RNA 3D Hub //

Equivalence class NR_4.0_08417.7 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19YPH|1|A (rep)Large subunit ribosomal RNA23S rRNAPseudomonas aeruginosa PAO1BacteriaRF02541Pseudomonas aeruginosa 50S ribosome (L1 stalk 'in' conformation)Electron microscopy2.2528372026-10-21
29YLQ|1|ALarge subunit ribosomal RNA23S rRNAPseudomonas aeruginosa PAO1BacteriaRF02541Pseudomonas aeruginosa 50S ribosome (L1 stalk in 'mid' conformation)Electron microscopy2.2528372026-10-21
39YPK|1|ALarge subunit ribosomal RNA23S rRNAPseudomonas aeruginosa PAO1BacteriaRF02541Pseudomonas aeruginosa 50S ribosome (L1 stalk in 'out' conformation)Electron microscopy2.2528372026-10-21
48RWG|1|ALarge subunit ribosomal RNA23S ribosomal RNAPseudomonas aeruginosa PAO1BacteriaRF02541PAO1 wild-type ribosome, R, reference mapElectron microscopy2.4628052025-02-12
59Q42|1|ALarge subunit ribosomal RNA23S rRNAPseudomonas aeruginosa PAO1BacteriaRF02541Pseudomonas aeruginosa 50S ribosome bound to RsfS (L1 stalk 'in' conformation)Electron microscopy2.2928372026-08-26
69Q40|1|ALarge subunit ribosomal RNA23S rRNAPseudomonas aeruginosa PAO1BacteriaRF02541Pseudomonas aeruginosa 50S ribosome bound to RsfS (L1 stalk in 'mid' conformation)Electron microscopy2.2928372026-08-26
79Q43|1|ALarge subunit ribosomal RNA23S rRNAPseudomonas aeruginosa PAO1BacteriaRF02541Pseudomonas aeruginosa 50S ribosome bound to RsfS (L1 stalk in 'out' conformation)Electron microscopy2.2928372026-08-26
89YPN|1|ALarge subunit ribosomal RNA23S rRNAPseudomonas aeruginosa PAO1BacteriaRF02541Pseudomonas aeruginosa 50S ribosome (L1 stalk in 'out' conformation and missing uL1 and tRNA)Electron microscopy2.2528372026-10-21
99Q44|1|ALarge subunit ribosomal RNA23S rRNAPseudomonas aeruginosa PAO1BacteriaRF02541Pseudomonas aeruginosa 50S ribosome bound to RsfS (L1 stalk in 'out' conformation and missing uL1 and tRNA)Electron microscopy2.2928372026-08-26
107UNW|1|ALarge subunit ribosomal RNA23S Ribosomal RNAPseudomonas aeruginosa PAO1BacteriaRF02541Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)Electron microscopy2.628842022-06-22
117UNV|1|ALarge subunit ribosomal RNA23S Ribosomal RNAPseudomonas aeruginosa PAO1BacteriaRF02541Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)Electron microscopy2.728842022-06-22
127UNU|1|ALarge subunit ribosomal RNA23S Ribosomal RNAPseudomonas aeruginosa PAO1BacteriaRF02541Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)Electron microscopy2.928842022-06-22
137UNR|1|ALarge subunit ribosomal RNA23S Ribosomal RNAPseudomonas aeruginosa PAO1BacteriaRF02541Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)Electron microscopy2.928842022-06-22
146SPB|1|ALarge subunit ribosomal RNA23S ribosomal RNAPseudomonas aeruginosaBacteriaRF02541Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6Electron microscopy2.8228852019-10-16
159SY6|1|aLarge subunit ribosomal RNA23S rRNA (2890-MER)Pseudomonas aeruginosa PA14BacteriaRF02541Structural characterization of hibernating ribosomes in the Gram-negative pathogen Pseudomonas aeruginosaElectron microscopy2.628902026-10-21
166SPF|1|ALarge subunit ribosomal RNAPseudomonas aeruginosa strain PAO1 23S ribosomal RNAPseudomonas aeruginosaBacteriaRF02541Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolateElectron microscopy2.8928852019-10-23
178CD1|1|ALarge subunit ribosomal RNA23S rRNAPseudomonas aeruginosa PAO1BacteriaRF0254170S-PHIKZ014Electron microscopy328832024-01-24
186SPG|1|ALarge subunit ribosomal RNA23S ribosomal RNAPseudomonas aeruginosaBacteriaRF02541Pseudomonas aeruginosa 70s ribosome from a clinical isolateElectron microscopy3.3428832019-10-16
196SPD|1|ALarge subunit ribosomal RNA23S ribosomal RNAPseudomonas aeruginosaBacteriaRF02541Pseudomonas aeruginosa 50s ribosome from a clinical isolateElectron microscopy3.2828512019-10-16

Release history

Release4.62
Date2026-10-21

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
19Q42|1|APseudomonas aeruginosa 50S ribosome bound to RsfS (L1 stalk 'in' conformation)ELECTRON MICROSCOPY2.292837
29YPH|1|APseudomonas aeruginosa 50S ribosome (L1 stalk 'in' conformation)ELECTRON MICROSCOPY2.252837
39Q40|1|APseudomonas aeruginosa 50S ribosome bound to RsfS (L1 stalk in 'mid' conformation)ELECTRON MICROSCOPY2.292837
49YLQ|1|APseudomonas aeruginosa 50S ribosome (L1 stalk in 'mid' conformation)ELECTRON MICROSCOPY2.252837
59YPK|1|APseudomonas aeruginosa 50S ribosome (L1 stalk in 'out' conformation)ELECTRON MICROSCOPY2.252837
69Q43|1|APseudomonas aeruginosa 50S ribosome bound to RsfS (L1 stalk in 'out' conformation)ELECTRON MICROSCOPY2.292837
79SY6|1|aStructural characterization of hibernating ribosomes in the Gram-negative pathogen Pseudomonas aeruginosaELECTRON MICROSCOPY2.62890
88RWG|1|APAO1 wild-type ribosome, R, reference mapELECTRON MICROSCOPY2.462805
99Q44|1|APseudomonas aeruginosa 50S ribosome bound to RsfS (L1 stalk in 'out' conformation and missing uL1 and tRNA)ELECTRON MICROSCOPY2.292837
109YPN|1|APseudomonas aeruginosa 50S ribosome (L1 stalk in 'out' conformation and missing uL1 and tRNA)ELECTRON MICROSCOPY2.252837
116SPF|1|APseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolateELECTRON MICROSCOPY2.892885
126SPB|1|APseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6ELECTRON MICROSCOPY2.822885
138CD1|1|A70S-PHIKZ014ELECTRON MICROSCOPY32883
146SPG|1|APseudomonas aeruginosa 70s ribosome from a clinical isolateELECTRON MICROSCOPY3.342883
156SPD|1|APseudomonas aeruginosa 50s ribosome from a clinical isolateELECTRON MICROSCOPY3.282851
167UNR|1|APseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)ELECTRON MICROSCOPY2.92884
177UNW|1|APseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)ELECTRON MICROSCOPY2.62884
187UNU|1|APseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)ELECTRON MICROSCOPY2.92884
197UNV|1|APseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)ELECTRON MICROSCOPY2.72884

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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