RNA 3D Hub //

Equivalence class NR_4.0_05364.4 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19B0G|1|Et (rep)Transfer RNAE site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ human Hibernating class4 80S ribosomeElectron microscopy2.57752025-03-19
29B0H|1|EtTransfer RNAE site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ human Hibernating class5 80S ribosomeElectron microscopy2.59752025-03-19
39B0W|1|PETransfer RNAP/E site tRNAHomo sapiensEukaryaRF00005In situ human eEF2-A/P-P/E state 80S ribosomeElectron microscopy2.66752025-04-30
49B11|1|EtTransfer RNAE site tRNAHomo sapiensEukaryaRF00005In situ human unrotated hibernating without CCDC124 state 80S ribosomeElectron microscopy2.77752025-04-30
59B0F|1|EtTransfer RNAE site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ human Hibernating class3 80S ribosomeElectron microscopy2.78752025-03-19
69DPL|1|CTransfer RNAtRNA-Lys3 (Cellular modified)Homo sapiensEukaryaRF00005Human LysRS bound to cellular modified tRNA-Lys3 and AIMP2Electron microscopy2.8762025-03-12
79AZS|1|EtTransfer RNAE site tRNAHomo sapiensEukaryaRF00005In situ human Post-eEF1A-AT-P-E state 80S ribosomeElectron microscopy2.8752025-04-30
89B0R|1|EtTransfer RNAE site tRNAHomo sapiensEukaryaRF00005In situ human hibernating class2 80S ribosomeElectron microscopy2.81752025-03-19
99B0P|1|EtTransfer RNAE site tRNAHomo sapiensEukaryaRF00005In situ human Hibernating class1 80S ribosomeElectron microscopy2.82752025-03-19
109B0J|1|EtTransfer RNAE site tRNAHomo sapiensEukaryaRF00005In situ human unrotated hibernating with CCDC124 state 80S ribosomeElectron microscopy2.84752025-04-30
119AZN|1|PETransfer RNAP/E site tRNAHomo sapiensEukaryaRF00005In situ human A/P-P/E state 80S ribosomeElectron microscopy2.98752025-04-30
129DPA|1|CTransfer RNAtRNA-Lys3Homo sapiensEukaryaRF00005Human LysRS bound to unmodified tRNA-Lys3 (3'-CCA Docked State, AMP bound)Electron microscopy3762025-03-12
139DPB|1|CTransfer RNAtRNA-Lys3 (unmodified)Homo sapiensEukaryaRF00005Human LysRS bound to unmodified tRNA-Lys3 (Undocked State, AMPCPP bound)Electron microscopy2.9732025-03-12
149B0Q|1|PETransfer RNAP/E site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ human top-back di-ribosome structure (Composite map)Electron microscopy3.2752025-03-19
159B0Q|1|pETransfer RNAP/E site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ human top-back di-ribosome structure (Composite map)Electron microscopy3.2752025-03-19
169DOW|1|CTransfer RNAtRNA-Lys3 (Unmodified)Homo sapiensEukaryaRF00005h-LysRS bound to unmodified tRNA-Lys3 (Undocked State, AMP bound)Electron microscopy3.1732025-03-12
178UIZ|1|EtTransfer RNAE site tRNAHomo sapiensEukaryaRF00005In situ human P-E state 80S ribosomeElectron microscopy3.43752025-04-09
189B0S|1|pETransfer RNAP/E site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ human top-top di-ribosome structure (Composite map)Electron microscopy3.8752025-03-19
199B0S|1|EtTransfer RNAP/E site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ human top-top di-ribosome structure (Composite map)Electron microscopy3.8752025-03-19
208D9K|1|CTransfer RNARNA (65-MER)Homo sapiensEukaryaRF00005CryoEM structure of human METTL1-WDR4 in complex with Lys-tRNAElectron microscopy3.72652023-01-11

Release history

Release3.3853.3863.3873.3883.3893.390
Date2025-04-302025-05-072025-05-142025-05-212025-05-282025-06-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
19B0Q|1|PEIn situ human top-back di-ribosome structure (Composite map)ELECTRON MICROSCOPY3.275
29AZN|1|PEIn situ human A/P-P/E state 80S ribosomeELECTRON MICROSCOPY2.9875
39B0W|1|PEIn situ human eEF2-A/P-P/E state 80S ribosomeELECTRON MICROSCOPY2.6675
49B0S|1|pEIn situ human top-top di-ribosome structure (Composite map)ELECTRON MICROSCOPY3.875
59B0Q|1|pEIn situ human top-back di-ribosome structure (Composite map)ELECTRON MICROSCOPY3.275
69B0F|1|EtIn situ human Hibernating class3 80S ribosomeELECTRON MICROSCOPY2.7875
79B0R|1|EtIn situ human hibernating class2 80S ribosomeELECTRON MICROSCOPY2.8175
89B0P|1|EtIn situ human Hibernating class1 80S ribosomeELECTRON MICROSCOPY2.8275
99B0H|1|EtIn situ human Hibernating class5 80S ribosomeELECTRON MICROSCOPY2.5975
109B0G|1|EtIn situ human Hibernating class4 80S ribosomeELECTRON MICROSCOPY2.5775
119B0S|1|EtIn situ human top-top di-ribosome structure (Composite map)ELECTRON MICROSCOPY3.875
129AZS|1|EtIn situ human Post-eEF1A-AT-P-E state 80S ribosomeELECTRON MICROSCOPY2.875
139B11|1|EtIn situ human unrotated hibernating without CCDC124 state 80S ribosomeELECTRON MICROSCOPY2.7775
149B0J|1|EtIn situ human unrotated hibernating with CCDC124 state 80S ribosomeELECTRON MICROSCOPY2.8475
158UIZ|1|EtIn situ human P-E state 80S ribosomeELECTRON MICROSCOPY3.4375
169DOW|1|Ch-LysRS bound to unmodified tRNA-Lys3 (Undocked State, AMP bound)ELECTRON MICROSCOPY3.173
179DPB|1|CHuman LysRS bound to unmodified tRNA-Lys3 (Undocked State, AMPCPP bound)ELECTRON MICROSCOPY2.973
188D9K|1|CCryoEM structure of human METTL1-WDR4 in complex with Lys-tRNAELECTRON MICROSCOPY3.7265
199DPL|1|CHuman LysRS bound to cellular modified tRNA-Lys3 and AIMP2ELECTRON MICROSCOPY2.876
209DPA|1|CHuman LysRS bound to unmodified tRNA-Lys3 (3'-CCA Docked State, AMP bound)ELECTRON MICROSCOPY376

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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