Equivalence class NR_4.0_16515.5 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9ZWU|1|F (rep) | RNA (5'-r(ApUpA)-3') or 5'-phosphorylated RNA (5'-r(pApUpA)-3') | synthetic construct | Crystal structure of the N4BP2 polynucleotide kinase domain complexed with ATP or ADP, Mg, and the trinucleotide substrate AUA or its 5'-phosphorylated product pAUA. | X-ray diffraction | 2.23 | 3 | 2026-09-23 | |||
| 2 | 7N06|1|G | RNA (5'-R(*AP*UP*A)-3') | Homo sapiens | SARS-CoV-2 Nsp15 endoribonuclease post-cleavage state | Electron microscopy | 2.2 | 3 | 2021-06-02 | |||
| 3 | 7N06|1|H | RNA (5'-R(*AP*UP*A)-3') | Homo sapiens | SARS-CoV-2 Nsp15 endoribonuclease post-cleavage state | Electron microscopy | 2.2 | 3 | 2021-06-02 | |||
| 4 | 9ZWU|1|D | RNA (5'-r(ApUpA)-3') or 5'-phosphorylated RNA (5'-r(pApUpA)-3') | synthetic construct | Crystal structure of the N4BP2 polynucleotide kinase domain complexed with ATP or ADP, Mg, and the trinucleotide substrate AUA or its 5'-phosphorylated product pAUA. | X-ray diffraction | 2.23 | 3 | 2026-09-23 | |||
| 5 | 7N06|1|I | RNA (5'-R(*AP*UP*A)-3') | Homo sapiens | SARS-CoV-2 Nsp15 endoribonuclease post-cleavage state | Electron microscopy | 2.2 | 3 | 2021-06-02 | |||
| 6 | 9ZWU|1|E | RNA (5'-r(ApUpA)-3') or 5'-phosphorylated RNA (5'-r(pApUpA)-3') | synthetic construct | Crystal structure of the N4BP2 polynucleotide kinase domain complexed with ATP or ADP, Mg, and the trinucleotide substrate AUA or its 5'-phosphorylated product pAUA. | X-ray diffraction | 2.23 | 3 | 2026-09-23 | |||
| 7 | 8QRN|1|6 | mRNA | Homo sapiens | mt-SSU in GTPBP8 knock-out cells, state 4 | Electron microscopy | 2.98 | 3 | 2024-06-26 | |||
| 8 | 7N06|1|L | RNA (5'-R(*AP*UP*A)-3') | Homo sapiens | SARS-CoV-2 Nsp15 endoribonuclease post-cleavage state | Electron microscopy | 2.2 | 3 | 2021-06-02 | |||
| 9 | 7N06|1|J | RNA (5'-R(*AP*UP*A)-3') | Homo sapiens | SARS-CoV-2 Nsp15 endoribonuclease post-cleavage state | Electron microscopy | 2.2 | 3 | 2021-06-02 | |||
| 10 | 7N06|1|K | RNA (5'-R(*AP*UP*A)-3') | Homo sapiens | SARS-CoV-2 Nsp15 endoribonuclease post-cleavage state | Electron microscopy | 2.2 | 3 | 2021-06-02 | |||
| 11 | 7N33|1|H | RNA (5'-R(*A)-D(*(UFT))-R(P*A)-3') | Homo sapiens | SARS-CoV-2 Nsp15 endoribonuclease pre-cleavage state | Electron microscopy | 2.5 | 2 | 2021-06-09 | |||
| 12 | 7N33|1|I | RNA (5'-R(*A)-D(*(UFT))-R(P*A)-3') | Homo sapiens | SARS-CoV-2 Nsp15 endoribonuclease pre-cleavage state | Electron microscopy | 2.5 | 2 | 2021-06-09 | |||
| 13 | 7N33|1|G | RNA (5'-R(*A)-D(*(UFT))-R(P*A)-3') | Homo sapiens | SARS-CoV-2 Nsp15 endoribonuclease pre-cleavage state | Electron microscopy | 2.5 | 2 | 2021-06-09 | |||
| 14 | 7N33|1|J | RNA (5'-R(*A)-D(*(UFT))-R(P*A)-3') | Homo sapiens | SARS-CoV-2 Nsp15 endoribonuclease pre-cleavage state | Electron microscopy | 2.5 | 2 | 2021-06-09 | |||
| 15 | 7N33|1|L | RNA (5'-R(*A)-D(*(UFT))-R(P*A)-3') | Homo sapiens | SARS-CoV-2 Nsp15 endoribonuclease pre-cleavage state | Electron microscopy | 2.5 | 2 | 2021-06-09 | |||
| 16 | 7N33|1|K | RNA (5'-R(*A)-D(*(UFT))-R(P*A)-3') | Homo sapiens | SARS-CoV-2 Nsp15 endoribonuclease pre-cleavage state | Electron microscopy | 2.5 | 2 | 2021-06-09 |
Release history
| Release | 4.58 |
|---|---|
| Date | 2026-09-23 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9ZWU|1|F | Crystal structure of the N4BP2 polynucleotide kinase domain complexed with ATP or ADP, Mg, and the trinucleotide substrate AUA or its 5'-phosphorylated product pAUA. | X-RAY DIFFRACTION | 2.23 | 3 | |
| 2 | 7N06|1|I | SARS-CoV-2 Nsp15 endoribonuclease post-cleavage state | ELECTRON MICROSCOPY | 2.2 | 3 | |
| 3 | 9ZWU|1|E | Crystal structure of the N4BP2 polynucleotide kinase domain complexed with ATP or ADP, Mg, and the trinucleotide substrate AUA or its 5'-phosphorylated product pAUA. | X-RAY DIFFRACTION | 2.23 | 3 | |
| 4 | 9ZWU|1|D | Crystal structure of the N4BP2 polynucleotide kinase domain complexed with ATP or ADP, Mg, and the trinucleotide substrate AUA or its 5'-phosphorylated product pAUA. | X-RAY DIFFRACTION | 2.23 | 3 | |
| 5 | 7N06|1|H | SARS-CoV-2 Nsp15 endoribonuclease post-cleavage state | ELECTRON MICROSCOPY | 2.2 | 3 | |
| 6 | 7N06|1|G | SARS-CoV-2 Nsp15 endoribonuclease post-cleavage state | ELECTRON MICROSCOPY | 2.2 | 3 | |
| 7 | 7N33|1|K | SARS-CoV-2 Nsp15 endoribonuclease pre-cleavage state | ELECTRON MICROSCOPY | 2.5 | 2 | |
| 8 | 7N33|1|L | SARS-CoV-2 Nsp15 endoribonuclease pre-cleavage state | ELECTRON MICROSCOPY | 2.5 | 2 | |
| 9 | 7N33|1|J | SARS-CoV-2 Nsp15 endoribonuclease pre-cleavage state | ELECTRON MICROSCOPY | 2.5 | 2 | |
| 10 | 7N33|1|I | SARS-CoV-2 Nsp15 endoribonuclease pre-cleavage state | ELECTRON MICROSCOPY | 2.5 | 2 | |
| 11 | 8QRN|1|6 | mt-SSU in GTPBP8 knock-out cells, state 4 | ELECTRON MICROSCOPY | 2.98 | 3 | |
| 12 | 7N06|1|K | SARS-CoV-2 Nsp15 endoribonuclease post-cleavage state | ELECTRON MICROSCOPY | 2.2 | 3 | |
| 13 | 7N06|1|L | SARS-CoV-2 Nsp15 endoribonuclease post-cleavage state | ELECTRON MICROSCOPY | 2.2 | 3 | |
| 14 | 7N06|1|J | SARS-CoV-2 Nsp15 endoribonuclease post-cleavage state | ELECTRON MICROSCOPY | 2.2 | 3 | |
| 15 | 7N33|1|H | SARS-CoV-2 Nsp15 endoribonuclease pre-cleavage state | ELECTRON MICROSCOPY | 2.5 | 2 | |
| 16 | 7N33|1|G | SARS-CoV-2 Nsp15 endoribonuclease pre-cleavage state | ELECTRON MICROSCOPY | 2.5 | 2 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: