2	Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21	ELECTRON MICROSCOPY	2.9	1425
178	6RBD\|1\|2	State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles	ELECTRON MICROSCOPY	3.47	1777
179	6FAI\|1\|2	Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit	ELECTRON MICROSCOPY	3.4	1775
180	7WTR\|1\|C2	Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3	ELECTRON MICROSCOPY	3.5	1298
181	7WTP\|1\|C2	Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)	ELECTRON MICROSCOPY	3.8	1255
182	7WTQ\|1\|C2	Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (without Rps2)	ELECTRON MICROSCOPY	3.7	1255
183	7WTN\|1\|C2	Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2)	ELECTRON MICROSCOPY	3.4	1200
184	7WTO\|1\|C2	Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)	ELECTRON MICROSCOPY	3.5	1200
185	7WTM\|1\|C2	Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E	ELECTRON MICROSCOPY	3.5	1106
186	7WTL\|1\|C2	Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D	ELECTRON MICROSCOPY	3.3	1102
187	6ZQG\|1\|D3	Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C	ELECTRON MICROSCOPY	3.5	1387
188	6ZQD\|1\|D3+ 6ZQD\|1\|D4+ 6ZQD\|1\|D2	Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1	ELECTRON MICROSCOPY	3.8	1713
189	7AJU\|1\|D3+ 7AJU\|1\|D4+ 7AJU\|1\|D2	Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)	ELECTRON MICROSCOPY	3.8	1713
190	7D4I\|1\|SA+ 7D4I\|1\|3A+ 7D4I\|1\|5A	Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)	ELECTRON MICROSCOPY	4	1671
191	6LQS\|1\|SA+ 6LQS\|1\|3A+ 6LQS\|1\|5A	Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)	ELECTRON MICROSCOPY	3.8	1635
192	6ZQC\|1\|D3+ 6ZQC\|1\|D2+ 6ZQC\|1\|D4	Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1	ELECTRON MICROSCOPY	3.8	2003
193	6ZQB\|1\|D3+ 6ZQB\|1\|D2+ 6ZQB\|1\|D4	Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2	ELECTRON MICROSCOPY	3.9	1895
194	6KE6\|1\|SA+ 6KE6\|1\|5A+ 6KE6\|1\|3A	3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome	ELECTRON MICROSCOPY	3.4	2007
195	6LQP\|1\|SA+ 6LQP\|1\|5A+ 6LQP\|1\|3A	Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)	ELECTRON MICROSCOPY	3.2	2023
196	6LQU\|1\|SA+ 6LQU\|1\|5A+ 6LQU\|1\|3A	Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)	ELECTRON MICROSCOPY	3.7	1940
197	5WLC\|1\|L1+ 5WLC\|1\|L0+ 5WLC\|1\|L2	The complete structure of the small subunit processome	ELECTRON MICROSCOPY	3.8	1682
198	7SUK\|1\|8+ 7SUK\|1\|L0+ 7SUK\|1\|L2	Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells	ELECTRON MICROSCOPY	3.99	1849

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_4.0_03510.67 Current

Release history

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