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Equivalence class NR_4.0_04576.2 Obsolete

Showing 1 to 15 of 15 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18EVP|1|EC (rep)Internal ribosome entry siteTaura syndrome virusHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IElectron microscopy2.381922023-09-06
28EWC|1|ECinternal ribosome entry site (IRES)Taura syndrome virusHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIElectron microscopy2.451922023-09-06
38EUB|1|ECTaura syndrome virus (TSV) internal ribosome entry site (IRES) RNATaura syndrome virusHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IElectron microscopy2.521952023-09-06
48EVQ|1|ECTaura syndrome virus (TSV) internal ribosome entry site (IRES) RNATaura syndrome virusHypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure IElectron microscopy2.722002023-09-06
58EVR|1|ECTSV IRESTaura syndrome virusHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIElectron microscopy2.871912023-09-06
68T3B|1|ECTSV IRESTaura syndrome virusHypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IElectron microscopy3.082002024-12-11
75JUP|1|ECIRESTaura syndrome virusSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)Electron microscopy3.51982016-10-05
88EWB|1|ECTaura syndrome virus (TSV) internal ribosome entry site (IRES) RNATaura syndrome virusHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIIElectron microscopy2.871532023-09-06
98T3C|1|ECTSV IRESTaura syndrome virusHypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIElectron microscopy3.862002024-12-11
105JUU|1|ECIRESTaura syndrome virusSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)Electron microscopy41982016-10-05
115JUO|1|ECIRESTaura syndrome virusSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)Electron microscopy41982016-10-05
125JUT|1|ECIRESTaura syndrome virusSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)Electron microscopy41982016-10-05
138T3D|1|ECTSV IRESTaura syndrome virusHypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIIElectron microscopy2.951362024-12-11
148T3E|1|ECTSV IRESTaura syndrome virusHypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IVElectron microscopy3.041312024-12-11
158T3F|1|ECTSV IRESTaura syndrome virusHypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure VElectron microscopy3.091332024-12-11

Release history

Release3.3653.3663.3673.3683.3693.3703.3713.3723.3733.3743.3753.3763.377
Date2024-12-112024-12-182024-12-252025-01-012025-01-082025-01-152025-01-222025-01-292025-02-052025-02-122025-02-192025-02-262025-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 15 of 15 entries
#SViewPDBTitleMethodResolution#NTs
18T3D|1|ECHypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIIELECTRON MICROSCOPY2.95136
28T3F|1|ECHypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure VELECTRON MICROSCOPY3.09133
38T3E|1|ECHypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IVELECTRON MICROSCOPY3.04131
48T3B|1|ECHypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IELECTRON MICROSCOPY3.08200
58T3C|1|ECHypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIELECTRON MICROSCOPY3.86200
65JUT|1|ECSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)ELECTRON MICROSCOPY4198
75JUO|1|ECSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)ELECTRON MICROSCOPY4198
85JUP|1|ECSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.5198
98EVR|1|ECHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIELECTRON MICROSCOPY2.87191
108EUB|1|ECHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IELECTRON MICROSCOPY2.52195
118EVQ|1|ECHypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure IELECTRON MICROSCOPY2.72200
128EWB|1|ECHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIIELECTRON MICROSCOPY2.87153
138EVP|1|ECHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IELECTRON MICROSCOPY2.38192
148EWC|1|ECHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIELECTRON MICROSCOPY2.45192
155JUU|1|ECSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)ELECTRON MICROSCOPY4198

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

8T3D|1|EC:8T3D|1|EC = 08T3D|1|EC:8T3F|1|EC = 0.45028T3D|1|EC:8T3E|1|EC = 0.48588T3D|1|EC:8T3B|1|EC = 0.50468T3D|1|EC:8T3C|1|EC = 0.49268T3D|1|EC:5JUT|1|EC = 0.64398T3D|1|EC:5JUO|1|EC = 0.63538T3D|1|EC:5JUP|1|EC = 0.66558T3D|1|EC:8EVR|1|EC = 0.50508T3D|1|EC:8EUB|1|EC = 0.50128T3D|1|EC:8EVQ|1|EC = 0.49918T3D|1|EC:8EWB|1|EC = 0.61088T3D|1|EC:8EVP|1|EC = 0.55218T3D|1|EC:8EWC|1|EC = 0.55378T3D|1|EC:5JUU|1|EC = 0.82128T3F|1|EC:8T3D|1|EC = 0.45028T3F|1|EC:8T3F|1|EC = 08T3F|1|EC:8T3E|1|EC = 0.20978T3F|1|EC:8T3B|1|EC = 0.19278T3F|1|EC:8T3C|1|EC = 0.21258T3F|1|EC:5JUT|1|EC = 0.51988T3F|1|EC:5JUO|1|EC = 0.50958T3F|1|EC:5JUP|1|EC = 0.47398T3F|1|EC:8EVR|1|EC = 0.19378T3F|1|EC:8EUB|1|EC = 0.19128T3F|1|EC:8EVQ|1|EC = 0.18438T3F|1|EC:8EWB|1|EC = 0.27168T3F|1|EC:8EVP|1|EC = 0.23718T3F|1|EC:8EWC|1|EC = 0.24238T3F|1|EC:5JUU|1|EC = 0.64728T3E|1|EC:8T3D|1|EC = 0.48588T3E|1|EC:8T3F|1|EC = 0.20978T3E|1|EC:8T3E|1|EC = 08T3E|1|EC:8T3B|1|EC = 0.20668T3E|1|EC:8T3C|1|EC = 0.22528T3E|1|EC:5JUT|1|EC = 0.52118T3E|1|EC:5JUO|1|EC = 0.54298T3E|1|EC:5JUP|1|EC = 0.47538T3E|1|EC:8EVR|1|EC = 0.21628T3E|1|EC:8EUB|1|EC = 0.19958T3E|1|EC:8EVQ|1|EC = 0.19308T3E|1|EC:8EWB|1|EC = 0.31088T3E|1|EC:8EVP|1|EC = 0.25728T3E|1|EC:8EWC|1|EC = 0.27048T3E|1|EC:5JUU|1|EC = 0.63408T3B|1|EC:8T3D|1|EC = 0.50468T3B|1|EC:8T3F|1|EC = 0.19278T3B|1|EC:8T3E|1|EC = 0.20668T3B|1|EC:8T3B|1|EC = 08T3B|1|EC:8T3C|1|EC = 0.11318T3B|1|EC:5JUT|1|EC = 0.44088T3B|1|EC:5JUO|1|EC = 0.45228T3B|1|EC:5JUP|1|EC = 0.39808T3B|1|EC:8EVR|1|EC = 0.25318T3B|1|EC:8EUB|1|EC = 0.13828T3B|1|EC:8EVQ|1|EC = 0.13428T3B|1|EC:8EWB|1|EC = 0.27318T3B|1|EC:8EVP|1|EC = 0.35328T3B|1|EC:8EWC|1|EC = 0.35378T3B|1|EC:5JUU|1|EC = 0.57298T3C|1|EC:8T3D|1|EC = 0.49268T3C|1|EC:8T3F|1|EC = 0.21258T3C|1|EC:8T3E|1|EC = 0.22528T3C|1|EC:8T3B|1|EC = 0.11318T3C|1|EC:8T3C|1|EC = 08T3C|1|EC:5JUT|1|EC = 0.43828T3C|1|EC:5JUO|1|EC = 0.47028T3C|1|EC:5JUP|1|EC = 0.41848T3C|1|EC:8EVR|1|EC = 0.28018T3C|1|EC:8EUB|1|EC = 0.17378T3C|1|EC:8EVQ|1|EC = 0.16878T3C|1|EC:8EWB|1|EC = 0.28198T3C|1|EC:8EVP|1|EC = 0.38028T3C|1|EC:8EWC|1|EC = 0.38448T3C|1|EC:5JUU|1|EC = 0.59335JUT|1|EC:8T3D|1|EC = 0.64395JUT|1|EC:8T3F|1|EC = 0.51985JUT|1|EC:8T3E|1|EC = 0.52115JUT|1|EC:8T3B|1|EC = 0.44085JUT|1|EC:8T3C|1|EC = 0.43825JUT|1|EC:5JUT|1|EC = 05JUT|1|EC:5JUO|1|EC = 0.42035JUT|1|EC:5JUP|1|EC = 0.41825JUT|1|EC:8EVR|1|EC = 0.56835JUT|1|EC:8EUB|1|EC = 0.49045JUT|1|EC:8EVQ|1|EC = 0.48345JUT|1|EC:8EWB|1|EC = 0.58005JUT|1|EC:8EVP|1|EC = 0.63485JUT|1|EC:8EWC|1|EC = 0.63755JUT|1|EC:5JUU|1|EC = 0.61785JUO|1|EC:8T3D|1|EC = 0.63535JUO|1|EC:8T3F|1|EC = 0.50955JUO|1|EC:8T3E|1|EC = 0.54295JUO|1|EC:8T3B|1|EC = 0.45225JUO|1|EC:8T3C|1|EC = 0.47025JUO|1|EC:5JUT|1|EC = 0.42035JUO|1|EC:5JUO|1|EC = 05JUO|1|EC:5JUP|1|EC = 0.31555JUO|1|EC:8EVR|1|EC = 0.51085JUO|1|EC:8EUB|1|EC = 0.47925JUO|1|EC:8EVQ|1|EC = 0.48965JUO|1|EC:8EWB|1|EC = 0.53155JUO|1|EC:8EVP|1|EC = 0.56355JUO|1|EC:8EWC|1|EC = 0.56765JUO|1|EC:5JUU|1|EC = 0.61775JUP|1|EC:8T3D|1|EC = 0.66555JUP|1|EC:8T3F|1|EC = 0.47395JUP|1|EC:8T3E|1|EC = 0.47535JUP|1|EC:8T3B|1|EC = 0.39805JUP|1|EC:8T3C|1|EC = 0.41845JUP|1|EC:5JUT|1|EC = 0.41825JUP|1|EC:5JUO|1|EC = 0.31555JUP|1|EC:5JUP|1|EC = 05JUP|1|EC:8EVR|1|EC = 0.45745JUP|1|EC:8EUB|1|EC = 0.41865JUP|1|EC:8EVQ|1|EC = 0.42965JUP|1|EC:8EWB|1|EC = 0.49505JUP|1|EC:8EVP|1|EC = 0.50435JUP|1|EC:8EWC|1|EC = 0.50325JUP|1|EC:5JUU|1|EC = 0.51848EVR|1|EC:8T3D|1|EC = 0.50508EVR|1|EC:8T3F|1|EC = 0.19378EVR|1|EC:8T3E|1|EC = 0.21628EVR|1|EC:8T3B|1|EC = 0.25318EVR|1|EC:8T3C|1|EC = 0.28018EVR|1|EC:5JUT|1|EC = 0.56838EVR|1|EC:5JUO|1|EC = 0.51088EVR|1|EC:5JUP|1|EC = 0.45748EVR|1|EC:8EVR|1|EC = 08EVR|1|EC:8EUB|1|EC = 0.20828EVR|1|EC:8EVQ|1|EC = 0.21778EVR|1|EC:8EWB|1|EC = 0.42508EVR|1|EC:8EVP|1|EC = 0.44108EVR|1|EC:8EWC|1|EC = 0.43738EVR|1|EC:5JUU|1|EC = 0.66068EUB|1|EC:8T3D|1|EC = 0.50128EUB|1|EC:8T3F|1|EC = 0.19128EUB|1|EC:8T3E|1|EC = 0.19958EUB|1|EC:8T3B|1|EC = 0.13828EUB|1|EC:8T3C|1|EC = 0.17378EUB|1|EC:5JUT|1|EC = 0.49048EUB|1|EC:5JUO|1|EC = 0.47928EUB|1|EC:5JUP|1|EC = 0.41868EUB|1|EC:8EVR|1|EC = 0.20828EUB|1|EC:8EUB|1|EC = 08EUB|1|EC:8EVQ|1|EC = 0.05538EUB|1|EC:8EWB|1|EC = 0.26988EUB|1|EC:8EVP|1|EC = 0.35148EUB|1|EC:8EWC|1|EC = 0.35268EUB|1|EC:5JUU|1|EC = 0.59238EVQ|1|EC:8T3D|1|EC = 0.49918EVQ|1|EC:8T3F|1|EC = 0.18438EVQ|1|EC:8T3E|1|EC = 0.19308EVQ|1|EC:8T3B|1|EC = 0.13428EVQ|1|EC:8T3C|1|EC = 0.16878EVQ|1|EC:5JUT|1|EC = 0.48348EVQ|1|EC:5JUO|1|EC = 0.48968EVQ|1|EC:5JUP|1|EC = 0.42968EVQ|1|EC:8EVR|1|EC = 0.21778EVQ|1|EC:8EUB|1|EC = 0.05538EVQ|1|EC:8EVQ|1|EC = 08EVQ|1|EC:8EWB|1|EC = 0.26508EVQ|1|EC:8EVP|1|EC = 0.35248EVQ|1|EC:8EWC|1|EC = 0.35468EVQ|1|EC:5JUU|1|EC = 0.59008EWB|1|EC:8T3D|1|EC = 0.61088EWB|1|EC:8T3F|1|EC = 0.27168EWB|1|EC:8T3E|1|EC = 0.31088EWB|1|EC:8T3B|1|EC = 0.27318EWB|1|EC:8T3C|1|EC = 0.28198EWB|1|EC:5JUT|1|EC = 0.58008EWB|1|EC:5JUO|1|EC = 0.53158EWB|1|EC:5JUP|1|EC = 0.49508EWB|1|EC:8EVR|1|EC = 0.42508EWB|1|EC:8EUB|1|EC = 0.26988EWB|1|EC:8EVQ|1|EC = 0.26508EWB|1|EC:8EWB|1|EC = 08EWB|1|EC:8EVP|1|EC = 0.38408EWB|1|EC:8EWC|1|EC = 0.38728EWB|1|EC:5JUU|1|EC = 0.55668EVP|1|EC:8T3D|1|EC = 0.55218EVP|1|EC:8T3F|1|EC = 0.23718EVP|1|EC:8T3E|1|EC = 0.25728EVP|1|EC:8T3B|1|EC = 0.35328EVP|1|EC:8T3C|1|EC = 0.38028EVP|1|EC:5JUT|1|EC = 0.63488EVP|1|EC:5JUO|1|EC = 0.56358EVP|1|EC:5JUP|1|EC = 0.50438EVP|1|EC:8EVR|1|EC = 0.44108EVP|1|EC:8EUB|1|EC = 0.35148EVP|1|EC:8EVQ|1|EC = 0.35248EVP|1|EC:8EWB|1|EC = 0.38408EVP|1|EC:8EVP|1|EC = 08EVP|1|EC:8EWC|1|EC = 0.08818EVP|1|EC:5JUU|1|EC = 0.61288EWC|1|EC:8T3D|1|EC = 0.55378EWC|1|EC:8T3F|1|EC = 0.24238EWC|1|EC:8T3E|1|EC = 0.27048EWC|1|EC:8T3B|1|EC = 0.35378EWC|1|EC:8T3C|1|EC = 0.38448EWC|1|EC:5JUT|1|EC = 0.63758EWC|1|EC:5JUO|1|EC = 0.56768EWC|1|EC:5JUP|1|EC = 0.50328EWC|1|EC:8EVR|1|EC = 0.43738EWC|1|EC:8EUB|1|EC = 0.35268EWC|1|EC:8EVQ|1|EC = 0.35468EWC|1|EC:8EWB|1|EC = 0.38728EWC|1|EC:8EVP|1|EC = 0.08818EWC|1|EC:8EWC|1|EC = 08EWC|1|EC:5JUU|1|EC = 0.60185JUU|1|EC:8T3D|1|EC = 0.82125JUU|1|EC:8T3F|1|EC = 0.64725JUU|1|EC:8T3E|1|EC = 0.63405JUU|1|EC:8T3B|1|EC = 0.57295JUU|1|EC:8T3C|1|EC = 0.59335JUU|1|EC:5JUT|1|EC = 0.61785JUU|1|EC:5JUO|1|EC = 0.61775JUU|1|EC:5JUP|1|EC = 0.51845JUU|1|EC:8EVR|1|EC = 0.66065JUU|1|EC:8EUB|1|EC = 0.59235JUU|1|EC:8EVQ|1|EC = 0.59005JUU|1|EC:8EWB|1|EC = 0.55665JUU|1|EC:8EVP|1|EC = 0.61285JUU|1|EC:8EWC|1|EC = 0.60185JUU|1|EC:5JUU|1|EC = 08T3D|1|EC8T3F|1|EC8T3E|1|EC8T3B|1|EC8T3C|1|EC5JUT|1|EC5JUO|1|EC5JUP|1|EC8EVR|1|EC8EUB|1|EC8EVQ|1|EC8EWB|1|EC8EVP|1|EC8EWC|1|EC5JUU|1|ECDiscrepancy0.000.200.400.600.80

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