NR_4.0_13899.2

Members (12)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	4WZJ\|1\|XXX (rep)		U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.	Homo sapiens			Spliceosomal U4 snRNP core domain	X-ray diffraction	3.6	68	2015-01-14
2	4WZJ\|1\|VV		U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.	Homo sapiens			Spliceosomal U4 snRNP core domain	X-ray diffraction	3.6	68	2015-01-14
3	4WZJ\|1\|YY		U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.	Homo sapiens			Spliceosomal U4 snRNP core domain	X-ray diffraction	3.6	68	2015-01-14
4	4WZJ\|1\|VVV		U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.	Homo sapiens			Spliceosomal U4 snRNP core domain	X-ray diffraction	3.6	68	2015-01-14
5	4WZJ\|1\|YYYY		U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.	Homo sapiens			Spliceosomal U4 snRNP core domain	X-ray diffraction	3.6	68	2015-01-14
6	4WZJ\|1\|XX		U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.	Homo sapiens			Spliceosomal U4 snRNP core domain	X-ray diffraction	3.6	68	2015-01-14
7	4WZJ\|1\|V		U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.	Homo sapiens			Spliceosomal U4 snRNP core domain	X-ray diffraction	3.6	68	2015-01-14
8	4WZJ\|1\|XXXX		U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.	Homo sapiens			Spliceosomal U4 snRNP core domain	X-ray diffraction	3.6	68	2015-01-14
9	4WZJ\|1\|YYY		U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.	Homo sapiens			Spliceosomal U4 snRNP core domain	X-ray diffraction	3.6	68	2015-01-14
10	4WZJ\|1\|VVVV		U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.	Homo sapiens			Spliceosomal U4 snRNP core domain	X-ray diffraction	3.6	68	2015-01-14
11	4WZJ\|1\|X		U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.	Homo sapiens			Spliceosomal U4 snRNP core domain	X-ray diffraction	3.6	68	2015-01-14
12	4WZJ\|1\|Y		U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.	Homo sapiens			Spliceosomal U4 snRNP core domain	X-ray diffraction	3.6	68	2015-01-14

Release history

Release	3.378	3.379	3.380	3.381	3.382	3.383	3.384	3.385	3.386	3.387	3.388	3.389	3.390	3.391
Date	2025-03-13	2025-03-19	2025-03-26	2025-04-02	2025-04-09	2025-04-16	2025-04-23	2025-04-30	2025-05-07	2025-05-14	2025-05-21	2025-05-28	2025-06-04	2025-06-11

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	View	PDB	Title	Method	Resolution	#NTs
1		4WZJ\|1\|Y	Spliceosomal U4 snRNP core domain	X-RAY DIFFRACTION	3.6	68
2		4WZJ\|1\|X	Spliceosomal U4 snRNP core domain	X-RAY DIFFRACTION	3.6	68
3		4WZJ\|1\|VV	Spliceosomal U4 snRNP core domain	X-RAY DIFFRACTION	3.6	68
4		4WZJ\|1\|VVVV	Spliceosomal U4 snRNP core domain	X-RAY DIFFRACTION	3.6	68
5		4WZJ\|1\|XXX	Spliceosomal U4 snRNP core domain	X-RAY DIFFRACTION	3.6	68
6		4WZJ\|1\|YY	Spliceosomal U4 snRNP core domain	X-RAY DIFFRACTION	3.6	68
7		4WZJ\|1\|YYYY	Spliceosomal U4 snRNP core domain	X-RAY DIFFRACTION	3.6	68
8		4WZJ\|1\|XXXX	Spliceosomal U4 snRNP core domain	X-RAY DIFFRACTION	3.6	68
9		4WZJ\|1\|VVV	Spliceosomal U4 snRNP core domain	X-RAY DIFFRACTION	3.6	68
10		4WZJ\|1\|YYY	Spliceosomal U4 snRNP core domain	X-RAY DIFFRACTION	3.6	68
11		4WZJ\|1\|XX	Spliceosomal U4 snRNP core domain	X-RAY DIFFRACTION	3.6	68
12		4WZJ\|1\|V	Spliceosomal U4 snRNP core domain	X-RAY DIFFRACTION	3.6	68

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

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