#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18P9A|1|AS (rep)5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0000180S yeast ribosome in complex with MethyllissoclimideX-ray diffraction2.91212024-11-27
28P9A|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0000180S yeast ribosome in complex with MethyllissoclimideX-ray diffraction2.91212024-11-27
35TBW|1|AS5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction31212017-07-26
45TBW|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction31212017-07-26
58PNN|1|AS5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0000180S yeast ribosome in complex with BromolissoclimideX-ray diffraction2.91212025-05-28
68P85|1|AS5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0000180S yeast ribosome in complex with FluorolissoclimideX-ray diffraction2.91212025-06-25
74V88|1|A35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction31212014-07-09
88P4V|1|AS5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0000180S yeast ribosome in complex with HaterumaimideQX-ray diffraction3.161212024-10-16
94V88|1|A75S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction31212014-07-09
108PNN|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0000180S yeast ribosome in complex with BromolissoclimideX-ray diffraction2.91212025-05-28
118P4V|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0000180S yeast ribosome in complex with HaterumaimideQX-ray diffraction3.161212024-10-16
128P85|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0000180S yeast ribosome in complex with FluorolissoclimideX-ray diffraction2.91212025-06-25
137OSA|1|AB5S ribosomal RNA5SSaccharomyces cerevisiaeEukaryaRF00001Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction31212021-12-08
145I4L|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.11212016-06-22
156HHQ|1|AS5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of compound C45 bound to the yeast 80S ribosomeX-ray diffraction3.11212019-02-20
165MEI|1|AS5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Agelastatin A bound to the 80S ribosomeX-ray diffraction3.51212017-06-28
175MEI|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Agelastatin A bound to the 80S ribosomeX-ray diffraction3.51212017-06-28
185OBM|1|75S ribosomal RNA5S Ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-ray diffraction3.41212017-12-13
196HHQ|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of compound C45 bound to the yeast 80S ribosomeX-ray diffraction3.11212019-02-20
205LYB|1|75S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.251212016-11-23
215ON6|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of haemanthamine bound to the 80S ribosomeX-ray diffraction3.11212018-02-28
225I4L|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.11212016-06-22
235ON6|1|AS5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of haemanthamine bound to the 80S ribosomeX-ray diffraction3.11212018-02-28
245LYB|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.251212016-11-23
255OBM|1|35S ribosomal RNA5S Ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-ray diffraction3.41212017-12-13
265NDW|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-ray diffraction3.71212017-12-13
277OSM|1|AB5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction31212021-12-08
285NDW|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-ray diffraction3.71212017-12-13
295NDV|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-ray diffraction3.31212017-12-13
305NDV|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-ray diffraction3.31212017-12-13
315FCJ|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.11212016-05-11
325FCJ|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.11212016-05-11
335NDG|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-ray diffraction3.71212017-12-13
345NDG|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-ray diffraction3.71212017-12-13
355TGM|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.51212017-01-18
365TGM|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.51212017-01-18
374V7R|1|B25S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome.X-ray diffraction41212014-07-09
384V7R|1|D25S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome.X-ray diffraction41212014-07-09
395DAT|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.151212016-08-31
405DGV|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.11212016-12-14
415DGF|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.31212016-12-14
425DAT|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.151212016-08-31
435DGE|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.451212017-01-25
445DGV|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.11212016-12-14
455TGA|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.31212016-11-23
465DC3|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.251212016-06-01
475DGE|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.451212017-01-25
485DC3|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.251212016-06-01
495FCI|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.41212016-05-11
505TGA|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.31212016-11-23
515DGF|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.31212016-12-14
525FCI|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.41212016-05-11
538CCS|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0000180S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complexElectron microscopy1.971212023-09-20
548CDR|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.041212023-09-20
558CEH|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.051212023-09-20
568P8N|1|LE5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Mouse RPL39 integrated into the yeast 60S ribosomal subunitElectron microscopy2.151212024-06-12
578PFR|1|LE5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Mouse RPL39L integrated into the yeast 60S ribosomal subunitElectron microscopy2.151212024-06-26
588EVT|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite mapElectron microscopy2.21212023-09-06
598T2Y|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PREElectron microscopy2.21212024-12-11
608P8U|1|LE5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 60S ribosomal subunitElectron microscopy2.231212024-06-12
618CGN|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Non-rotated 80S S. cerevisiae ribosome with ligandsElectron microscopy2.281212023-09-20
627UOO|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateElectron microscopy2.341212023-03-15
637V08|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainElectron microscopy2.361212023-03-15
648EVP|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IElectron microscopy2.381212023-09-06
657ZW0|1|LC5S ribosomal RNA5S ribosomal RNA (RDN5-1)Saccharomyces cerevisiae W303EukaryaRF00001FAP-80S Complex - Rotated stateElectron microscopy2.41212022-10-05
668AGX|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state with the RING domain of Ltn1 in the IN positionElectron microscopy2.41212023-03-08
678T2Z|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POSTElectron microscopy2.41212024-12-11
688BN3|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S, ES7s delta, eIF5A, Stm1 containingElectron microscopy2.41212024-01-10
698ZHC|1|LB5S ribosomal RNA5S rRNA (121-MER)Saccharomyces cerevisiae S288CEukaryaRF00001pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNVElectron microscopy2.31212025-05-21
707TOP|1|A5S5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20Electron microscopy2.41212022-05-25
717UQB|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4Electron microscopy2.431212023-03-15
727UQZ|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainElectron microscopy2.441212023-03-15
738EWC|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIElectron microscopy2.451212023-09-06
748T2X|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PREElectron microscopy2.461212024-12-11
758CIV|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.471212023-09-20
767ZUX|1|45S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Collided ribosome in a disome unit from S. cerevisiaeElectron microscopy2.51212023-02-22
778AAF|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state GElectron microscopy2.51212023-03-08
788EUB|1|A35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IElectron microscopy2.521212023-09-06
798CG8|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.571212023-09-20
806T4Q|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.Electron microscopy2.61212019-12-25
818AGT|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state FElectron microscopy2.61212023-03-08
828AGW|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state DElectron microscopy2.61212023-03-08
838AGZ|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state with the RING domain of Ltn1 in the OUT positionElectron microscopy2.61212023-03-08
848AGV|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state HElectron microscopy2.61212023-03-08
858EVS|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIElectron microscopy2.621212023-09-06
868HFR|1|2f5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiae S288CEukaryaRF00001NPC-trapped pre-60S particleElectron microscopy2.641212023-04-12
878P8M|1|LE5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 60S ribosomal subunit, RPL39 deletionElectron microscopy2.661212024-06-12
887MPJ|1|A35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Stm1 bound vacant 80S structure isolated from nop1-D243AElectron microscopy2.71212022-05-11
898AGU|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state EElectron microscopy2.71212023-03-08
908CF5|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.711212023-09-20
918EVQ|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure IElectron microscopy2.721212023-09-06
928CDL|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0000180S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complexElectron microscopy2.721212023-09-20
937TOO|1|A5S5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20Electron microscopy2.71212022-05-25
948ZHB|1|LB5S ribosomal RNA5S rRNA (121-MER)Saccharomyces cerevisiae S288CEukaryaRF0000180S ribosome with A/A P/E tRNA and mRNA of WNVElectron microscopy2.61212025-05-21
958ZGR|1|LB5S ribosomal RNA5S rRNA (121-MER)Saccharomyces cerevisiae S288CEukaryaRF0000180S ribosome with A/A tRNA and mRNA of WNVElectron microscopy2.71212025-05-21
968ZH3|1|LB5S ribosomal RNA5S rRNA (121-MER)Saccharomyces cerevisiae S288CEukaryaRF0000180S ribosome with A/P-P/E tRNA and mRNA of WNVElectron microscopy2.71212025-05-21
976TB3|1|BR5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexElectron microscopy2.81212020-04-22
986SNT|1|45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome stalled on SDD1 mRNA.Electron microscopy2.81212020-03-04
998T3A|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2Electron microscopy2.861212024-12-11
1008EWB|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIIElectron microscopy2.871212023-09-06
1018EVR|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIElectron microscopy2.871212023-09-06
1027AZY|1|F5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiae S288CEukaryaRF00001Context-specific inhibition of eukaryotic translation by macrolide antibioticsElectron microscopy2.8771212021-05-19
1038T30|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotatedElectron microscopy2.881212024-12-11
1044U4R|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.81212014-10-22
1058ZGY|1|LB5S ribosomal RNA5S rRNA (121-MER)Saccharomyces cerevisiae S288CEukaryaRF0000180S ribosome with P/E tRNA and mRNA of WNVElectron microscopy2.81212025-05-21
1064U3U|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.91212014-10-22
1076WOO|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPElectron microscopy2.91212020-09-23
1089F9S|1|M35S ribosomal RNASaccharomyces cerevisiae S288C 5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Yeast SDD1 Disome with Mbf1Electron microscopy2.91212024-12-04
1097UG6|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922Electron microscopy2.91212022-12-21
1109F9S|1|L35S ribosomal RNASaccharomyces cerevisiae S288C 5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Yeast SDD1 Disome with Mbf1Electron microscopy2.91212024-12-04
1118T3D|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIIElectron microscopy2.951212024-12-11
1124U4R|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.81212014-10-22
1134U3U|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.91212014-10-22
1148K82|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNAElectron microscopy31212024-07-10
1158T3E|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IVElectron microscopy3.041212024-12-11
1167N8B|1|A35S ribosomal RNA5SSaccharomyces cerevisiaeEukaryaRF00001Cycloheximide bound vacant 80S structure isolated from cbf5-D95AElectron microscopy3.051212022-05-11
1177MPI|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Stm1 bound vacant 80S structure isolated from cbf5-D95AElectron microscopy3.051212022-05-11
1184U4Q|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction31212014-10-22
1194U4Q|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction31212014-10-22
1208T3B|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IElectron microscopy3.081212024-12-11
1218T3F|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure VElectron microscopy3.091212024-12-11
1224U3M|1|75S ribosomal RNA5.8s rRNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction31212014-10-22
1234U52|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction31212014-10-22
1244U3M|1|35S ribosomal RNA5.8s rRNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction31212014-10-22
1258BIP|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complexElectron microscopy3.11212023-02-08
1266QIK|1|x5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.11212019-06-26
1277OHQ|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001Nog1-TAP associated immature ribosomal particle population C from S. cerevisiaeElectron microscopy3.11212021-11-03
1289F58|1|b5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Gcn2 dimer bound to the 60S ribosomal subunitElectron microscopy3.11212025-03-26
1298CKU|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarinElectron microscopy3.111212023-09-20
1304U4U|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction31212014-10-22
1317BT6|1|35S ribosomal RNARDN5-2 rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)Electron microscopy3.121212020-10-28
1326Q8Y|1|BR5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexElectron microscopy3.11212019-03-13
1338UTI|1|B5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Eukaryotic 80S ribosome with Reh1 and A/P site tRNAElectron microscopy3.131212024-11-06
1346YLG|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)Electron microscopy31172020-07-29
1354U6F|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.11212014-10-22
1365T62|1|B5S ribosomal RNA5S Ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexElectron microscopy3.11212017-02-08
1374U52|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction31212014-10-22
1384U4U|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction31212014-10-22
1396T7T|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of yeast 80S ribosome stalled on poly(A) tract.Electron microscopy3.11212019-12-25
1408K2D|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5AElectron microscopy3.21212024-07-10
1416XIR|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressElectron microscopy3.21212020-08-26
1426RZZ|1|x5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.21212019-06-26
1437ZS5|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNAElectron microscopy3.21212023-02-22
1448Z70|1|B5S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decodingElectron microscopy3.21212024-12-11
1456M62|1|35S ribosomal RNARDN5-2 rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.Electron microscopy3.21212020-08-26
1469OFV|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complexElectron microscopy3.161212025-06-11
1478UT0|1|B5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNAElectron microscopy3.221212024-11-06
1487BTB|1|35S ribosomal RNARDN5-2 rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)Electron microscopy3.221212020-10-28
1497RR5|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of ribosomal complex bound with Rbg1/Tma46Electron microscopy3.231212021-11-10
1506YLH|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Rix1-Rea1 pre-60S particle - full composite structureElectron microscopy3.11172020-07-29
1514U4N|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.11212014-10-22
1524U6F|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.11212014-10-22
1536TNU|1|BR5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.Electron microscopy3.11212020-04-22
1543JCT|1|35S ribosomal RNARDN5-2 rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-em structure of eukaryotic pre-60S ribosomal subunitsElectron microscopy3.081212016-06-01
1554U3N|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.21212014-10-22
1564U4Z|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.11212014-10-22
1574U4N|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.11212014-10-22
1586T7I|1|C45S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.Electron microscopy3.21212019-12-25
1597B7D|1|LB5S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsElectron microscopy3.31212021-03-10
1606RI5|1|x5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.31212019-06-26
1616S47|1|AB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1Electron microscopy3.281212019-07-24
1624U4Z|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.11212014-10-22
1634U55|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.21212014-10-22
1644U50|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.21212014-10-22
1655M1J|1|345S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Nonstop ribosomal complex bound with Dom34 and Hbs1Electron microscopy3.31212017-01-18
1664U3N|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.21212014-10-22
1674U50|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.21212014-10-22
1684U4Y|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.21212014-10-22
1694U4Y|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.21212014-10-22
1704U51|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.21212014-10-22
1716Z6K|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesElectron microscopy3.41212020-07-29
1726Z6J|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionElectron microscopy3.41212020-07-29
1736QT0|1|x5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.41212019-06-26
1747OH3|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001Nog1-TAP associated immature ribosomal particle population B from S. cerevisiaeElectron microscopy3.41212021-11-03
1758XU8|1|B5S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferationElectron microscopy3.41212024-12-11
1764U55|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.21212014-10-22
1775H4P|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1Electron microscopy3.071212017-01-25
1786SV4|1|YR5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.31212020-03-04
1796SV4|1|ZR5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.31212020-03-04
1804U53|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.31212014-10-22
1817ZPQ|1|45S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)Electron microscopy3.471212023-02-22
1825APO|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1Electron microscopy3.411212015-12-16
1836QTZ|1|x5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.51212019-06-26
1846R86|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Yeast Vms1-60S ribosomal subunit complex (post-state)Electron microscopy3.41212019-07-31
1856N8M|1|B5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunitElectron microscopy3.51212019-03-13
1864U51|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.21212014-10-22
1874U53|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.31212014-10-22
1886SV4|1|BR5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.31212020-03-04
1896N8O|1|B5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunitElectron microscopy3.51212019-03-13
1906N8J|1|25S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunitElectron microscopy3.51212019-03-13
1916R87|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)Electron microscopy3.41212019-06-26
1926HD7|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of the ribosome-NatA complexElectron microscopy3.41212018-12-19
1938Y0U|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001dormant ribosome with STM1Electron microscopy3.591212024-02-07
1945JUP|1|D5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)Electron microscopy3.51212016-10-05
1956N8K|1|25S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunitElectron microscopy3.61212019-03-13
1968Z71|1|B5S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decodingElectron microscopy3.61212024-12-11
1976N8L|1|25S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunitElectron microscopy3.61212019-03-13
1984U56|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.451212014-10-22
1996R84|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)Electron microscopy3.61212019-06-26
2008CMJ|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarinElectron microscopy3.791212023-09-20
2014U56|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.451212014-10-22
2028BQX|1|BR5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome in complex with Map1 (conformation 2)Electron microscopy3.81212023-03-22
2038BJQ|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complexElectron microscopy3.81212023-02-08
2046OIG|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Subunit joining exposes nascent pre-40S rRNA for processing and quality controlElectron microscopy3.81212020-09-30
2057Z34|1|25S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001Structure of pre-60S particle bound to DRG1(AFG2)Electron microscopy3.81212022-09-21
2068T3C|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIElectron microscopy3.861212024-12-11
2076N8N|1|B5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunitElectron microscopy3.81212019-03-13
2088BQD|1|BR5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome in complex with Map1 (conformation 1)Electron microscopy3.91212023-03-22
2096S05|1|x5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.91212019-06-26
2107NRC|1|LB5S ribosomal RNA5S rRNA (121-MER)Saccharomyces cerevisiae S288CEukaryaRF00001Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5AElectron microscopy3.91212021-05-05
2118YLR|1|B5S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocationElectron microscopy3.91212024-12-11
2128YLD|1|B5S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocationElectron microscopy3.91212024-12-11
2136GQB|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)Electron microscopy3.91212018-07-11
2145MC6|1|BR5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeElectron microscopy3.81212017-01-18
2156T83|1|Bb5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of yeast disome (di-ribosome) stalled on poly(A) tract.Electron microscopy41212019-12-25
2166T83|1|4b5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of yeast disome (di-ribosome) stalled on poly(A) tract.Electron microscopy41212019-12-25
2175JUT|1|D5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)Electron microscopy41212016-10-05
2186FT6|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactorsElectron microscopy3.91212018-03-28
2195JUO|1|D5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)Electron microscopy41212016-10-05
2205JUU|1|D5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)Electron microscopy41212016-10-05
2216GQV|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)Electron microscopy41212018-07-11
2225APN|1|75S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1Electron microscopy3.911212015-12-16
2234U4O|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.61212014-10-22
2244U4O|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.61212014-10-22
2255GAK|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AElectron microscopy3.881212016-02-24
2267OF1|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001Nog1-TAP associated immature ribosomal particle population A from S. cerevisiaeElectron microscopy3.1432021-11-03

Release history

Release3.3933.3943.3953.3963.3973.3983.399
Date2025-06-252025-07-022025-07-092025-07-162025-07-232025-07-302025-08-06

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17OF1|1|3Nog1-TAP associated immature ribosomal particle population A from S. cerevisiaeELECTRON MICROSCOPY3.143
27Z34|1|2Structure of pre-60S particle bound to DRG1(AFG2)ELECTRON MICROSCOPY3.8121
38ZGR|1|LB80S ribosome with A/A tRNA and mRNA of WNVELECTRON MICROSCOPY2.7121
48ZHC|1|LBpre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNVELECTRON MICROSCOPY2.3121
58ZHB|1|LB80S ribosome with A/A P/E tRNA and mRNA of WNVELECTRON MICROSCOPY2.6121
65JUO|1|DSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)ELECTRON MICROSCOPY4121
75JUT|1|DSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)ELECTRON MICROSCOPY4121
85JUU|1|DSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)ELECTRON MICROSCOPY4121
95JUP|1|DSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.5121
108T3C|1|A3Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIELECTRON MICROSCOPY3.86121
118T3E|1|A3Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IVELECTRON MICROSCOPY3.04121
128T3A|1|A3Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2ELECTRON MICROSCOPY2.86121
138T3D|1|A3Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIIELECTRON MICROSCOPY2.95121
148T3F|1|A3Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure VELECTRON MICROSCOPY3.09121
158T3B|1|A3Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IELECTRON MICROSCOPY3.08121
168CG8|1|BBTranslocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.57121
178CGN|1|BBNon-rotated 80S S. cerevisiae ribosome with ligandsELECTRON MICROSCOPY2.28121
188CDR|1|BBTranslocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.04121
198CIV|1|BBTranslocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.47121
208CEH|1|BBTranslocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.05121
218CCS|1|BB80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complexELECTRON MICROSCOPY1.97121
228CF5|1|BBTranslocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.71121
238CDL|1|BB80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complexELECTRON MICROSCOPY2.72121
248CKU|1|BBTranslocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarinELECTRON MICROSCOPY3.11121
258CMJ|1|BBTranslocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarinELECTRON MICROSCOPY3.79121
265M1J|1|34Nonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.3121
279F9S|1|M3Yeast SDD1 Disome with Mbf1ELECTRON MICROSCOPY2.9121
286XIR|1|3Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.2121
298XU8|1|BState 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferationELECTRON MICROSCOPY3.4121
308YLD|1|BState 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocationELECTRON MICROSCOPY3.9121
318YLR|1|BState 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocationELECTRON MICROSCOPY3.9121
327ZS5|1|3Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNAELECTRON MICROSCOPY3.2121
336HD7|1|3Cryo-EM structure of the ribosome-NatA complexELECTRON MICROSCOPY3.4121
345GAK|1|3Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AELECTRON MICROSCOPY3.88121
356R87|1|3Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)ELECTRON MICROSCOPY3.4121
366R84|1|3Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)ELECTRON MICROSCOPY3.6121
376R86|1|3Yeast Vms1-60S ribosomal subunit complex (post-state)ELECTRON MICROSCOPY3.4121
386SV4|1|YRThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.3121
396SV4|1|ZRThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.3121
406SV4|1|BRThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.3121
416T83|1|BbStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY4121
426T83|1|4bStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY4121
438UTI|1|BEukaryotic 80S ribosome with Reh1 and A/P site tRNAELECTRON MICROSCOPY3.13121
448UT0|1|BEukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNAELECTRON MICROSCOPY3.22121
455MC6|1|BRCryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeELECTRON MICROSCOPY3.8121
468T2Z|1|A3Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POSTELECTRON MICROSCOPY2.4121
478T2X|1|A3Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PREELECTRON MICROSCOPY2.46121
488T2Y|1|A3Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PREELECTRON MICROSCOPY2.2121
498T30|1|A3Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotatedELECTRON MICROSCOPY2.88121
505NDV|1|7Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.3121
515NDW|1|7Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.7121
525NDG|1|7Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.7121
535FCI|1|7Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.4121
545FCJ|1|7Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.1121
555TGA|1|7Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.3121
565I4L|1|7Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
575LYB|1|7Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.25121
584V88|1|A7The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION3121
594U3U|1|7Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.9121
604U4R|1|7Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.8121
614U3M|1|7Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
624U4Y|1|7Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
634U3N|1|7Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
644U4Z|1|7Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
654U55|1|7Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
664U4N|1|7Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
674U4Q|1|7Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
684U4U|1|7Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
694U53|1|7Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.3121
704U51|1|7Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
714U56|1|7Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.45121
724U50|1|7Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
734U52|1|7Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
744U6F|1|7Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
755DGV|1|7Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.1121
765DGF|1|7Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.3121
775DAT|1|7Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.15121
785DC3|1|7Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.25121
795DGE|1|7Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.45121
805TGM|1|7Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.5121
814U4O|1|7Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.6121
825MEI|1|ASCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.5121
835ON6|1|ASCrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.1121
845TBW|1|ASCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
856HHQ|1|ASCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
868P9A|1|AS80S yeast ribosome in complex with MethyllissoclimideX-RAY DIFFRACTION2.9121
878P85|1|AS80S yeast ribosome in complex with FluorolissoclimideX-RAY DIFFRACTION2.9121
888PNN|1|AS80S yeast ribosome in complex with BromolissoclimideX-RAY DIFFRACTION2.9121
898P4V|1|AS80S yeast ribosome in complex with HaterumaimideQX-RAY DIFFRACTION3.16121
907OSM|1|ABIntermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION3121
917OSA|1|ABPre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION3121
926QTZ|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.5121
936RI5|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.3121
948EWC|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIELECTRON MICROSCOPY2.45121
958EVT|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite mapELECTRON MICROSCOPY2.2121
968EVP|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IELECTRON MICROSCOPY2.38121
977MPI|1|A3Stm1 bound vacant 80S structure isolated from cbf5-D95AELECTRON MICROSCOPY3.05121
987MPJ|1|A3Stm1 bound vacant 80S structure isolated from nop1-D243AELECTRON MICROSCOPY2.7121
997N8B|1|A3Cycloheximide bound vacant 80S structure isolated from cbf5-D95AELECTRON MICROSCOPY3.05121
1008EWB|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIIELECTRON MICROSCOPY2.87121
1018EUB|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IELECTRON MICROSCOPY2.52121
1028EVS|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIELECTRON MICROSCOPY2.62121
1038EVQ|1|A3Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure IELECTRON MICROSCOPY2.72121
1048EVR|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIELECTRON MICROSCOPY2.87121
1058ZGY|1|LB80S ribosome with P/E tRNA and mRNA of WNVELECTRON MICROSCOPY2.8121
1068ZH3|1|LB80S ribosome with A/P-P/E tRNA and mRNA of WNVELECTRON MICROSCOPY2.7121
1077AZY|1|FContext-specific inhibition of eukaryotic translation by macrolide antibioticsELECTRON MICROSCOPY2.877121
1086Q8Y|1|BRCryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexELECTRON MICROSCOPY3.1121
1096WOO|1|7CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.9121
1105APO|1|7Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.41121
1115APN|1|7Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1ELECTRON MICROSCOPY3.91121
1128K2D|1|C4Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5AELECTRON MICROSCOPY3.2121
1136Z6K|1|C4Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesELECTRON MICROSCOPY3.4121
1146Z6J|1|C4Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionELECTRON MICROSCOPY3.4121
1156S47|1|ABSaccharomyces cerevisiae 80S ribosome bound with ABCF protein New1ELECTRON MICROSCOPY3.28121
1168Z70|1|BState 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decodingELECTRON MICROSCOPY3.2121
1178Z71|1|BState 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decodingELECTRON MICROSCOPY3.6121
1186T7I|1|C4Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.ELECTRON MICROSCOPY3.2121
1196T7T|1|C4Structure of yeast 80S ribosome stalled on poly(A) tract.ELECTRON MICROSCOPY3.1121
1206SNT|1|4Yeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.8121
1216T4Q|1|C4Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.6121
1226TB3|1|BRyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.8121
1238K82|1|C4Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNAELECTRON MICROSCOPY3121
1248BJQ|1|C4Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complexELECTRON MICROSCOPY3.8121
1258BIP|1|C4Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complexELECTRON MICROSCOPY3.1121
1267ZPQ|1|4Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)ELECTRON MICROSCOPY3.47121
1279F9S|1|L3Yeast SDD1 Disome with Mbf1ELECTRON MICROSCOPY2.9121
1288AGV|1|hYeast RQC complex in state HELECTRON MICROSCOPY2.6121
1298AGT|1|hYeast RQC complex in state FELECTRON MICROSCOPY2.6121
1308AAF|1|hYeast RQC complex in state GELECTRON MICROSCOPY2.5121
1318AGX|1|hYeast RQC complex in state with the RING domain of Ltn1 in the IN positionELECTRON MICROSCOPY2.4121
1328AGU|1|hYeast RQC complex in state EELECTRON MICROSCOPY2.7121
1338AGZ|1|hYeast RQC complex in state with the RING domain of Ltn1 in the OUT positionELECTRON MICROSCOPY2.6121
1348AGW|1|hYeast RQC complex in state DELECTRON MICROSCOPY2.6121
1359OFV|1|hConsensus reconstruction of the eukaryotic Ribosome-associated Quality Control complexELECTRON MICROSCOPY3.16121
1367ZW0|1|LCFAP-80S Complex - Rotated stateELECTRON MICROSCOPY2.4121
1378BN3|1|3Yeast 80S, ES7s delta, eIF5A, Stm1 containingELECTRON MICROSCOPY2.4121
1389F58|1|bGcn2 dimer bound to the 60S ribosomal subunitELECTRON MICROSCOPY3.1121
1395NDV|1|3Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.3121
1405TGM|1|3Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.5121
1415DGF|1|3Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.3121
1425DGE|1|3Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.45121
1435DC3|1|3Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.25121
1445NDW|1|3Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.7121
1455NDG|1|3Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.7121
1465FCI|1|3Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.4121
1474U56|1|3Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.45121
1488P9A|1|380S yeast ribosome in complex with MethyllissoclimideX-RAY DIFFRACTION2.9121
1498P85|1|380S yeast ribosome in complex with FluorolissoclimideX-RAY DIFFRACTION2.9121
1508PNN|1|380S yeast ribosome in complex with BromolissoclimideX-RAY DIFFRACTION2.9121
1518P4V|1|380S yeast ribosome in complex with HaterumaimideQX-RAY DIFFRACTION3.16121
1525DAT|1|3Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.15121
1535DGV|1|3Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.1121
1545LYB|1|3Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.25121
1555TGA|1|3Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.3121
1564U6F|1|3Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
1574U52|1|3Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
1585ON6|1|3Crystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.1121
1595TBW|1|3Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
1606HHQ|1|3Crystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
1614U4Q|1|3Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
1624U4U|1|3Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
1634U3M|1|3Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
1644U3U|1|3Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.9121
1654U4R|1|3Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.8121
1664V88|1|A3The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION3121
1674U3N|1|3Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
1684U4Z|1|3Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
1694U4N|1|3Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
1704U4Y|1|3Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
1714U51|1|3Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
1724U55|1|3Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
1734U50|1|3Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
1744U53|1|3Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.3121
1755I4L|1|3Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
1765FCJ|1|3Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.1121
1775MEI|1|3Crystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.5121
1784U4O|1|3Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.6121
1797ZUX|1|4Collided ribosome in a disome unit from S. cerevisiaeELECTRON MICROSCOPY2.5121
1807TOP|1|A5SYeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20ELECTRON MICROSCOPY2.4121
1817TOO|1|A5SYeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20ELECTRON MICROSCOPY2.7121
1828P8U|1|LEYeast 60S ribosomal subunitELECTRON MICROSCOPY2.23121
1838P8N|1|LEMouse RPL39 integrated into the yeast 60S ribosomal subunitELECTRON MICROSCOPY2.15121
1848PFR|1|LEMouse RPL39L integrated into the yeast 60S ribosomal subunitELECTRON MICROSCOPY2.15121
1858P8M|1|LEYeast 60S ribosomal subunit, RPL39 deletionELECTRON MICROSCOPY2.66121
1868Y0U|1|C4dormant ribosome with STM1ELECTRON MICROSCOPY3.59121
1877RR5|1|C4Structure of ribosomal complex bound with Rbg1/Tma46ELECTRON MICROSCOPY3.23121
1887NRC|1|LBStructure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5AELECTRON MICROSCOPY3.9121
1898BQX|1|BRYeast 80S ribosome in complex with Map1 (conformation 2)ELECTRON MICROSCOPY3.8121
1908BQD|1|BRYeast 80S ribosome in complex with Map1 (conformation 1)ELECTRON MICROSCOPY3.9121
1916TNU|1|BRYeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.1121
1927B7D|1|LBYeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsELECTRON MICROSCOPY3.3121
1935OBM|1|7Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.4121
1945OBM|1|3Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.4121
1956QT0|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.4121
1963JCT|1|3Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.08121
1976N8O|1|BCryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.5121
1986N8M|1|BCryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.5121
1996N8N|1|BCryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunitELECTRON MICROSCOPY3.8121
2006N8L|1|2Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.6121
2016N8K|1|2Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.6121
2025T62|1|BNmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexELECTRON MICROSCOPY3.1121
2036RZZ|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.2121
2046QIK|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.1121
2056S05|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.9121
2065H4P|1|3Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1ELECTRON MICROSCOPY3.07121
2076N8J|1|2Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunitELECTRON MICROSCOPY3.5121
2086GQV|1|3Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)ELECTRON MICROSCOPY4121
2096GQB|1|3Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)ELECTRON MICROSCOPY3.9121
2108HFR|1|2fNPC-trapped pre-60S particleELECTRON MICROSCOPY2.64121
2116OIG|1|7Subunit joining exposes nascent pre-40S rRNA for processing and quality controlELECTRON MICROSCOPY3.8121
2126FT6|1|3Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactorsELECTRON MICROSCOPY3.9121
2137UG6|1|3Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922ELECTRON MICROSCOPY2.9121
2147BTB|1|3Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)ELECTRON MICROSCOPY3.22121
2156YLG|1|3Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)ELECTRON MICROSCOPY3117
2166YLH|1|3Rix1-Rea1 pre-60S particle - full composite structureELECTRON MICROSCOPY3.1117
2177BT6|1|3Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)ELECTRON MICROSCOPY3.12121
2187UOO|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateELECTRON MICROSCOPY2.34121
2197UQZ|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainELECTRON MICROSCOPY2.44121
2207V08|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainELECTRON MICROSCOPY2.36121
2217UQB|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4ELECTRON MICROSCOPY2.43121
2227OH3|1|3Nog1-TAP associated immature ribosomal particle population B from S. cerevisiaeELECTRON MICROSCOPY3.4121
2237OHQ|1|3Nog1-TAP associated immature ribosomal particle population C from S. cerevisiaeELECTRON MICROSCOPY3.1121
2246M62|1|3Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.ELECTRON MICROSCOPY3.2121
2254V7R|1|B2Yeast 80S ribosome.X-RAY DIFFRACTION4121
2264V7R|1|D2Yeast 80S ribosome.X-RAY DIFFRACTION4121

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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