RNA 3D Hub //

Equivalence class NR_4.0_17996.6 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
14J7L|1|B (rep)RNA (5'-R(P*UP*UP*UP*UP*U)-3')synthetic constructCrystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ionsX-ray diffraction1.852013-03-27
25W0M|1|JU5 single-stranded RNAsynthetic constructStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-ray diffraction2.342017-06-28
35BUD|1|ERNA (5'-R(P*UP*UP*UP*U)-3')Candida albicansCrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-ray diffraction1.9952015-07-08
45W0M|1|IU5 single-stranded RNAsynthetic constructStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-ray diffraction2.342017-06-28
55W0M|1|HU5 single-stranded RNAsynthetic constructStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-ray diffraction2.342017-06-28
64J7M|1|BRNA (5'-R(P*UP*(U37)P*(U37)P*UP*U)-3')synthetic constructCrystal structure of mouse DXO in complex with substrate mimic RNA and calcium ionX-ray diffraction1.752013-03-27
75BUD|1|DRNA (5'-R(P*UP*UP*UP*U)-3')Candida albicansCrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-ray diffraction1.9942015-07-08
86A4E|1|BRNA (5'-R(P*UP*UP*UP*UP*U)-3')synthetic constructTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-ray diffraction2.4522019-03-13
96A4E|1|DRNA (5'-R(P*UP*UP*UP*UP*U)-3')synthetic constructTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-ray diffraction2.4522019-03-13
108ACB|1|BSingle-stranded RNAIpomoea batatasCryoEM structure of sweet potato feathery mottle virus VLPElectron microscopy2.652023-05-17
118ACC|1|BSingle-stranded RNANicotiana tabacumCryoEM structure of sweet potato mild mottle virus VLPElectron microscopy2.952023-05-17
127OG6|1|RRNA (5'-R(P*UP*UP*UP*UP*U)-3')Alternanthera mosaic virusStructure of Alternanthera Mosaic VLP by cryoEMElectron microscopy3.352021-06-23
136HXX|1|AaRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
146HXX|1|AbRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
156HXX|1|AcRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
166HXX|1|AdRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
176HXX|1|AeRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
186HXX|1|AfRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
196HXX|1|AgRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
206HXX|1|AhRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
216HXX|1|AiRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
226HXX|1|AjRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
236HXX|1|AkRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
246HXX|1|AlRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
256HXX|1|AmRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
266HXX|1|AnRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
276HXX|1|AoRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
286HXX|1|ApRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
296HXX|1|AqRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
306HXX|1|ArRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
316HXX|1|AsRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
326HXX|1|AtRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
336HXX|1|AuRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
346HXX|1|AvRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
356HXX|1|AwRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
366HXX|1|AxRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
376HXX|1|AyRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
386HXX|1|AzRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
396HXX|1|BaRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
406HXX|1|BbRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
416HXX|1|BcRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
426HXX|1|BdRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
436HXX|1|BeRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
446HXX|1|BfRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
456HXX|1|BgRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
466HXX|1|BhRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
476HXX|1|BiRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.452019-08-07
487Z52|1|RRNA (5'-R(P*UP*UP*UP*UP*U)-3')synthetic constructHuman NEXT dimer - focused reconstruction of the single MTR4Electron microscopy3.452022-06-22
495FN1|1|B5'-R(*UP*UP*UP*UP*UP)-3'Pepino mosaic virusElectron cryo-microscopy of filamentous flexible virus PepMV (Pepino Mosaic Virus)Electron microscopy3.952015-12-30
505ODV|1|aRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
515ODV|1|bRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
525ODV|1|cRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
535ODV|1|dRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
545ODV|1|eRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
555ODV|1|fRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
565ODV|1|gRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
575ODV|1|hRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
585ODV|1|iRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
595ODV|1|jRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
605ODV|1|kRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
615ODV|1|lRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
625ODV|1|mRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
635ODV|1|nRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
645ODV|1|oRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
655ODV|1|pRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
665ODV|1|qRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
675ODV|1|rRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
685ODV|1|sRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
695ODV|1|tRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
705ODV|1|uRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
715ODV|1|vRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
725ODV|1|wRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27
735ODV|1|xRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy452017-09-27

Release history

Release3.2833.2843.2853.2863.2873.2883.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.318
Date2023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-17

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_17996.6NR_4.0_17996.53.283(71) 4J7L|1|B, 4J7M|1|B, 5BUD|1|D, 5BUD|1|E, 5FN1|1|B, 5ODV|1|a, 5ODV|1|b, 5ODV|1|c, 5ODV|1|d, 5ODV|1|e, 5ODV|1|f, 5ODV|1|g, 5ODV|1|h, 5ODV|1|i, 5ODV|1|j, 5ODV|1|k, 5ODV|1|l, 5ODV|1|m, 5ODV|1|n, 5ODV|1|o, 5ODV|1|p, 5ODV|1|q, 5ODV|1|r, 5ODV|1|s, 5ODV|1|t, 5ODV|1|u, 5ODV|1|v, 5ODV|1|w, 5ODV|1|x, 5W0M|1|H, 5W0M|1|I, 5W0M|1|J, 6A4E|1|B, 6A4E|1|D, 6HXX|1|Aa, 6HXX|1|Ab, 6HXX|1|Ac, 6HXX|1|Ad, 6HXX|1|Ae, 6HXX|1|Af, 6HXX|1|Ag, 6HXX|1|Ah, 6HXX|1|Ai, 6HXX|1|Aj, 6HXX|1|Ak, 6HXX|1|Al, 6HXX|1|Am, 6HXX|1|An, 6HXX|1|Ao, 6HXX|1|Ap, 6HXX|1|Aq, 6HXX|1|Ar, 6HXX|1|As, 6HXX|1|At, 6HXX|1|Au, 6HXX|1|Av, 6HXX|1|Aw, 6HXX|1|Ax, 6HXX|1|Ay, 6HXX|1|Az, 6HXX|1|Ba, 6HXX|1|Bb, 6HXX|1|Bc, 6HXX|1|Bd, 6HXX|1|Be, 6HXX|1|Bf, 6HXX|1|Bg, 6HXX|1|Bh, 6HXX|1|Bi, 7OG6|1|R, 7Z52|1|R(2) 8ACB|1|B, 8ACC|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
16A4E|1|DTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-RAY DIFFRACTION2.452
26A4E|1|BTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-RAY DIFFRACTION2.452
37OG6|1|RStructure of Alternanthera Mosaic VLP by cryoEMELECTRON MICROSCOPY3.35
45BUD|1|DCrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-RAY DIFFRACTION1.994
55BUD|1|ECrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-RAY DIFFRACTION1.995
65ODV|1|fStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
75ODV|1|uStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
85ODV|1|tStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
95ODV|1|wStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
105ODV|1|sStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
115ODV|1|gStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
125ODV|1|oStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
135ODV|1|hStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
145ODV|1|lStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
155ODV|1|qStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
165ODV|1|eStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
175ODV|1|kStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
185ODV|1|dStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
195ODV|1|cStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
205ODV|1|bStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
215ODV|1|iStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
225ODV|1|aStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
235ODV|1|rStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
245ODV|1|jStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
255ODV|1|pStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
265ODV|1|xStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
275ODV|1|nStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
285ODV|1|vStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
295ODV|1|mStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
308ACC|1|BCryoEM structure of sweet potato mild mottle virus VLPELECTRON MICROSCOPY2.95
316HXX|1|BhPotato virus YELECTRON MICROSCOPY3.45
326HXX|1|AgPotato virus YELECTRON MICROSCOPY3.45
336HXX|1|ApPotato virus YELECTRON MICROSCOPY3.45
346HXX|1|AzPotato virus YELECTRON MICROSCOPY3.45
356HXX|1|ArPotato virus YELECTRON MICROSCOPY3.45
366HXX|1|BiPotato virus YELECTRON MICROSCOPY3.45
376HXX|1|AdPotato virus YELECTRON MICROSCOPY3.45
386HXX|1|AqPotato virus YELECTRON MICROSCOPY3.45
396HXX|1|AvPotato virus YELECTRON MICROSCOPY3.45
406HXX|1|AnPotato virus YELECTRON MICROSCOPY3.45
416HXX|1|AxPotato virus YELECTRON MICROSCOPY3.45
426HXX|1|BaPotato virus YELECTRON MICROSCOPY3.45
436HXX|1|BgPotato virus YELECTRON MICROSCOPY3.45
446HXX|1|BdPotato virus YELECTRON MICROSCOPY3.45
456HXX|1|AePotato virus YELECTRON MICROSCOPY3.45
466HXX|1|AjPotato virus YELECTRON MICROSCOPY3.45
476HXX|1|AoPotato virus YELECTRON MICROSCOPY3.45
486HXX|1|AuPotato virus YELECTRON MICROSCOPY3.45
496HXX|1|BbPotato virus YELECTRON MICROSCOPY3.45
506HXX|1|AlPotato virus YELECTRON MICROSCOPY3.45
516HXX|1|AkPotato virus YELECTRON MICROSCOPY3.45
526HXX|1|AwPotato virus YELECTRON MICROSCOPY3.45
536HXX|1|BePotato virus YELECTRON MICROSCOPY3.45
546HXX|1|AaPotato virus YELECTRON MICROSCOPY3.45
556HXX|1|AcPotato virus YELECTRON MICROSCOPY3.45
566HXX|1|AyPotato virus YELECTRON MICROSCOPY3.45
576HXX|1|AtPotato virus YELECTRON MICROSCOPY3.45
586HXX|1|AbPotato virus YELECTRON MICROSCOPY3.45
596HXX|1|AfPotato virus YELECTRON MICROSCOPY3.45
606HXX|1|AsPotato virus YELECTRON MICROSCOPY3.45
616HXX|1|AhPotato virus YELECTRON MICROSCOPY3.45
626HXX|1|AmPotato virus YELECTRON MICROSCOPY3.45
636HXX|1|BcPotato virus YELECTRON MICROSCOPY3.45
646HXX|1|AiPotato virus YELECTRON MICROSCOPY3.45
656HXX|1|BfPotato virus YELECTRON MICROSCOPY3.45
668ACB|1|BCryoEM structure of sweet potato feathery mottle virus VLPELECTRON MICROSCOPY2.65
674J7M|1|BCrystal structure of mouse DXO in complex with substrate mimic RNA and calcium ionX-RAY DIFFRACTION1.75
684J7L|1|BCrystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ionsX-RAY DIFFRACTION1.85
697Z52|1|RHuman NEXT dimer - focused reconstruction of the single MTR4ELECTRON MICROSCOPY3.45
705FN1|1|BElectron cryo-microscopy of filamentous flexible virus PepMV (Pepino Mosaic Virus)ELECTRON MICROSCOPY3.95
715W0M|1|HStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-RAY DIFFRACTION2.34
725W0M|1|IStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-RAY DIFFRACTION2.34
735W0M|1|JStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-RAY DIFFRACTION2.34

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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