RNA 3D Hub //

Equivalence class NR_4.0_06650.51 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18SCB|1|5+ 8SCB|1|8 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA28S_rRNA, 5.8S_rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Terminating ribosome with SRI-41315Electron microscopy2.536862023-12-27
27O7Z|1|B5+ 7O7Z|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)Electron microscopy2.439202021-06-02
38RJB|1|K+ 8RJB|1|vLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4Electron microscopy2.6924336992024-01-24
411IQ|1|28+ 11IQ|1|58Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S with eEF2,eIF5A and SERBP1Electron microscopy2.436492026-09-02
58RJD|1|K+ 8RJD|1|vLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2Electron microscopy2.7857436992024-01-24
68RJC|1|K+ 8RJC|1|vLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1Electron microscopy2.9006136992024-01-24
79RHU|1|A3+ 9RHU|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequenceElectron microscopy2.6539202026-01-21
88B6C|1|5+ 8B6C|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147Electron microscopy2.7937702023-02-22
98B5L|1|5+ 8B5L|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complexElectron microscopy2.8637702023-03-01
109YQ0|1|5+ 9YQ0|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Vacant ribosome with P-site tRNA, substate 2, Structure IbElectron microscopy2.937522025-12-17
119YQ1|1|5+ 9YQ1|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Vacant ribosome with P-site tRNA, substate 3, Structure IcElectron microscopy2.937522025-12-17
129YPZ|1|5+ 9YPZ|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Vacant ribosome with P-site tRNA, substate 1, Structure IaElectron microscopy2.937522025-12-24
138VVQ|1|WA+ 8VVQ|1|YALarge subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasetsElectron microscopy2.737342025-07-30
149BDL|1|A28S+ 9BDL|1|A58SLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF0000280S ribosome with angiogeninElectron microscopy2.837082024-07-24
159YPW|1|5+ 9YPW|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IVElectron microscopy2.937522025-12-31
169YPY|1|5+ 9YPY|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Ribosome with accommodated A-site tRNA, Structure VElectron microscopy337522025-12-24
179YPG|1|5+ 9YPG|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure IIIElectron microscopy337522025-12-31
188BPO|1|A1+ 8BPO|1|C1Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)Electron microscopy2.836942023-07-05
199YPO|1|5+ 9YPO|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIaElectron microscopy337522025-12-17
209YPS|1|5+ 9YPS|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIbElectron microscopy337522025-12-17
219QQA|1|B5+ 9QQA|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Ternary complex of translating ribosome, NAC and NMT1Electron microscopy2.838622025-07-16
229YPV|1|5+ 9YPV|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIdElectron microscopy337522025-12-17
238P2K|1|B5+ 8P2K|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Ternary complex of translating ribosome, NAC and METAP1Electron microscopy2.939202023-07-19
247UCK|1|5+ 7UCK|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28s rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF0000280S translation initiation complex with ac4c(-1) mRNA and HarringtonineElectron microscopy2.836972022-06-01
259YPT|1|5+ 9YPT|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIcElectron microscopy3.137522025-12-17
2611HV|1|28+ 11HV|1|58Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 60S ribosomal subunit with eEF2 domain IV openElectron microscopy2.936372026-09-02
277NWI|1|5+ 7NWI|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA+BlaS, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin SElectron microscopy3.1338182021-07-07
287TOR|1|A28S+ 7TOR|1|A58SLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20Electron microscopy2.937032022-05-25
298VVP|1|WA+ 8VVP|1|YALarge subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Codon sampling state obtained from Anisomycin-treated mammalian ribosomesElectron microscopy2.937342025-07-30
3011HE|1|28+ 11HE|1|58Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 60S ribosomal subunit with eEF2 domain IV closedElectron microscopy2.8636372026-09-02
319BDN|1|A28S+ 9BDN|1|A58SLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF0000280S ribosome with angiogenin and tRNAAlaElectron microscopy3.137082024-07-24
327ZJX|1|L5+ 7ZJX|1|L8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome programmed with SECIS and SBP2Electron microscopy3.138882022-09-07
339F1B|1|B5+ 9F1B|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/EElectron microscopy3.0138622024-08-21
349MR4|1|5+ 9MR4|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002NAC: Ribosome nascent chain complex(Oxa1L)Electron microscopy2.6536202025-08-20
357TM3|1|K+ 7TM3|1|vLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass transloconElectron microscopy3.2536992022-10-19
3611HG|1|28+ 11HG|1|58Large subunit ribosomal RNA + 5.8S ribosomal RNA28s rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveledElectron microscopy2.936532026-09-02
376P5I|1|5+ 6P5I|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)Electron microscopy3.137452019-09-18
389NDP|1|5+ 9NDP|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of stalled ribosome and nascent chain in complex with NMT2 and NACElectron microscopy2.8236852025-09-10
398BHF|1|A2+ 8BHF|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4Electron microscopy3.137542023-09-06
407OBR|1|5+ 7OBR|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002RNC-SRP early complexElectron microscopy2.836492021-07-21
417O81|1|B5+ 7O81|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknotElectron microscopy3.139202021-06-02
4211JJ|1|28+ 11JJ|1|58Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveledElectron microscopy2.936532026-09-02
436P5K|1|5+ 6P5K|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)Electron microscopy3.137452019-09-18
447UCJ|1|5+ 7UCJ|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28s rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian 80S translation initiation complex with mRNA and HarringtonineElectron microscopy3.136492022-06-01
456MTD|1|5+ 6MTD|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)Electron microscopy3.337482018-11-21
467TOQ|1|A25S+ 7TOQ|1|A58SLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PRElectron microscopy3.138052022-05-25
476MTE|1|5+ 6MTE|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)Electron microscopy3.437482018-11-21
489Q7Q|1|5+ 9Q7Q|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002ABCE1-eRF1-RNC-AMD1CElectron microscopy2.8635952026-03-04
496P5N|1|5+ 6P5N|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1Electron microscopy3.237452019-09-25
506MTC|1|5+ 6MTC|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)Electron microscopy3.437482018-11-21
516R5Q|1|5+ 6R5Q|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of XBP1u-paused ribosome nascent chain complex (post-state)Electron microscopy336942019-07-10
529F1D|1|B5+ 9F1D|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPKElectron microscopy3.2638622024-08-21
537MDZ|1|5+ 7MDZ|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF0000280S rabbit ribosome stalled with benzamide-CHXElectron microscopy3.236922021-09-01
548VVT|1|WA+ 8VVT|1|YALarge subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian ribosomes bound to Anisomycin in the rotated conformationElectron microscopy2.936922025-07-30
555LZV|1|5+ 5LZV|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.Electron microscopy3.3536942016-11-30
5611KH|1|28+ 11KH|1|58Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S with IFRD2 and LARP1, 40S head-swiveledElectron microscopy3.136932026-09-02
575LZS|1|5+ 5LZS|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BElectron microscopy3.3136942016-11-30
586MTB|1|5+ 6MTB|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)Electron microscopy3.637482018-11-21
599QQB|1|B5+ 9QQB|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Quaternary complex of a translating ribosome, NAC, NMT1, and NatAElectron microscopy3.4339202025-07-16
605LZZ|1|5+ 5LZZ|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)Electron microscopy3.4736942016-11-30
616P5J|1|5+ 6P5J|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)Electron microscopy3.137452019-09-18
627A01|1|e2+ 7A01|1|h2Large subunit ribosomal RNA + 5.8S ribosomal RNA28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNAOryctolagus cuniculusEukaryaRF02543 + RF00002The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanismElectron microscopy3.639812020-12-30
636R6P|1|5+ 6R6P|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of XBP1u-paused ribosome nascent chain complex (rotated state)Electron microscopy3.138182019-07-10
648VVR|1|WA+ 8VVR|1|YALarge subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomesElectron microscopy3.137342025-07-30
658VVS|1|WA+ 8VVS|1|YALarge subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomesElectron microscopy3.137342025-07-30
667NWG|1|51+ 7NWG|1|81Large subunit ribosomal RNA + 5.8S ribosomal RNA28S Ribosomal RNA, 5.8S Ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.Electron microscopy3.837772021-07-07
677QWQ|1|5+ 7QWQ|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Ternary complex of ribosome nascent chain with SRP and NACElectron microscopy2.8336492022-03-16
688VFT|1|5+ 8VFT|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Translating 80S rabbit ribosome stalled by emetine with eEF2Electron microscopy3.336852024-12-25
696ZVK|1|e2+ 6ZVK|1|h2Large subunit ribosomal RNA + 5.8S ribosomal RNA28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNAOryctolagus cuniculusEukaryaRF02543 + RF00002The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanismElectron microscopy3.4940762020-12-23
706D90|1|5+ 6D90|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.Electron microscopy3.237452018-06-06
717NFX|1|5+ 7NFX|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state AElectron microscopy3.236492021-06-02
727QWR|1|5+ 7QWR|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NACElectron microscopy2.936492022-03-09
735LZW|1|5+ 5LZW|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.Electron microscopy3.5336942016-11-30
747TUT|1|K+ 7TUT|1|vLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass transloconElectron microscopy3.8836992022-10-19
755LZT|1|5+ 5LZT|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.Electron microscopy3.6536942016-11-30
766HCF|1|52+ 6HCF|1|82Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonElectron microscopy3.937852018-10-17
779F1C|1|B5+ 9F1C|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/EElectron microscopy3.7838622024-08-21
789BDP|1|A28S+ 9BDP|1|A58SLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF0000280S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAlaElectron microscopy3.737082024-07-24
798VVV|1|5+ 8VVV|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian ribosomes bound to Anisomycin in the nonrotated conformationElectron microscopy3.136802025-07-30
806D9J|1|5+ 6D9J|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.Electron microscopy3.237452018-06-06
816GZ5|1|A2+ 6GZ5|1|A3Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)Electron microscopy3.537692018-12-05
826GZ4|1|A2+ 6GZ4|1|A3Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)Electron microscopy3.637692018-12-05
835LZU|1|5+ 5LZU|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian ribosomal termination complex with accommodated eRF1Electron microscopy3.7536942016-11-30
846GZ3|1|A2+ 6GZ3|1|A3Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)Electron microscopy3.637692018-12-05
856FRK|1|5+ 6FRK|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexElectron microscopy3.738142018-03-28
863JAH|1|5+ 3JAH|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonElectron microscopy3.4538182015-08-12
876R6G|1|5+ 6R6G|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of XBP1u-paused ribosome nascent chain complex with SRP.Electron microscopy3.736942019-07-10
885LZY|1|5+ 5LZY|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.Electron microscopy3.9936942016-11-30
893JAG|1|5+ 3JAG|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonElectron microscopy3.6538182015-08-12
906HCJ|1|51+ 6HCJ|1|81Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsElectron microscopy3.837862018-10-17
916R7Q|1|5+ 6R7Q|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of XBP1u-paused ribosome nascent chain complex with Sec61.Electron microscopy3.936942019-07-10
923JAI|1|5+ 3JAI|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonElectron microscopy3.6538182015-08-12
938VVU|1|WA+ 8VVU|1|YALarge subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNAElectron microscopy3.837342025-07-30
945LZX|1|5+ 5LZX|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.Electron microscopy3.6736942016-11-30
953J92|1|5+ 3J92|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure and assembly pathway of the ribosome quality control complexElectron microscopy3.638182015-01-21
967QWS|1|5+ 7QWS|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of ribosome translating beta-tubulin in complex with TTC5 and NACElectron microscopy3.436492022-03-09
976T59|1|54+ 6T59|1|84Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexElectron microscopy3.1136942019-11-27
983JAJ|1|5+ 3JAJ|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the engaged state of the mammalian SRP-ribosome complexElectron microscopy3.7538142015-08-05
993JAN|1|5+ 3JAN|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the scanning state of the mammalian SRP-ribosome complexElectron microscopy3.7538142015-08-05
1007O7Y|1|B5+ 7O7Y|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)Electron microscopy2.239202021-06-02
1017ZJW|1|L5+ 7ZJW|1|L8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome as it decodes the Sec-UGA codonElectron microscopy2.839202022-10-19
1027O80|1|B5+ 7O80|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteElectron microscopy2.939202021-06-02
1036SGC|1|54+ 6SGC|1|84Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit 80S ribosome stalled on a poly(A) tailElectron microscopy2.837542019-12-04
1048BTK|1|B5+ 8BTK|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the TRAP complex with the Sec translocon and a translating ribosomeElectron microscopy3.539202023-05-24
1057OYD|1|5+ 7OYD|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1bElectron microscopy2.335022022-07-20
1069Q1S|1|5+ 9Q1S|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002NediV IRES (P site) in complex with Rabbit 80S ribosomeElectron microscopy336942026-06-17
1079Q2P|1|5+ 9Q2P|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORFElectron microscopy336942026-06-17
1089Q2M|1|5+ 9Q2M|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORFElectron microscopy3.336632026-06-17
1099Q1Q|1|5+ 9Q1Q|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002NediV IRES (A site) in complex with Rabbit 80S ribosomeElectron microscopy3.537542026-06-17

Release history

Release4.55
Date2026-09-02

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17O80|1|B5+ 7O80|1|B8Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteELECTRON MICROSCOPY2.93920
29RHU|1|A3+ 9RHU|1|C3Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequenceELECTRON MICROSCOPY2.653920
39Q7Q|1|5+ 9Q7Q|1|8ABCE1-eRF1-RNC-AMD1CELECTRON MICROSCOPY2.863595
46HCJ|1|51+ 6HCJ|1|81Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsELECTRON MICROSCOPY3.83786
57NWG|1|51+ 7NWG|1|81Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.ELECTRON MICROSCOPY3.83777
67TOQ|1|A25S+ 7TOQ|1|A58SMammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PRELECTRON MICROSCOPY3.13805
77O81|1|B5+ 7O81|1|B8Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknotELECTRON MICROSCOPY3.13920
88VFT|1|5+ 8VFT|1|8Translating 80S rabbit ribosome stalled by emetine with eEF2ELECTRON MICROSCOPY3.33685
97ZJX|1|L5+ 7ZJX|1|L8Rabbit 80S ribosome programmed with SECIS and SBP2ELECTRON MICROSCOPY3.13888
105LZT|1|5+ 5LZT|1|8Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.653694
115LZW|1|5+ 5LZW|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.533694
125LZX|1|5+ 5LZX|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.673694
135LZZ|1|5+ 5LZZ|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.473694
145LZY|1|5+ 5LZY|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.993694
159YPG|1|5+ 9YPG|1|8GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure IIIELECTRON MICROSCOPY33752
169YPT|1|5+ 9YPT|1|8GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIcELECTRON MICROSCOPY3.13752
179YPO|1|5+ 9YPO|1|8GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIaELECTRON MICROSCOPY33752
189YPV|1|5+ 9YPV|1|8GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIdELECTRON MICROSCOPY33752
199YPS|1|5+ 9YPS|1|8GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIbELECTRON MICROSCOPY33752
209YPW|1|5+ 9YPW|1|8GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IVELECTRON MICROSCOPY2.93752
219Q2M|1|5+ 9Q2M|1|8Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORFELECTRON MICROSCOPY3.33663
229Q2P|1|5+ 9Q2P|1|8Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORFELECTRON MICROSCOPY33694
235LZS|1|5+ 5LZS|1|8Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.313694
245LZU|1|5+ 5LZU|1|8Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.753694
255LZV|1|5+ 5LZV|1|8Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.353694
266R7Q|1|5+ 6R7Q|1|8Structure of XBP1u-paused ribosome nascent chain complex with Sec61.ELECTRON MICROSCOPY3.93694
276R5Q|1|5+ 6R5Q|1|8Structure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY33694
286R6G|1|5+ 6R6G|1|8Structure of XBP1u-paused ribosome nascent chain complex with SRP.ELECTRON MICROSCOPY3.73694
298BPO|1|A1+ 8BPO|1|C1Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)ELECTRON MICROSCOPY2.83694
307TUT|1|K+ 7TUT|1|vStructure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass transloconELECTRON MICROSCOPY3.883699
317TM3|1|K+ 7TM3|1|vStructure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass transloconELECTRON MICROSCOPY3.253699
326T59|1|54+ 6T59|1|84Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexELECTRON MICROSCOPY3.113694
338SCB|1|5+ 8SCB|1|8Terminating ribosome with SRI-41315ELECTRON MICROSCOPY2.53686
348VVQ|1|WA+ 8VVQ|1|YACodon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasetsELECTRON MICROSCOPY2.73734
358VVP|1|WA+ 8VVP|1|YACodon sampling state obtained from Anisomycin-treated mammalian ribosomesELECTRON MICROSCOPY2.93734
368VVU|1|WA+ 8VVU|1|YAAnisomycin-bound mammalian ribosome with partially accommodated A-site tRNAELECTRON MICROSCOPY3.83734
376P5J|1|5+ 6P5J|1|8Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.13745
386P5I|1|5+ 6P5I|1|8Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.13745
396P5K|1|5+ 6P5K|1|8Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)ELECTRON MICROSCOPY3.13745
4011HV|1|28+ 11HV|1|58Rabbit 60S ribosomal subunit with eEF2 domain IV openELECTRON MICROSCOPY2.93637
4111HE|1|28+ 11HE|1|58Rabbit 60S ribosomal subunit with eEF2 domain IV closedELECTRON MICROSCOPY2.863637
4211IQ|1|28+ 11IQ|1|58Rabbit 80S with eEF2,eIF5A and SERBP1ELECTRON MICROSCOPY2.43649
4311HG|1|28+ 11HG|1|58Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveledELECTRON MICROSCOPY2.93653
4411JJ|1|28+ 11JJ|1|58Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveledELECTRON MICROSCOPY2.93653
456MTE|1|5+ 6MTE|1|8Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.43748
466MTD|1|5+ 6MTD|1|8Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.33748
476MTC|1|5+ 6MTC|1|8Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.43748
486MTB|1|5+ 6MTB|1|8Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)ELECTRON MICROSCOPY3.63748
498VVV|1|5+ 8VVV|1|8Mammalian ribosomes bound to Anisomycin in the nonrotated conformationELECTRON MICROSCOPY3.13680
5011KH|1|28+ 11KH|1|58Rabbit 80S with IFRD2 and LARP1, 40S head-swiveledELECTRON MICROSCOPY3.13693
518RJB|1|K+ 8RJB|1|vStructure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4ELECTRON MICROSCOPY2.692433699
528RJC|1|K+ 8RJC|1|vStructure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1ELECTRON MICROSCOPY2.900613699
538RJD|1|K+ 8RJD|1|vStructure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2ELECTRON MICROSCOPY2.785743699
548VVT|1|WA+ 8VVT|1|YAMammalian ribosomes bound to Anisomycin in the rotated conformationELECTRON MICROSCOPY2.93692
557OYD|1|5+ 7OYD|1|8Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1bELECTRON MICROSCOPY2.33502
568B5L|1|5+ 8B5L|1|8Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complexELECTRON MICROSCOPY2.863770
578B6C|1|5+ 8B6C|1|8Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147ELECTRON MICROSCOPY2.793770
587UCK|1|5+ 7UCK|1|880S translation initiation complex with ac4c(-1) mRNA and HarringtonineELECTRON MICROSCOPY2.83697
597UCJ|1|5+ 7UCJ|1|8Mammalian 80S translation initiation complex with mRNA and HarringtonineELECTRON MICROSCOPY3.13649
609Q1Q|1|5+ 9Q1Q|1|8NediV IRES (A site) in complex with Rabbit 80S ribosomeELECTRON MICROSCOPY3.53754
619Q1S|1|5+ 9Q1S|1|8NediV IRES (P site) in complex with Rabbit 80S ribosomeELECTRON MICROSCOPY33694
626SGC|1|54+ 6SGC|1|84Rabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.83754
637MDZ|1|5+ 7MDZ|1|880S rabbit ribosome stalled with benzamide-CHXELECTRON MICROSCOPY3.23692
648BHF|1|A2+ 8BHF|1|C2Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4ELECTRON MICROSCOPY3.13754
658VVS|1|WA+ 8VVS|1|YAPost-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomesELECTRON MICROSCOPY3.13734
668VVR|1|WA+ 8VVR|1|YAPost-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomesELECTRON MICROSCOPY3.13734
679BDP|1|A28S+ 9BDP|1|A58S80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAlaELECTRON MICROSCOPY3.73708
689BDN|1|A28S+ 9BDN|1|A58S80S ribosome with angiogenin and tRNAAlaELECTRON MICROSCOPY3.13708
699YPY|1|5+ 9YPY|1|8Ribosome with accommodated A-site tRNA, Structure VELECTRON MICROSCOPY33752
709YPZ|1|5+ 9YPZ|1|8Vacant ribosome with P-site tRNA, substate 1, Structure IaELECTRON MICROSCOPY2.93752
719YQ1|1|5+ 9YQ1|1|8Vacant ribosome with P-site tRNA, substate 3, Structure IcELECTRON MICROSCOPY2.93752
729YQ0|1|5+ 9YQ0|1|8Vacant ribosome with P-site tRNA, substate 2, Structure IbELECTRON MICROSCOPY2.93752
739NDP|1|5+ 9NDP|1|8Structure of stalled ribosome and nascent chain in complex with NMT2 and NACELECTRON MICROSCOPY2.823685
749MR4|1|5+ 9MR4|1|8NAC: Ribosome nascent chain complex(Oxa1L)ELECTRON MICROSCOPY2.653620
757TOR|1|A28S+ 7TOR|1|A58SMammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20ELECTRON MICROSCOPY2.93703
769BDL|1|A28S+ 9BDL|1|A58S80S ribosome with angiogeninELECTRON MICROSCOPY2.83708
779QQA|1|B5+ 9QQA|1|B8Ternary complex of translating ribosome, NAC and NMT1ELECTRON MICROSCOPY2.83862
789QQB|1|B5+ 9QQB|1|B8Quaternary complex of a translating ribosome, NAC, NMT1, and NatAELECTRON MICROSCOPY3.433920
799F1C|1|B5+ 9F1C|1|B8Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/EELECTRON MICROSCOPY3.783862
809F1D|1|B5+ 9F1D|1|B8Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPKELECTRON MICROSCOPY3.263862
817O7Z|1|B5+ 7O7Z|1|B8Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)ELECTRON MICROSCOPY2.43920
827O7Y|1|B5+ 7O7Y|1|B8Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)ELECTRON MICROSCOPY2.23920
838P2K|1|B5+ 8P2K|1|B8Ternary complex of translating ribosome, NAC and METAP1ELECTRON MICROSCOPY2.93920
849F1B|1|B5+ 9F1B|1|B8Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/EELECTRON MICROSCOPY3.013862
857ZJW|1|L5+ 7ZJW|1|L8Rabbit 80S ribosome as it decodes the Sec-UGA codonELECTRON MICROSCOPY2.83920
868BTK|1|B5+ 8BTK|1|B8Structure of the TRAP complex with the Sec translocon and a translating ribosomeELECTRON MICROSCOPY3.53920
876P5N|1|5+ 6P5N|1|8Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1ELECTRON MICROSCOPY3.23745
886HCF|1|52+ 6HCF|1|82Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonELECTRON MICROSCOPY3.93785
896D90|1|5+ 6D90|1|8Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.23745
906D9J|1|5+ 6D9J|1|8Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.23745
917A01|1|e2+ 7A01|1|h2The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanismELECTRON MICROSCOPY3.63981
926ZVK|1|e2+ 6ZVK|1|h2The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanismELECTRON MICROSCOPY3.494076
937NWI|1|5+ 7NWI|1|8Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin SELECTRON MICROSCOPY3.133818
947QWR|1|5+ 7QWR|1|8Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NACELECTRON MICROSCOPY2.93649
957QWQ|1|5+ 7QWQ|1|8Ternary complex of ribosome nascent chain with SRP and NACELECTRON MICROSCOPY2.833649
967OBR|1|5+ 7OBR|1|8RNC-SRP early complexELECTRON MICROSCOPY2.83649
977NFX|1|5+ 7NFX|1|8Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state AELECTRON MICROSCOPY3.23649
987QWS|1|5+ 7QWS|1|8Structure of ribosome translating beta-tubulin in complex with TTC5 and NACELECTRON MICROSCOPY3.43649
996R6P|1|5+ 6R6P|1|8Structure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.13818
1003JAI|1|5+ 3JAI|1|8Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.653818
1013JAG|1|5+ 3JAG|1|8Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.653818
1023JAH|1|5+ 3JAH|1|8Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.453818
1036FRK|1|5+ 6FRK|1|8Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexELECTRON MICROSCOPY3.73814
1043JAJ|1|5+ 3JAJ|1|8Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.753814
1053JAN|1|5+ 3JAN|1|8Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.753814
1063J92|1|5+ 3J92|1|8Structure and assembly pathway of the ribosome quality control complexELECTRON MICROSCOPY3.63818
1076GZ3|1|A2+ 6GZ3|1|A3tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)ELECTRON MICROSCOPY3.63769
1086GZ4|1|A2+ 6GZ4|1|A3tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)ELECTRON MICROSCOPY3.63769
1096GZ5|1|A2+ 6GZ5|1|A3tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.53769

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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