Equivalence class NR_4.0_19719.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9MDY|1|A (rep) | RNA strand with s(2)U:A pair sequence 2 | synthetic construct | 16mer self-complementary duplex RNA with s(2)U:A pair sequence 2 | X-ray diffraction | 1.36 | 16 | 2025-05-14 | |||
| 2 | 9MDW|1|A | 16mer RNA strand with all Watson-Crick base pairs | synthetic construct | 16mer self-complementary duplex RNA with all Watson-Crick base pairs | X-ray diffraction | 1.421 | 16 | 2025-05-14 | |||
| 3 | 3ND4|1|A | 5'-R(*AP*GP*AP*GP*AP*AP*GP*AP*UP*CP*UP*UP*CP*UP*CP*U)-3' | Watson-Crick 16-mer dsRNA | X-ray diffraction | 1.52 | 16 | 2011-09-21 | ||||
| 4 | 9MDX|1|A | RNA strand with s(2)U:A pair sequence 1 | synthetic construct | 16mer self-complementary duplex RNA with s(2)U:A pair sequence 1 | X-ray diffraction | 1.5 | 16 | 2025-05-14 | |||
| 5 | 9CSO|1|A | RNA strand with s(2)C:G pair sequence 1 | synthetic construct | 16mer self-complementary duplex RNA with s(2)C:G pair sequence 1 | X-ray diffraction | 1.4 | 16 | 2025-05-14 | |||
| 6 | 9CSP|1|A | RNA strand with s(2)C:G pair sequence 2 | synthetic construct | 16mer self-complementary duplex RNA with s(2)C:G pair sequence 2 | X-ray diffraction | 1.6 | 16 | 2025-05-14 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9CSP|1|A | 16mer self-complementary duplex RNA with s(2)C:G pair sequence 2 | X-RAY DIFFRACTION | 1.6 | 16 | |
| 2 | 3ND4|1|A | Watson-Crick 16-mer dsRNA | X-RAY DIFFRACTION | 1.52 | 16 | |
| 3 | 9MDY|1|A | 16mer self-complementary duplex RNA with s(2)U:A pair sequence 2 | X-RAY DIFFRACTION | 1.36 | 16 | |
| 4 | 9MDW|1|A | 16mer self-complementary duplex RNA with all Watson-Crick base pairs | X-RAY DIFFRACTION | 1.421 | 16 | |
| 5 | 9CSO|1|A | 16mer self-complementary duplex RNA with s(2)C:G pair sequence 1 | X-RAY DIFFRACTION | 1.4 | 16 | |
| 6 | 9MDX|1|A | 16mer self-complementary duplex RNA with s(2)U:A pair sequence 1 | X-RAY DIFFRACTION | 1.5 | 16 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: