Equivalence class NR_4.0_10255.44 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7O7Z|1|B7 (rep) | 5S ribosomal RNA | 5S | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) | Electron microscopy | 2.4 | 120 | 2021-06-02 |
| 2 | 8SCB|1|7 | 5S ribosomal RNA | 5S_rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Terminating ribosome with SRI-41315 | Electron microscopy | 2.5 | 120 | 2023-12-27 |
| 3 | 8RJB|1|u | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4 | Electron microscopy | 2.69243 | 120 | 2024-01-24 |
| 4 | 8RJD|1|u | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2 | Electron microscopy | 2.78574 | 120 | 2024-01-24 |
| 5 | 8RJC|1|u | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1 | Electron microscopy | 2.90061 | 120 | 2024-01-24 |
| 6 | 8BPO|1|B1 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER) | Electron microscopy | 2.8 | 120 | 2023-07-05 |
| 7 | 8VVQ|1|XA | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets | Electron microscopy | 2.7 | 119 | 2025-07-30 |
| 8 | 9QQA|1|B7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Ternary complex of translating ribosome, NAC and NMT1 | Electron microscopy | 2.8 | 120 | 2025-07-16 |
| 9 | 9MR4|1|7 | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | NAC: Ribosome nascent chain complex(Oxa1L) | Electron microscopy | 2.65 | 120 | 2025-08-20 | |
| 10 | 9BDL|1|A5S | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | 80S ribosome with angiogenin | Electron microscopy | 2.8 | 120 | 2024-07-24 |
| 11 | 8B6C|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147 | Electron microscopy | 2.79 | 120 | 2023-02-22 |
| 12 | 8B5L|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex | Electron microscopy | 2.86 | 120 | 2023-03-01 |
| 13 | 8P2K|1|B7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Ternary complex of translating ribosome, NAC and METAP1 | Electron microscopy | 2.9 | 119 | 2023-07-19 |
| 14 | 7UCK|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine | Electron microscopy | 2.8 | 120 | 2022-06-01 |
| 15 | 7NWI|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S | Electron microscopy | 3.13 | 120 | 2021-07-07 |
| 16 | 8VVP|1|XA | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Codon sampling state obtained from Anisomycin-treated mammalian ribosomes | Electron microscopy | 2.9 | 119 | 2025-07-30 |
| 17 | 7OBR|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | RNC-SRP early complex | Electron microscopy | 2.8 | 120 | 2021-07-21 |
| 18 | 9NDP|1|7 | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC | Electron microscopy | 2.82 | 120 | 2025-09-10 | |
| 19 | 8BHF|1|B2 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4 | Electron microscopy | 3.1 | 119 | 2023-09-06 |
| 20 | 9F1B|1|B7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E | Electron microscopy | 3.01 | 119 | 2024-08-21 |
| 21 | 7TOR|1|A5S | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | Electron microscopy | 2.9 | 120 | 2022-05-25 |
| 22 | 6P5I|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1) | Electron microscopy | 3.1 | 119 | 2019-09-18 |
| 23 | 6R5Q|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of XBP1u-paused ribosome nascent chain complex (post-state) | Electron microscopy | 3 | 120 | 2019-07-10 |
| 24 | 7UCJ|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian 80S translation initiation complex with mRNA and Harringtonine | Electron microscopy | 3.1 | 120 | 2022-06-01 |
| 25 | 6P5K|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3) | Electron microscopy | 3.1 | 119 | 2019-09-18 |
| 26 | 7O81|1|B7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot | Electron microscopy | 3.1 | 120 | 2021-06-02 |
| 27 | 9BDN|1|A5S | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | 80S ribosome with angiogenin and tRNAAla | Electron microscopy | 3.1 | 120 | 2024-07-24 |
| 28 | 7ZJX|1|L7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome programmed with SECIS and SBP2 | Electron microscopy | 3.1 | 120 | 2022-09-07 |
| 29 | 6P5N|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1 | Electron microscopy | 3.2 | 119 | 2019-09-25 |
| 30 | 6R6P|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of XBP1u-paused ribosome nascent chain complex (rotated state) | Electron microscopy | 3.1 | 120 | 2019-07-10 |
| 31 | 7TM3|1|u | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon | Electron microscopy | 3.25 | 120 | 2022-10-19 |
| 32 | 6MTD|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel) | Electron microscopy | 3.3 | 120 | 2018-11-21 |
| 33 | 7TOQ|1|A5S | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR | Electron microscopy | 3.1 | 120 | 2022-05-25 |
| 34 | 8VVT|1|XA | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian ribosomes bound to Anisomycin in the rotated conformation | Electron microscopy | 2.9 | 120 | 2025-07-30 |
| 35 | 7MDZ|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | 80S rabbit ribosome stalled with benzamide-CHX | Electron microscopy | 3.2 | 119 | 2021-09-01 |
| 36 | 9F1D|1|B7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK | Electron microscopy | 3.26 | 119 | 2024-08-21 |
| 37 | 5LZS|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | Electron microscopy | 3.31 | 119 | 2016-11-30 |
| 38 | 6MTE|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state) | Electron microscopy | 3.4 | 120 | 2018-11-21 |
| 39 | 5LZV|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | Electron microscopy | 3.35 | 120 | 2016-11-30 |
| 40 | 6MTC|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state) | Electron microscopy | 3.4 | 120 | 2018-11-21 |
| 41 | 5LZZ|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | Electron microscopy | 3.47 | 120 | 2016-11-30 |
| 42 | 9QQB|1|B7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Quaternary complex of a translating ribosome, NAC, NMT1, and NatA | Electron microscopy | 3.43 | 120 | 2025-07-16 |
| 43 | 7NFX|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A | Electron microscopy | 3.2 | 120 | 2021-06-02 |
| 44 | 6P5J|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2) | Electron microscopy | 3.1 | 119 | 2019-09-18 |
| 45 | 8VVR|1|XA | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes | Electron microscopy | 3.1 | 119 | 2025-07-30 |
| 46 | 8VVS|1|XA | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes | Electron microscopy | 3.1 | 119 | 2025-07-30 |
| 47 | 6MTB|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state) | Electron microscopy | 3.6 | 120 | 2018-11-21 |
| 48 | 8VFT|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Translating 80S rabbit ribosome stalled by emetine with eEF2 | Electron microscopy | 3.3 | 120 | 2024-12-25 |
| 49 | 5LZW|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | Electron microscopy | 3.53 | 120 | 2016-11-30 |
| 50 | 6ZVK|1|d2 | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Oryctolagus cuniculus | Eukarya | RF00001 | The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism | Electron microscopy | 3.49 | 120 | 2020-12-23 |
| 51 | 6FRK|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex | Electron microscopy | 3.7 | 120 | 2018-03-28 |
| 52 | 8VVV|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian ribosomes bound to Anisomycin in the nonrotated conformation | Electron microscopy | 3.1 | 120 | 2025-07-30 |
| 53 | 7A01|1|d2 | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Oryctolagus cuniculus | Eukarya | RF00001 | The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism | Electron microscopy | 3.6 | 120 | 2020-12-30 |
| 54 | 5LZT|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | Electron microscopy | 3.65 | 120 | 2016-11-30 |
| 55 | 3JAH|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | Electron microscopy | 3.45 | 120 | 2015-08-12 |
| 56 | 7NWG|1|71 | 5S ribosomal RNA | 5S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S. | Electron microscopy | 3.8 | 120 | 2021-07-07 |
| 57 | 7QWR|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC | Electron microscopy | 2.9 | 120 | 2022-03-09 |
| 58 | 6GZ5|1|A4 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3) | Electron microscopy | 3.5 | 119 | 2018-12-05 |
| 59 | 9F1C|1|B7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E | Electron microscopy | 3.78 | 119 | 2024-08-21 |
| 60 | 5LZU|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | Electron microscopy | 3.75 | 120 | 2016-11-30 |
| 61 | 7TUT|1|u | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon | Electron microscopy | 3.88 | 120 | 2022-10-19 |
| 62 | 6D90|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | Electron microscopy | 3.2 | 119 | 2018-06-06 |
| 63 | 9BDP|1|A5S | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla | Electron microscopy | 3.7 | 120 | 2024-07-24 |
| 64 | 7QWQ|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Ternary complex of ribosome nascent chain with SRP and NAC | Electron microscopy | 2.83 | 120 | 2022-03-16 |
| 65 | 6HCF|1|72 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon | Electron microscopy | 3.9 | 120 | 2018-10-17 |
| 66 | 3JAG|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | Electron microscopy | 3.65 | 120 | 2015-08-12 |
| 67 | 6GZ4|1|A4 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2) | Electron microscopy | 3.6 | 119 | 2018-12-05 |
| 68 | 6GZ3|1|A4 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) | Electron microscopy | 3.6 | 119 | 2018-12-05 |
| 69 | 6R6G|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of XBP1u-paused ribosome nascent chain complex with SRP. | Electron microscopy | 3.7 | 120 | 2019-07-10 |
| 70 | 5LZY|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. | Electron microscopy | 3.99 | 120 | 2016-11-30 |
| 71 | 6D9J|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | Electron microscopy | 3.2 | 119 | 2018-06-06 |
| 72 | 3JAI|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | Electron microscopy | 3.65 | 120 | 2015-08-12 |
| 73 | 6HCJ|1|71 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs | Electron microscopy | 3.8 | 120 | 2018-10-17 |
| 74 | 6R7Q|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of XBP1u-paused ribosome nascent chain complex with Sec61. | Electron microscopy | 3.9 | 120 | 2019-07-10 |
| 75 | 5LZX|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | Electron microscopy | 3.67 | 120 | 2016-11-30 |
| 76 | 3J92|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure and assembly pathway of the ribosome quality control complex | Electron microscopy | 3.6 | 120 | 2015-01-21 |
| 77 | 8VVU|1|XA | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA | Electron microscopy | 3.8 | 119 | 2025-07-30 |
| 78 | 7QWS|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC | Electron microscopy | 3.4 | 120 | 2022-03-09 |
| 79 | 6T59|1|74 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex | Electron microscopy | 3.11 | 120 | 2019-11-27 |
| 80 | 3JAJ|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the engaged state of the mammalian SRP-ribosome complex | Electron microscopy | 3.75 | 120 | 2015-08-05 |
| 81 | 3JAN|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the scanning state of the mammalian SRP-ribosome complex | Electron microscopy | 3.75 | 120 | 2015-08-05 |
| 82 | 7O7Y|1|B7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) | Electron microscopy | 2.2 | 120 | 2021-06-02 |
| 83 | 7ZJW|1|L7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome as it decodes the Sec-UGA codon | Electron microscopy | 2.8 | 119 | 2022-10-19 |
| 84 | 7O80|1|B7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site | Electron microscopy | 2.9 | 119 | 2021-06-02 |
| 85 | 6SGC|1|74 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome stalled on a poly(A) tail | Electron microscopy | 2.8 | 119 | 2019-12-04 |
| 86 | 8BTK|1|B7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the TRAP complex with the Sec translocon and a translating ribosome | Electron microscopy | 3.5 | 119 | 2023-05-24 |
| 87 | 7OYD|1|K | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b | Electron microscopy | 2.3 | 119 | 2022-07-20 |
Release history
| Release | 4.4 |
|---|---|
| Date | 2025-09-10 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 6ZVK|1|d2 | The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism | ELECTRON MICROSCOPY | 3.49 | 120 | |
| 2 | 7A01|1|d2 | The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism | ELECTRON MICROSCOPY | 3.6 | 120 | |
| 3 | 8VFT|1|7 | Translating 80S rabbit ribosome stalled by emetine with eEF2 | ELECTRON MICROSCOPY | 3.3 | 120 | |
| 4 | 3JAN|1|7 | Structure of the scanning state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 120 | |
| 5 | 3JAJ|1|7 | Structure of the engaged state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 120 | |
| 6 | 6P5J|1|7 | Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2) | ELECTRON MICROSCOPY | 3.1 | 119 | |
| 7 | 8RJB|1|u | Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4 | ELECTRON MICROSCOPY | 2.69243 | 120 | |
| 8 | 8RJC|1|u | Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1 | ELECTRON MICROSCOPY | 2.90061 | 120 | |
| 9 | 8RJD|1|u | Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2 | ELECTRON MICROSCOPY | 2.78574 | 120 | |
| 10 | 7OYD|1|K | Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b | ELECTRON MICROSCOPY | 2.3 | 119 | |
| 11 | 7ZJW|1|L7 | Rabbit 80S ribosome as it decodes the Sec-UGA codon | ELECTRON MICROSCOPY | 2.8 | 119 | |
| 12 | 7O81|1|B7 | Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot | ELECTRON MICROSCOPY | 3.1 | 120 | |
| 13 | 9QQA|1|B7 | Ternary complex of translating ribosome, NAC and NMT1 | ELECTRON MICROSCOPY | 2.8 | 120 | |
| 14 | 9QQB|1|B7 | Quaternary complex of a translating ribosome, NAC, NMT1, and NatA | ELECTRON MICROSCOPY | 3.43 | 120 | |
| 15 | 9F1C|1|B7 | Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E | ELECTRON MICROSCOPY | 3.78 | 119 | |
| 16 | 9F1D|1|B7 | Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK | ELECTRON MICROSCOPY | 3.26 | 119 | |
| 17 | 9F1B|1|B7 | Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E | ELECTRON MICROSCOPY | 3.01 | 119 | |
| 18 | 8P2K|1|B7 | Ternary complex of translating ribosome, NAC and METAP1 | ELECTRON MICROSCOPY | 2.9 | 119 | |
| 19 | 8BTK|1|B7 | Structure of the TRAP complex with the Sec translocon and a translating ribosome | ELECTRON MICROSCOPY | 3.5 | 119 | |
| 20 | 7O80|1|B7 | Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site | ELECTRON MICROSCOPY | 2.9 | 119 | |
| 21 | 7O7Z|1|B7 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) | ELECTRON MICROSCOPY | 2.4 | 120 | |
| 22 | 7O7Y|1|B7 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) | ELECTRON MICROSCOPY | 2.2 | 120 | |
| 23 | 7ZJX|1|L7 | Rabbit 80S ribosome programmed with SECIS and SBP2 | ELECTRON MICROSCOPY | 3.1 | 120 | |
| 24 | 6P5K|1|7 | Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3) | ELECTRON MICROSCOPY | 3.1 | 119 | |
| 25 | 6P5I|1|7 | Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1) | ELECTRON MICROSCOPY | 3.1 | 119 | |
| 26 | 8SCB|1|7 | Terminating ribosome with SRI-41315 | ELECTRON MICROSCOPY | 2.5 | 120 | |
| 27 | 8BHF|1|B2 | Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4 | ELECTRON MICROSCOPY | 3.1 | 119 | |
| 28 | 6MTC|1|7 | Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state) | ELECTRON MICROSCOPY | 3.4 | 120 | |
| 29 | 6MTB|1|7 | Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state) | ELECTRON MICROSCOPY | 3.6 | 120 | |
| 30 | 6MTD|1|7 | Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel) | ELECTRON MICROSCOPY | 3.3 | 120 | |
| 31 | 6MTE|1|7 | Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state) | ELECTRON MICROSCOPY | 3.4 | 120 | |
| 32 | 7MDZ|1|7 | 80S rabbit ribosome stalled with benzamide-CHX | ELECTRON MICROSCOPY | 3.2 | 119 | |
| 33 | 6FRK|1|7 | Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex | ELECTRON MICROSCOPY | 3.7 | 120 | |
| 34 | 3J92|1|7 | Structure and assembly pathway of the ribosome quality control complex | ELECTRON MICROSCOPY | 3.6 | 120 | |
| 35 | 3JAG|1|7 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | ELECTRON MICROSCOPY | 3.65 | 120 | |
| 36 | 3JAH|1|7 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | ELECTRON MICROSCOPY | 3.45 | 120 | |
| 37 | 3JAI|1|7 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | ELECTRON MICROSCOPY | 3.65 | 120 | |
| 38 | 5LZY|1|7 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. | ELECTRON MICROSCOPY | 3.99 | 120 | |
| 39 | 5LZZ|1|7 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | ELECTRON MICROSCOPY | 3.47 | 120 | |
| 40 | 5LZX|1|7 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | ELECTRON MICROSCOPY | 3.67 | 120 | |
| 41 | 5LZW|1|7 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | ELECTRON MICROSCOPY | 3.53 | 120 | |
| 42 | 5LZT|1|7 | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | ELECTRON MICROSCOPY | 3.65 | 120 | |
| 43 | 5LZS|1|7 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | ELECTRON MICROSCOPY | 3.31 | 119 | |
| 44 | 5LZU|1|7 | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | ELECTRON MICROSCOPY | 3.75 | 120 | |
| 45 | 5LZV|1|7 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | ELECTRON MICROSCOPY | 3.35 | 120 | |
| 46 | 6T59|1|74 | Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex | ELECTRON MICROSCOPY | 3.11 | 120 | |
| 47 | 6R7Q|1|7 | Structure of XBP1u-paused ribosome nascent chain complex with Sec61. | ELECTRON MICROSCOPY | 3.9 | 120 | |
| 48 | 6SGC|1|74 | Rabbit 80S ribosome stalled on a poly(A) tail | ELECTRON MICROSCOPY | 2.8 | 119 | |
| 49 | 9BDL|1|A5S | 80S ribosome with angiogenin | ELECTRON MICROSCOPY | 2.8 | 120 | |
| 50 | 9BDN|1|A5S | 80S ribosome with angiogenin and tRNAAla | ELECTRON MICROSCOPY | 3.1 | 120 | |
| 51 | 9BDP|1|A5S | 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla | ELECTRON MICROSCOPY | 3.7 | 120 | |
| 52 | 6P5N|1|7 | Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1 | ELECTRON MICROSCOPY | 3.2 | 119 | |
| 53 | 7UCJ|1|7 | Mammalian 80S translation initiation complex with mRNA and Harringtonine | ELECTRON MICROSCOPY | 3.1 | 120 | |
| 54 | 7UCK|1|7 | 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine | ELECTRON MICROSCOPY | 2.8 | 120 | |
| 55 | 8B5L|1|7 | Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex | ELECTRON MICROSCOPY | 2.86 | 120 | |
| 56 | 8B6C|1|7 | Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147 | ELECTRON MICROSCOPY | 2.79 | 120 | |
| 57 | 7TM3|1|u | Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon | ELECTRON MICROSCOPY | 3.25 | 120 | |
| 58 | 7TUT|1|u | Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon | ELECTRON MICROSCOPY | 3.88 | 120 | |
| 59 | 8VVV|1|7 | Mammalian ribosomes bound to Anisomycin in the nonrotated conformation | ELECTRON MICROSCOPY | 3.1 | 120 | |
| 60 | 8BPO|1|B1 | Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER) | ELECTRON MICROSCOPY | 2.8 | 120 | |
| 61 | 8VVQ|1|XA | Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets | ELECTRON MICROSCOPY | 2.7 | 119 | |
| 62 | 8VVP|1|XA | Codon sampling state obtained from Anisomycin-treated mammalian ribosomes | ELECTRON MICROSCOPY | 2.9 | 119 | |
| 63 | 8VVT|1|XA | Mammalian ribosomes bound to Anisomycin in the rotated conformation | ELECTRON MICROSCOPY | 2.9 | 120 | |
| 64 | 8VVS|1|XA | Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes | ELECTRON MICROSCOPY | 3.1 | 119 | |
| 65 | 8VVR|1|XA | Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes | ELECTRON MICROSCOPY | 3.1 | 119 | |
| 66 | 8VVU|1|XA | Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA | ELECTRON MICROSCOPY | 3.8 | 119 | |
| 67 | 7NFX|1|7 | Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A | ELECTRON MICROSCOPY | 3.2 | 120 | |
| 68 | 7OBR|1|7 | RNC-SRP early complex | ELECTRON MICROSCOPY | 2.8 | 120 | |
| 69 | 9MR4|1|7 | NAC: Ribosome nascent chain complex(Oxa1L) | ELECTRON MICROSCOPY | 2.65 | 120 | |
| 70 | 7TOR|1|A5S | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | ELECTRON MICROSCOPY | 2.9 | 120 | |
| 71 | 9NDP|1|7 | Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC | ELECTRON MICROSCOPY | 2.82 | 120 | |
| 72 | 6R5Q|1|7 | Structure of XBP1u-paused ribosome nascent chain complex (post-state) | ELECTRON MICROSCOPY | 3 | 120 | |
| 73 | 6R6G|1|7 | Structure of XBP1u-paused ribosome nascent chain complex with SRP. | ELECTRON MICROSCOPY | 3.7 | 120 | |
| 74 | 7TOQ|1|A5S | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR | ELECTRON MICROSCOPY | 3.1 | 120 | |
| 75 | 6R6P|1|7 | Structure of XBP1u-paused ribosome nascent chain complex (rotated state) | ELECTRON MICROSCOPY | 3.1 | 120 | |
| 76 | 7QWS|1|7 | Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC | ELECTRON MICROSCOPY | 3.4 | 120 | |
| 77 | 7QWQ|1|7 | Ternary complex of ribosome nascent chain with SRP and NAC | ELECTRON MICROSCOPY | 2.83 | 120 | |
| 78 | 7QWR|1|7 | Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC | ELECTRON MICROSCOPY | 2.9 | 120 | |
| 79 | 6GZ3|1|A4 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) | ELECTRON MICROSCOPY | 3.6 | 119 | |
| 80 | 6GZ5|1|A4 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3) | ELECTRON MICROSCOPY | 3.5 | 119 | |
| 81 | 6GZ4|1|A4 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2) | ELECTRON MICROSCOPY | 3.6 | 119 | |
| 82 | 6D9J|1|7 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 119 | |
| 83 | 7NWI|1|7 | Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S | ELECTRON MICROSCOPY | 3.13 | 120 | |
| 84 | 6D90|1|7 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 119 | |
| 85 | 6HCF|1|72 | Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon | ELECTRON MICROSCOPY | 3.9 | 120 | |
| 86 | 7NWG|1|71 | Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S. | ELECTRON MICROSCOPY | 3.8 | 120 | |
| 87 | 6HCJ|1|71 | Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs | ELECTRON MICROSCOPY | 3.8 | 120 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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